TCONS_00063287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063287
Unique NameTCONS_00063287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063287 ID=TCONS_00063287|Name=TCONS_00063287|organism=Clytia hemisphaerica|type=transcript|length=416bp
TTTGTCCTTGCTTCAATTAAGATCAGGGTTACAAAAATCGAAGTTTCTTT
GTCGTTCtctcttttccttttttcaggacAACCGATGGTAACTGGACGCA
GCTGACAGAAAACAACGTGACGATCATAGAACAGATAACGCCAAAAAAGC
ATCCAAGCTACCACAAGTTACCCACATTCAAAGCAGATGGACGAGGCTAA
AGAGATGAAAGCTTTTTGCAACTATCAATTGACCGATTTTAACAATTACT
GTTGATGACGTGGAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAA
ATCATGTAGTATTTCAGTCAGTTACATTAAAATTAAAGTGAAAGATACAA
ATACAGAATACAACAGAAATTCATAATATTAATTGAATTGACCTGGAACT
AAAATGAGCAGCTACT
Run BLAST on NCBI

transcript from alignment at scaffold_385:402107..402710-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063287 ID=TCONS_00063287|Name=TCONS_00063287|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at scaffold_385:402107..402710- (Clytia hemisphaerica)
TTTGTCCTTGCTTCAATTAAGATCAGGGTTACAAAAATCGAAGTTTCTTT
GTCGTTCTCTCTTTTCCTTTTTTCAGGACAACCGATGGTAACTGGACGCA
GCTGACAGAAAACAACGTGACGATCATAGAACAGATAACGCCAAAAAAGC
ATCCAAGCTACCACAAGTTACCCACATTCAAAGCAGGTAAAAACTACTTT
TGCCATGCACTTTCGAATCTTTGGTGTATTTTTATCTGATTAATTTTAGT
TTGTTTGATAGAATTCTTGCTTATATCTATCGTATTAGCTTTAGTGGCTC
TCGTTTCTACTCATAGGTTAATCCAGGTCCCAAAACAAGTAAATTTTAAT
ATGCTCATTTTGATTGTTTTTCAGATGGACGAGGCTAAAGAGATGAAAGC
TTTTTGCAACTATCAATTGACCGATTTTAACAATTACTGTTGATGACGTG
GAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAAATCATGTAGTAT
TTCAGTCAGTTACATTAAAATTAAAGTGAAAGATACAAATACAGAATACA
ACAGAAATTCATAATATTAATTGAATTGACCTGGAACTAAAATGAGCAGC
TACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039661XLOC_039661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063287-exon-scaffold_385-1575043694:402525..402710TCONS_00063287-exon-scaffold_385-1575043694:402525..402710Clytia hemisphaericaexon
TCONS_00063287-exon-scaffold_385-1575043694:402107..402336TCONS_00063287-exon-scaffold_385-1575043694:402107..402336Clytia hemisphaericaexon
TCONS_00063287-exon-scaffold_385-1510915933:402525..402710TCONS_00063287-exon-scaffold_385-1510915933:402525..402710Clytia hemisphaericaexon
TCONS_00063287-exon-scaffold_385-1510915933:402107..402336TCONS_00063287-exon-scaffold_385-1510915933:402107..402336Clytia hemisphaericaexon
TCONS_00063287-exon-scaffold_385-1491911889:402525..402710TCONS_00063287-exon-scaffold_385-1491911889:402525..402710Clytia hemisphaericaexon
TCONS_00063287-exon-scaffold_385-1491911889:402107..402336TCONS_00063287-exon-scaffold_385-1491911889:402107..402336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:402107..402710 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	3.37039e-09	3.05316e-08	4.85002e-09	1.07479e-07	1.6793e-08	8.58577	3.01463	9.75818	16.0037	6.7929	5.85702	3.10349	3.50981	6.4535	10.8168	0	7.65621	5.89272	15.6336	4.45227	2.73611	3.25344e-08	4.84293e-08	0	4.34584e-08	0	7.7431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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