TCONS_00063322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063322
Unique NameTCONS_00063322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063322 ID=TCONS_00063322|Name=TCONS_00063322|organism=Clytia hemisphaerica|type=transcript|length=304bp
TGTTCTGTAGTATTCACTGGCCAGAAGTTTACAAGCACTGGAATGACAAA
GTTGCAACGAATCGATTGGAAGCCGGAAACGGTATTGTTACAGATGATGA
AGCAGAAGACATCCAAAATGGAGGTTGCCATATCATacctaaagaaaatt
cattagTTCATAATGGTGATCTCATGTGGCGTTGGTCAATGTCGAACGCT
GAGGCATCGATCATTTCACATTTTTCAGAGCAACAAAAGTTGGCCTTTCT
TATGGTGAAAAGCTATTATTACAAATTCTTATCAAAAATTGGAGAAAATC
GTAA
Run BLAST on NCBI

protein sequence of TCONS_00063322-protein

>TCONS_00063322-protein ID=TCONS_00063322-protein|Name=TCONS_00063322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
FCSIHWPEVYKHWNDKVATNRLEAGNGIVTDDEAEDIQNGGCHIIPKENS
LVHNGDLMWRWSMSNAEASIISHFSEQQKLAFLMVKSYYYKFLSKIGENR
Run BLAST on NCBI

transcript from alignment at scaffold_385:64680..64983

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063322 ID=TCONS_00063322|Name=TCONS_00063322|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_385:64680..64983 (Clytia hemisphaerica)
TTACGATTTTCTCCAATTTTTGATAAGAATTTGTAATAATAGCTTTTCAC
CATAAGAAAGGCCAACTTTTGTTGCTCTGAAAAATGTGAAATGATCGATG
CCTCAGCGTTCGACATTGACCAACGCCACATGAGATCACCATTATGAAct
aatgaattttctttaggtATGATATGGCAACCTCCATTTTGGATGTCTTC
TGCTTCATCATCTGTAACAATACCGTTTCCGGCTTCCAATCGATTCGTTG
CAACTTTGTCATTCCAGTGCTTGTAAACTTCTGGCCAGTGAATACTACAG
AACA

Coding sequence (CDS) from alignment at scaffold_385:64680..64983

>TCONS_00063322 ID=TCONS_00063322|Name=TCONS_00063322|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_385:64680..64983 (Clytia hemisphaerica)
ACGATTTTCTCCAATTTTTGATAAGAATTTGTAATAATAGCTTTTCACCA
TAAGAAAGGCCAACTTTTGTTGCTCTGAAAAATGTGAAATGATCGATGCC
TCAGCGTTCGACATTGACCAACGCCACATGAGATCACCATTATGAActaa
tgaattttctttaggtATGATATGGCAACCTCCATTTTGGATGTCTTCTG
CTTCATCATCTGTAACAATACCGTTTCCGGCTTCCAATCGATTCGTTGCA
ACTTTGTCATTCCAGTGCTTGTAAACTTCTGGCCAGTGAATACTACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039672XLOC_039672Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063322-proteinTCONS_00063322-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063322-exon-scaffold_385-1491911889:64680..64983TCONS_00063322-exon-scaffold_385-1491911889:64680..64983Clytia hemisphaericaexon
TCONS_00063322-exon-scaffold_385-1510915933:64680..64983TCONS_00063322-exon-scaffold_385-1510915933:64680..64983Clytia hemisphaericaexon
TCONS_00063322-exon-scaffold_385-1575043694:64680..64983TCONS_00063322-exon-scaffold_385-1575043694:64680..64983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:64680..64983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.795014	0	2.4405	0.314549	0.287585	4.06645	0	6.79013	0	2.46208	6.18727	2.79213	13.8645	12.9577	1.4303	3.92922	9.14097	5.14879	0.710868	0.36704	1.74718	2.25984	7.07358	12.8877	0	3.81824	0	0.832739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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