TCONS_00063288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063288
Unique NameTCONS_00063288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063288 ID=TCONS_00063288|Name=TCONS_00063288|organism=Clytia hemisphaerica|type=transcript|length=413bp
NTTTGTCCTTGCTTCAATTAAGATCAGGGTTACAAAAATCGAAGTTTCTT
TGTCGTTCtctcttttccttttttcaggacAACCGATGGTAACTGGACGC
AGCTGACAGAAAACAACGTGACGATCATAGAACAGATAACGCCAAAAAAG
CATCCAAGCTACCACAAGTTACCCACATTCAAAATGGACGAGGCTAAAGA
GATGAAAGCTTTTTGCAACTATCAATTGACCGATTTTAACAATTACTGTT
GATGACGTGGAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAAATC
ATGTAGTATTTCAGTCAGTTACATTAAAATTAAAGTGAAAGATACAAATA
CAGAATACAACAGAAATTCATAATATTAATTGAATTGACCTGGAACTAAA
ATGAGCAGCTACT
Run BLAST on NCBI

transcript from alignment at scaffold_385:402107..402711-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063288 ID=TCONS_00063288|Name=TCONS_00063288|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at scaffold_385:402107..402711- (Clytia hemisphaerica)
NTTTGTCCTTGCTTCAATTAAGATCAGGGTTACAAAAATCGAAGTTTCTT
TGTCGTTCTCTCTTTTCCTTTTTTCAGGACAACCGATGGTAACTGGACGC
AGCTGACAGAAAACAACGTGACGATCATAGAACAGATAACGCCAAAAAAG
CATCCAAGCTACCACAAGTTACCCACATTCAAAGCAGGTAAAAACTACTT
TTGCCATGCACTTTCGAATCTTTGGTGTATTTTTATCTGATTAATTTTAG
TTTGTTTGATAGAATTCTTGCTTATATCTATCGTATTAGCTTTAGTGGCT
CTCGTTTCTACTCATAGGTTAATCCAGGTCCCAAAACAAGTAAATTTTAA
TATGCTCATTTTGATTGTTTTTCAGATGGACGAGGCTAAAGAGATGAAAG
CTTTTTGCAACTATCAATTGACCGATTTTAACAATTACTGTTGATGACGT
GGAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAAATCATGTAGTA
TTTCAGTCAGTTACATTAAAATTAAAGTGAAAGATACAAATACAGAATAC
AACAGAAATTCATAATATTAATTGAATTGACCTGGAACTAAAATGAGCAG
CTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039661XLOC_039661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063288-exon-scaffold_385-1575043694:402529..402711TCONS_00063288-exon-scaffold_385-1575043694:402529..402711Clytia hemisphaericaexon
TCONS_00063288-exon-scaffold_385-1575043694:402107..402336TCONS_00063288-exon-scaffold_385-1575043694:402107..402336Clytia hemisphaericaexon
TCONS_00063288-exon-scaffold_385-1510915933:402529..402711TCONS_00063288-exon-scaffold_385-1510915933:402529..402711Clytia hemisphaericaexon
TCONS_00063288-exon-scaffold_385-1510915933:402107..402336TCONS_00063288-exon-scaffold_385-1510915933:402107..402336Clytia hemisphaericaexon
TCONS_00063288-exon-scaffold_385-1491911889:402529..402711TCONS_00063288-exon-scaffold_385-1491911889:402529..402711Clytia hemisphaericaexon
TCONS_00063288-exon-scaffold_385-1491911889:402107..402336TCONS_00063288-exon-scaffold_385-1491911889:402107..402336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:402107..402711 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264554	0	0	0.263756	1.22074	0.554766	3.50296	4.81865	8.0299	6.8679	12.6206	8.75476	5.535	8.20516	8.56021	6.99947	9.8585	10.0051	4.79208	4.12845	14.23	0	7.99021	7.69414	6.2032	9.09997	6.05781	6.55999	6.77314	5.44906
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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