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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063319 ID=TCONS_00063319|Name=TCONS_00063319|organism=Clytia hemisphaerica|type=transcript|length=1828bp
ATCATTCTTTAATCAGTTTTTTCTAATCTGGTAATAGTTTTGTTTCTATA
AGGACACGTTCCTTTCTTTTAttggaaataaaatgaaaaaaatattttca
gtctTTCATCTTTTACTAATATTCACTGAATATTTACTTTATGTCTTTAT
TGTattaaaaatccttttttccGTTTTAAGGTAAAGTGACGAGAACAATA
CTGCACTTCTGCGACGTATTATGGCGCGAAGTTTTCTTACAAAAGAAATA
GTTTACTTCCGTGTGGCGATTCCCCGGATTAAAGACTATTTTTTAGAGAG
gtgaaatgtaaacaaacacgTTTTCAAGATGGCGCGATAAAAAGTTAGAA
TTTTGTACACAGGAAAAATCTTTCGAAGAAGATGTATCGGACATTGAATA
AGATATCAAGCAAATCTTCGTATCTTTATTTAATAACGATTGCAATACTT
AGCATATGGTTAATTTCATGCAAATTCACAATATACAAACTGAATCAGCA
ATCTGGAAATGTTCTTAGTGTAAAACGAAGAGGAACATCACAATTTATCA
AGGCTGGTAATAAGATAAACTGTTACATGTTCATATTGATTATGAGTTCC
CCAAAAGGGGCTTTAAGGAGAACATCAATGAGAGAAACTTGGATAAAAAC
TAACGACGTAAATAAACTGAAAATAGAAAGAAGATTCATAATTGGCACCA
AAGGGCTGACACCCAATATTCTTAAAGAACTGTCAAGTGAGCAAGCCAAA
CACTCAGACTTGCTTTTATTGGATGATTTTGCAGACTCGTATTCGAAATT
GACAGAAAAACTTTTGAGAACAATTTTATGGATTGAGAATAATGTTGATG
CTAAATTTGTCATGAAAGTTGATGATGATTCATTTGTACGCCTTGATAAA
CTTATTCCTTCTTTGTCTGCAAAAGAACACATTGGGAGGATTTATTGGGG
ATTTTTCAAAGGAAATGCAAGAATTAAAAGAGCTGGTGCTTGGAAAGAAA
CAAAGTGGTTTTTATCTGATCATTATCTTCCTTATGCAGTTGGTGGTGGA
TATGTTATTACCTTTGATCTTGTCACATTCATATCAAGCAATGCAAACTA
TTTGTCATTGTACAACAGTGAAGATGTTTCAATGGGTGTATGGCTTGCAT
CCATCAAACTGAACCGTTTCCACGATGTGCGTTTTGATACCTGGTACAAA
AGTATGGGATGTAGTAACCTTCATATAGTATCACATAAACAGCAACCTGA
AGATATGTATGCTAAACATAACCAATTGACTAATAATGGAAAATTGTGTA
AAGTTGAAAAAGAACTAATGCTAACTTGGGACTACAACTGGAATGAATTT
CCATCTAACTGTTGTAGTAAACGTGTTAAGATATCatcaattaaaacatt
tttgtgattttattgCACACAACTTGGGCATATATTTTCAaggtgaaaaa
ctttcaattttagtGTAGCAATTATTTTTATgtcaaaaaaagctaaaaat
gaaTATACATTACACAACAAGCCAGTNAGTagcaattatttttataggaa
GAATTAGAAcgatttattttgaagaaaaagttaTTCACCCCTAAATGTGG
TTTCATTAATCATAACAAAAACAAGTTTTAAATTAAGAAACGTGTAGTGT
AAATGTATATTCATGTATGAAATGTATACCATGTACTTGAAAGAGTGAAA
TAAAGGAAAATCGAGGTgtcaaaaaaagctaaaaatgaaTATACATTACA
CAACAAACCAGTTTATTTTCTATCGAACTCTCTGTTACGGGTATCTTAAC
CTTTGGTTATTTGTAAAATATagtaatg Run BLAST on NCBI transcript from alignment at scaffold_385:587179..590245- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063319 ID=TCONS_00063319|Name=TCONS_00063319|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at scaffold_385:587179..590245- (Clytia hemisphaerica)
ATCATTCTTTAATCAGTTTTTTCTAATCTGGTAATAGTTTTGTTTCTATA
AGGACACGTTCCTTTCTTTTATTGGAAATAAAATGAAAAAAATATTTTCA
GTCTTTCATCTTTTACTAATATTCACTGAATATTTACTTTATGTCTTTAT
TGTATTAAAAATCCTTTTTTCCGTTTTAAGGTAAAGTGACGAGAACAATA
CTGCACTTCTGCGACGTATTATGGCGCGAAGTTTTCTTACAAAAGAAATA
GTTTACTTCCGTGTGGCGATTCCCCGGATTAAAGACTATTTTTTAGAGAG
GTGAAATGTAAACAAACACGTTTTCAAGATGGCGCGATAAAAAGTTAGAA
TTTTGTACACAGGAAAAATCTTTCGAAGAAGATGTATCGGACATTGAATA
AGATATCAAGCAAATCTTCGTATCTTTATTTAATAACGATTGCAATACTT
AGCATATGGTTAATTTCATGCAAATTCACAATATACAAACTGAATCAGCA
ATCTGGAAATGTTCTTAGTGTAAAACGAAGAGGAACATCACAATTTATCA
AGGCTGGTAATAAGATAAACTGTTACATGTTCATATTGATTATGAGTTCC
CCAAAAGGGGCTTTAAGGAGAACATCAATGAGAGAAACTTGGATAAAAAC
TAACGACGTAAATAAACTGAAAATAGAAAGAAGATTCATAATTGGCACCA
AAGGGCTGACACCCAATATTCTTAAAGAACTGTCAAGTGAGCAAGCCAAA
CACTCAGACTTGCTTTTATTGGATGATTTTGCAGACTCGTATTCGAAATT
GACAGAAAAACTTTTGAGAACAATTTTATGGATTGAGAATAATGTTGATG
CTAAATTTGTCATGAAAGTTGATGATGATTCATTTGTACGCCTTGATAAA
CTTATTCCTTCTTTGTCTGCAAAAGAACACATTGGGAGGATTTATTGGGG
ATTTTTCAAAGGAAATGCAAGAATTAAAAGAGCTGGTGCTTGGAAAGAAA
CAAAGTGGTTTTTATCTGATCATTATCTTCCTTATGCAGTTGGTGGTGGA
TATGTTATTACCTTTGATCTTGTCACATTCATATCAAGCAATGCAAACTA
TTTGTCATTGTACAACAGTGAAGATGTTTCAATGGGTAAATTGTCTTCTT
TTATTTAAGTAGGGAAAGCAGTAATTTTTNAACACATTGGGAGGATTTAT
TGGGGATTTTTCAAAGGAAATGCAAGAATTAAAAGAGCTGGTGCTTGGAA
AGAAACAAAGTGGTTTTTATCTGATCATTATCTTCCTTATGCAGTTGGTG
GTGGATATGTTATTAGCTTTGATCTTGTCACATTCATATCAAGCAATGCA
AACTATTTGTCATTGTACAACAGTGAAGATGTTTCAATGGGTAAATTGTC
TTCTTTTATTTAAGTAGGGGAAGCAGTAATTTTTCGCTTACAATATGGCC
TACCTTAAGGCGAGAAATTTCCGCGGGTACAAATTTTCGCGAATTTTAGT
CGATTTCGCAAAATTAAATACCCACGAAATAAATGTATCTAGGAGTCGCA
TTCGCGAAAATTTATACCTGCGAAAGTAGATTAAAATTGAAAGTAAGGGG
ATTTTATAGACCAAGCCACTAACAAGAACAAAAAAAGGTTAATTTTTTCC
GATTCACGAAAATAGATACCCGCAAAATTTTATGTTTGCATCCATTCGCG
AAAATAAATCTCCGCGAAAATTTCTCGCCTTAAGGTATTTTGCCCTCAAA
TTTGGAGGTATTTTTTTCATTTTGAGAATGCCTTATAAAAAAAATAAGTA
TTTTTGATTTTCGGTCTATTTTGAAAATTTTTAGCGTGTATTTAATTTTG
CAATTTTGTATTTTTGAAAAGTTTAAACAGTATTAAATTGCGCGAAATTA
AGTACCTGCAAAATTTTGTAACCAACAAAATTTAATACCAATAAGGTATT
CATGTTTCATGGAATTTAATTTTGCAATTTGTCAAAAAACAGAAATTAAA
TTCAGCGACAATTTATTCCTGTGAAAATTTGTTCCCTCAAGTTATTTTGA
GAAATTTAATGTTTACACTTATTTTTGTGGTAGACCTAAAACTGATGAAA
TTACCTTCTGGGAACTAATTTTCCCAAGAACTAATTTTTGCAAAAACTTA
TTTTTGATTTAAAAAATATTAAATTACAATGTATTTTTTTGTTAAAAATC
TGGTTCTGCAAATCTCCCAAGATCTGCCAAGATAGCAATTTCTCCCCATT
TTGCAAGATTGATTTTTGCGAAAATAGTAAAAAATGATTGAAACTGCAAA
ATCAAATCGAGTGAATTAGTATGATTAAAGATTAGTAGATGTTTAGCTTG
AATTAATCTGTTTATTATTTATAGGTGTATGGCTTGCATCCATCAAACTG
AACCGTTTCCACGATGTGCGTTTTGATACCTGGTACAAAAGTATGGGATG
TAGTAACCTTCATATAGTATCACATAAACAGCAACCTGAAGATATGTATG
CTAAACATAACCAATTGACTAATAATGGAAAATTGTGTAAAGTTGAAAAA
GAACTAATGCTAACTTGGGACTACAACTGGAATGAATTTCCATCTAACTG
TTGTAGTAAACGTGTTAAGATATCATCAATTAAAACATTTTTGTGATTTT
ATTGCACACAACTTGGGCATATATTTTCAAGGTGAAAAACTTTCAATTTT
AGTGTAGCAATTATTTTTATGTCAAAAAAAGCTAAAAATGAATATACATT
ACACAACAAGCCAGTNAGTAGCAATTATTTTTATAGGAAGAATTAGAACG
ATTTATTTTGAAGAAAAAGTTATTCACCCCTAAATGTGGTTTCATTAATC
ATAACAAAAACAAGTTTTAAATTAAGAAACGTGTAGTGTAAATGTATATT
CATGTATGAAATGTATACCATGTACTTGAAAGAGTGAAATAAAGGAAAAT
CGAGGTGTCAAAAAAAGCTAAAAATGAATATACATTACACAACAAACCAG
TTTATTTTCTATCGAACTCTCTGTTACGGGTATCTTAACCTTTGGTTATT
TGTAAAATATAGTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063319-exon-scaffold_385-1575043694:589111..590245 | TCONS_00063319-exon-scaffold_385-1575043694:589111..590245 | Clytia hemisphaerica | exon |
| TCONS_00063319-exon-scaffold_385-1575043694:587179..587871 | TCONS_00063319-exon-scaffold_385-1575043694:587179..587871 | Clytia hemisphaerica | exon |
| TCONS_00063319-exon-scaffold_385-1510915933:589111..590245 | TCONS_00063319-exon-scaffold_385-1510915933:589111..590245 | Clytia hemisphaerica | exon |
| TCONS_00063319-exon-scaffold_385-1510915933:587179..587871 | TCONS_00063319-exon-scaffold_385-1510915933:587179..587871 | Clytia hemisphaerica | exon |
| TCONS_00063319-exon-scaffold_385-1491911889:589111..590245 | TCONS_00063319-exon-scaffold_385-1491911889:589111..590245 | Clytia hemisphaerica | exon |
| TCONS_00063319-exon-scaffold_385-1491911889:587179..587871 | TCONS_00063319-exon-scaffold_385-1491911889:587179..587871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:587179..590245 - |
Blast
BLAST of TCONS_00063319 vs. Swiss-Prot (Human)
Match: B3GT6 (Beta-1,3-galactosyltransferase 6 OS=Homo sapiens GN=B3GALT6 PE=1 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 2.400e-72 Identity = 124/265 (46.79%), Postives = 170/265 (64.15%), Query Frame = 1
Query: 595 SSPKGALRRTSMRETWIKTNDVNKLKIERRFIIGTKGLTPNILKELSSEQAKHSXXXXXXXFADSYSKLTEKLLRTILWIENNVDAKFVMKVDDDSFVRLDKLIPSLSAKEHIGR--IYWGFFKGNARIKRAGAWKETKWFLSDHYLPYAVGGGYVITFDLVTFIXXXXXXXXXXXXEDVSMGVWLASIKLNRFHDVRFDTWYKSMGCSNLHIVSHKQQPEDMYAKHNQLTNNGKLCKVEKELMLTWDYNWNEFPSNCCSKRVKI 1383
S+P+ A RR+ +R TW+ + RF +GT GL + L EQA+H DLLLL D+Y LT K+L + W++ +V +FV+K DDDSF RLD L+ L A+E R +YWGFF G R+K G W+E W L D+YLPYA+GGGYV++ DLV ++ + +YL ++SEDVS+G WLA + + R HD RFDT Y+S GCSN ++V+HKQ EDM KH L G+LCK E +L L++ Y+W+ PS CC +R I
Sbjct: 65 SAPRAAERRSVIRSTWLARRGAPG-DVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLTAKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVKPGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYDWSAPPSQCCQRREGI 328
The following BLAST results are available for this feature:
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