TCONS_00063311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063311
Unique NameTCONS_00063311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063311 ID=TCONS_00063311|Name=TCONS_00063311|organism=Clytia hemisphaerica|type=transcript|length=203bp
gaagatcgtgcaCTTCTTTGTGCCCATATTTTCAAGCAACTTTCAAGAAG
CAGTGTGAATACACCCAtgatttataatttgaaaagagCTTTTTTGACAT
TAAATATTTTCTCTGAAGAATTTAAAACGAAGGCAGTCAACCGTCATGAG
ATACCGGCAACGCCAATTTCTGATACAgctcattcgcgaaattgaATCCA
CTT
Run BLAST on NCBI

transcript from alignment at scaffold_385:490542..492550-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063311 ID=TCONS_00063311|Name=TCONS_00063311|organism=Clytia hemisphaerica|type=transcript|length=2009bp|location=Sequence derived from alignment at scaffold_385:490542..492550- (Clytia hemisphaerica)
GAAGATCGTGCACTTCTTTGTGCCCATATTTTCAAGCAACTTTCAAGAAG
CAGTGTGAATACACCCATGATTTATAATTTGAAAAGAGCTTTTTTGACAT
TAAATATTTTCTCTGAAGAATTTAAAACGAAGGCAGTCAACCGTCATGAG
ATACCGGCAACGCCAATTTCTGATACAGTAAGAGCCAATCATTACTCATG
ATTGTACAGGGTGTCCCTAATTAAAGTATCGAGTCGAAACACAATTATGA
GTAGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCCCT
CTTTTTTCTTTGACATTACGATTAATTTATACGTTGTAACCACAGATCTC
TAAAGCCCGAAGGGCTAGATTTGCGGCTTTTATCGAAAAGTGAAGCCTAA
GTTTGGAAGGATTTCCTACCAAAGTCACGTGACTAAAATATGCAATTTCA
CCGGTTTGAGAGATGTGAAATAGCGTTTGCNNNNNNNNNNNNNNNNNTAA
AACAATTAAAATGCTAGATCCTATCCATCGGTACGAAATTTAAAAAGTCA
AATTTTTGCTTCACTTTTTTTTGCTGGAGAAAGCTTAAAGTTGCCTATTT
AGCCCTTCGGGCTTTACAGATATCTGTGGTTGTAACTACCTTTTGTAATA
AGCCTGTGTGATGGAGAACGTTCTTATATTTTAGCGATAACACACACAAA
CTTTTCTACTAAATCGCATGTTCAAACTCGATACTTTAATTAGGGACACC
CTGTATAATAATTTTAATTTTTTGTCCTTTTGATTTTCACTTAATGAATT
TGTCTCCATGATAGCTACATGCTTCAATTTTCAATGTTCTTGTCTTCAAT
ATCCAGTGGGAGTCAGTCTTTCTGTTCGTCTACAAACCCCTGTCTCACAG
TCCCGGTGAAACTTTTTCCCAGAAGGGGATAAAAATTTCTACGATTGAAA
TCTCAATGGGGAAAATAACTCTGTATATCTATCTTTTCCAAAAAGTATTA
TGAAAGCACATCCTGGAGCATCGAGCTTAAAGCCCGAAGAGCTAGGACAG
AATCTCTAACCTTTCACAGTAAAATCTATCGCTAGATTTCAAAAAAATGC
AGTCCTCAAAAACAAAGAAACCGCTGGATACAATCCGTCGTCATGATTGT
GGCGCGTTCTAGACGTGTTCTGGATGAGAAATAAGTGGCATCATTTTTTC
TTGCCAAAAAAAAGGTTAGAGATTCTTCTCTAGCCCTTCGGACTTTAAAC
TCAATGGATGTAACTAACACCCGTTTGATCTTTAACAAACACCACCCTTG
AAGTAATTTAGAGTCTGCAGGTTCTGTTGTTCAAGTTGAGAGTTGTTGTC
AAGTTGACAACATTTAATTACAAAAATACAAGAAAAGGAATTTTTTGCCA
TATTCTCATATCCATATCAAAACATTGCTCATGGATTAATTTTACATTAA
ATTTCTTGTTTGTGTAGAGCGAAACTTTTTTGAGATTAAATGTTTTTATT
GTCAAGTCTTAATAAAATGCGGAAAAAAACAGACAGGCTAAAGCTTTTAT
AATGCTTTGTAGTAAGCTAAGTGATATAGCTATGCCATATTTTCAATTCT
AAACCTGNGCACACAGGCTAAAGTTTTTACAATGCTTTGTAGTAAGCTAA
GTGATATAGCTATGCCATATTTTCAAATCTAAACCTGATTCCATTGAAGC
AGTTTTGATATTTTCTTTGAAGAGCAGAAGTTGTTTTTGTCATTTTTTTG
ATTTTAGCCCTTTTAGATATTTTTGGCATTATTTTCACGGGCCGAGGGTT
TAAGATACTCAGTATTCTATTTTAAAGTCTGCATATACTTTAATCGGATT
AACTTTTGCGAGATTAAATTTCGCGTGAGATTGCTGACGACTAGCGAAAT
TTTTGAAATCGTATTTTTGGTGGAGGAACCAGTCAAAATTCTCCTTTGGT
GGCAAAAAATTGCTATTTTCACCAGGCTTTTAGGCTCATTCGCGAAATTG
AATCCACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039666XLOC_039666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063311-exon-scaffold_385-1575043694:492374..492550TCONS_00063311-exon-scaffold_385-1575043694:492374..492550Clytia hemisphaericaexon
TCONS_00063311-exon-scaffold_385-1575043694:490542..490567TCONS_00063311-exon-scaffold_385-1575043694:490542..490567Clytia hemisphaericaexon
TCONS_00063311-exon-scaffold_385-1510915933:492374..492550TCONS_00063311-exon-scaffold_385-1510915933:492374..492550Clytia hemisphaericaexon
TCONS_00063311-exon-scaffold_385-1510915933:490542..490567TCONS_00063311-exon-scaffold_385-1510915933:490542..490567Clytia hemisphaericaexon
TCONS_00063311-exon-scaffold_385-1491911889:492374..492550TCONS_00063311-exon-scaffold_385-1491911889:492374..492550Clytia hemisphaericaexon
TCONS_00063311-exon-scaffold_385-1491911889:490542..490567TCONS_00063311-exon-scaffold_385-1491911889:490542..490567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:490542..492550 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.6663	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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