TCONS_00063284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063284
Unique NameTCONS_00063284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063284 ID=TCONS_00063284|Name=TCONS_00063284|organism=Clytia hemisphaerica|type=transcript|length=315bp
CAAAAACACCATCAGCAAATACAACACCGCCACCGCGGCCTAACCCATAA
AGATCAACCAATAaCCAGTGATAAGAATCACCATCATACCATGTCAACTA
CCAAAACTGATGCTGCTAAAGAAGCAACAGAGACGGGGGTACAACAACAA
GAATCTGAAGATGATTTTAAAGGATATGCATCATTTAGTCCCCCGGATGG
TGGTTTTGGTTGGTGTGTTGTCTTGGCTGCTTTTTCTGTCCAATTCTTTG
TATTGGGAACAATGAACAATTTTGGAATcttgtttacaaaattgttgGAA
GAATTTGGAGAAAGN
Run BLAST on NCBI

transcript from alignment at scaffold_385:348791..357174-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063284 ID=TCONS_00063284|Name=TCONS_00063284|organism=Clytia hemisphaerica|type=transcript|length=8384bp|location=Sequence derived from alignment at scaffold_385:348791..357174- (Clytia hemisphaerica)
CAAAAACACCATCAGCAAATACAACACCGCCACCGCGGCCTAACCCATAA
AGATCAACCAATAGTAAGTTAGAGACATATTAACAGTCTTTTTTATTTCT
ATATTTGATTTTCATAGAATCCGAGCTGGCACACAACGTCATTTCAACGT
TTTTCTAATATTCAAAACGTCCATATAACTTTAGATGAACGTTGAAACAA
CGTTGTGTGCCAGCTGGGATAAGAAAAGCGTATGGAATGGTAATGTCGTT
AGCGTTTCTCTTGTTGAGGGAGGCTTTCAATATTGAGTATCGAATAGGCT
CTTCCAGAAAATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCC
AAGATTAAATATTTTGCTCACTCGTCAAAATAAGTTCCCGCCAAAATTTA
AGTTTTTATTTTCTTGCTTAAATAACCCCTGAAATTCATCAAAATTGCTC
AAAATAAGACAAAATAGAACAAATTTACGCCATCATTCGCAAAAATTAGT
TCCCACCAAAATTAAAAAGTTTCATCATTCGCCAAAATAAGTTCCCGTCA
AAATTAAAAGCCTTTAAGATTTTTGCTGAACGCCAAAATTAGTTCCCGCC
AAAATAAGTTCCCTTAAGTATTAAGGTATTAAATCTAATAATACCATGGC
TCTGTAGAAATCACACTTGCCTCATCCTTTTTTTGGGCAAAGCATGACGA
GGGCAGAACGGATGATCCGTTTTGAGATTTTACATGAAGGATTCATTCTG
ACTGGATTCTTTTAAACTTTTAATCGGATTCTTTATACAAGAGCTTGTTT
TTCTACAAGCAACGAAAGCTATGTCGTGTAGGGACGCTAAAAAAGCAACT
ATGTGGTATAGTATTCATTCACCTTGGTTGGCGGCTAAGGTTCGATTCCC
ACTCGCAACGGTTCACGAACGTTCAGGGTCGGATACAGGAGGTAGGCTAT
CTTATTCATGGAGAGTAATTAGTTTCCATATAAAGTAATACGATAATAAA
GTGCGCTCTCCTCCATTGGTTATAGCCTCCCTCTGTATCCGAGCCTGAAC
GTTCACCGGGGTCAACCCATGCCGTATGAAGGTACCTAGTCTAAAGTGGT
GACATGGTGCTCATTGAAAGCGTCATTAGCTGCAAAAATGGGCCATGGAG
TATCCTGCAACTCAACCAAAAAGAAAAAATAGTATAGAAAGGTCAGTGAA
GAGAAACTTCCTGCTTACTAAAACAAGACTAAAGGGGTAAATGAAATAAA
GGAGATTTTTATGAGTCCATGAGACTAAAATGATTTAAAGTGGCAAATTG
GAAGTCATGTTAAAAATCACGATCTAAGTTTTCTTTTGTAAAAGTATCGA
TTTCAATTTTAAATTAAAAGATTTTATCCAAAAATAAACTTTGACTTTGA
TTCCCACCTGTGATGACAGGCCGTCTTTCAACGGTTATGTGTGTTCAGCG
GAAACCGCATTTTGATAAGAAAACGTCGATTTTTAAGACTCAGCGTCTTT
CTGACCCCGTTTAATTGGAAAGGTTAAGAGTAACTTGGTAAAAAAGAATC
TAGCTATCATTATTTTATTCCATTTTCAAGGTAACGATTCTTAAAAATGA
TCTATTAGAATCAATTATCTAATGTAACTTGAAAACACTGAATTCTAGTT
TAACATTGCAGAGCTACTCACACTTAAAAATTGAATATTCCTATGAATAC
AGTCACGATACTGTTTACAGAACGTCAACTTCCATCAACGGAATGTCAAC
TTCCAAGCAAACAGACACAGCCAGCTAAGATACAAAAGAAAAAGTTTCAC
ATATGTAACCGGTATTACTGGTCTGTCTAACCACAAATTTGAAACAAGTT
TCATAGTTCACACACCACACCTTAGTAAGGGAGGGGGGTAGCGATGTTCA
AAAAATTTCAGAGAGGGGGTTAAGAGAATTAAGTTTTCAGAAGGGGAGGG
CTGGTTGAGCTGTTAGTGCTGCGTTTTTTTAATAGACCTCATCGGAGTTT
TTGATTTTTTTAAATAAGCGATGCATTGTGGGATTGTTTCGAGTGTATTA
CAATAGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAATTCTTT
AGGCGACGAGGATAAAACCCAAAACACCAAACGGGATGGGAAATGCCTGC
TTTTGGTTGTTGGAAATCTTAAATATTGCGTTTTTTTTACAGAGCCCTAG
AGGGGAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTCTTTTGTAAAAGTATCGATTTCAATTTTAAATTAAAA
GATTTTATCCAAAAATAAACTTTGACTTTGATTCCCACCTGTGATGACAG
GCCGTCTTTCAACGGTTATGTGTGTTCAGCGGAAACCGCATTTTGATAAG
AAAACGTCGATTTTTAAGACTCAGCGTCTTTCTGACCCCGTTTAATTGGA
AAGGTTAAGAGTAACTTGGTAAAAAAGAATCTAGCTATCATTATTTTATT
CCATTTTCAAGGTAACGATTCTTAAAAATGATCTATTAGAATCAATTATC
TAATGTAACTTGAAAACACTGAATTCTAGTTTAACATTGCAGAGCTACTC
ACACTTAAAAATTGAATATTCCTATGAATACAGTCACGATACTGTTTACA
GAACGTCAACTTCCATCAACGGAATGTCAACTTCCAAGCAAACAGACATA
ACAAGCTAAAATACAAAAGAAAAAGTTTCACATGTAACCGGTATTACTGG
TCTGTCTAACCAAAAATTTGAAACAAGTTTTATAGTTCGCACACCACCCC
TTAGTAAGGGAGGGGGGTAGCGATGTTCAAAAAATTTCAGAGAGGGGGTT
AAGAGAATCTTTTGTAAAAAGGGGAAAAGTTTTCAGAAGGGGAGGGATGG
TTGAGCTGTTAGTGCTGCTTTTTTTTTAATTCTTAATTGTGGGGGGCGTA
CGAGGGTCCTGGACACCGAAATACCGACAGTTTTTCACAAAATCAACGCA
ATACCGACACGTTTTTTACGAAATACCGACACCGACACCGATTTTTTCAA
GCTGTCGACAAAAGATGAGTTGTATTTCCAAGTAGATAAAAAATGTTATA
TAACATTTTGCTTATTATCATGTTTTTTTTTCAAAATTCTAATATGACAT
ATCACATAGGAGGGATTTCTGAGAAATAACCCTTGATTTTAGCACCGTTT
CTTCGACGTTTTGAGAAAAATTACCGTATCACCGATTGAAAATTTAACAT
TTTCCGTCACCGAAAAGCATCTCAAACACCAAAATATCGACACATTTTTT
GTTAATCACCGAAATACCGACGCAAAAAAAGACACACCGACAAACTGGTA
CGTCCTCCCCCTTAATTCTTTAGGTGACGAGGATAAAATCCAAAACACCA
AAAGGGATGGGAAATGCCTGCTTTTGGTTGTTGGAAATATTAAATATTGC
GTTTTTTTTACAGAGCCCTAGAGGGGAATCCTCAAAATGAAGCTGTAGTG
TTTTGCTTAGCGACAGTTACCACGTGAATCAGTAAAATTGCGTTGGGGCC
AAGATCTTGGGAAAGGTGATTTCACAATGAGGATTGTGAGCAACCAGGTT
GCTTAGGCTTGAGCCCTGAAATTACCCGAAATTATTTTTCCAATATCTAA
TCATGGCAAACAGTAGCCCTTTTAGGCGAGACCAATTAAATTTTTGGTTC
TACGGACAGATCGTTAGAAAAATATGGGTCGGTCGGTCGGCAAAATAAGA
ATAAATTTTTCATTTATCAGGATTAGTAAGGTACCGAGAAAAAGTATTTG
GATCAAAAATTCACTTTGTTTTTTATCTTCGATGAAAATTAGTGTATGGA
ATGCTTTTTATGATTTTTCAATTTCTTGAATTAATTTTCAACTTTATTCA
AGTTTAATTCTTACAAATAACTAGTGTGTAAAATATATTGTAGTGGAAAT
TCGATATTATTATTTTTTTGATTTTAGCAAAAATAGGGTCGGTCGGGCCC
GTAGAACAACAAATTAAATTGGTCTCGCCTATAGTGCTACAATGTTCTTC
GTGTGCACAGACTAACTTTAAACAACTTTTTTAACTGATCAATTAGGTCT
ATAAGATCACAAAAACGAGTGGCGTGAAAATTTTTGACCATTTTGCCTTT
GGGTCCCTTTACCCCTAATGTTATCAACGGTCAATTCGCGAATTTAGGAA
TTTTCGCGGTCAACAGGTACCTTATGCCCCAAGGGTCCCAAAAACCCAAA
AAACGTCAATTTTTTCCAAGGGAAAGTGGGTTTTTCAAATTTGCGAAAGA
TTGGCACTGCAACGACTTCTTCTTAAAAAACGCTAATTTTCACGAAATTT
TCAAAGTTGAAACATTCCAGAGGCTAAACATGGTGGAATAGCGGCTAGAC
GAAAAAAAAGGTGAAAAAAAATTTTGCTTACGCGCATGCGTTTGCCAAAA
GATTAACATTTTAGACTTCAAGCTTATAGGATCTCAGGATGTAAGAGCTC
AAAAATGTTGCAATAAGGCTGAGTAAATAGCCTGGAAGCCACTAACCCCC
TGCCCCCAAATCGAAAAATCCAATGGAACAAAGTGGAAGTACTGAAACTG
CAATTCTCGCCCGATCTTTAAATTTTGAAAAACGTTAAAATACCCAAAAG
TGTCAATATATTTCGGCGCCGATAGTGTGTCATGATTTTCGATCTCCTAG
ATCCGCTGCTGATATTTACTATACAAAAAAAACAAGTCGCAATCCGCATG
ACTAGACTCCAGATAAATTTTGTGGTTTTTGAAAAAAAAGTCAATATTTA
AAGTGGTGCAGAACAATAAATGGATATAATATTTCGAAATGTATTTAGTA
TCACGAAAGTAGACTTTGGTACATGGTGCATGAAAAGGTGGTAGGTAGTT
CAAAGAGTGAAGTTGGAACGATGTAGTAAATTTTGACAGTTTTGTTCGTA
GAATAAAACGTTGCGATGGATTTTGGAGAGGCTTGCACCATAGATTTATA
AAGCCCGAAGGGCTAGATGTCGTGCTTTGGCTGGAAAGTGTGCCGTAGTT
AGGTAGGAAATCCTACCTAGGTCACATGAAATTTACAATAGAATTTTAGA
GCTTGACCAATCAGAAACTTCACGGGTTTTCGAAAACAATAACAGCAGTA
TTTTTGGCGATATTCACTTTTTTTTTTGCTCGGAAGAGCTTAAAGCACGA
CATCTTAGCCCTTTGGGCATTATAAATAATGGCTTTCACTCTGTTACTAT
AAACCACGGAAAATCTGCAAAAAGTTTAAATTGAATTTTGAATTTCAAAA
ATAGGTGTTCGGTGAGGGCAACAAAGTTCTGAGGGTTTTGTAAGCAGCAT
TTTAATTTTAAAAGAAAGGTTTAATCAAGCATTTCTCTTATGGCATTTGT
TATCTTTTGACCCTGTTAAACTCGAGTCCAAATCCCTTTCATTAAGATAC
TTTTCACCGAGTGTTAATGGTTGTCGGCCAGTCGCCACATAAAAGGGTTG
TTTTTTGGGGGTGACGTACGGGTTTTAACGGTATTAGCCTATTTTTCTGC
CGGTGTTGACTTTGATATAGGTCGTTGTTTTGGTAGTAGCGGACCCGATG
CTGTTAACGCTGAATTATTGCAGCAAATCGAAGGAGCAATCTTCCATGTC
CAGTTAGAAGTGATGTGATGGCAGTTTTTTATTTTGAGTTTTTTCAACAG
ATTAAAGATGAAAAATAAAGGTGTTAATAGATTCAGTCCACCTTTTGAGA
TAATCTAATGAGTTCCTTTCTTATAAATAAAGGGACAGAAAAAGAAAAAT
TTCACCGCTGGAAGATGAAACCAATAGGACAAGACTTCAAAATGTCAAAA
AAAAAGAAAATGATAAAAAAATAAAGAAAAGAAAAAAATTTAAATTTTTA
AAATCATAAAATATTCAACGAGACATGCTCCGAAAGCGTGATTGAAAAAA
TATGAAGAATAACAAACAGGGGTTTCCTCAAATGAAAAAACATGGTTTTG
ACCAATCAAAATCAGGCAAAGATATTTATCAACCAATCAGATTTTAGAAA
AAGTCGTGTGACAAAAAATTTAAAAAAAAGTCATGATATATTTTTTTCGG
CTTAAAAATAAATTTTTATCCTAAATTTGGAAAAGTAACAGAAAAGTTTG
TGGGCATGTATGTTCGTTTAGAGTTAGTTTCGTGGAAAATATCTTCTTTT
TTGTTATTTTCTCTTAAAATTTGTAATCGACAATTTTTCAGTAAATATTC
TAACTTTTTTTATTTTTGACAAAATAATCTGTCCCTGCAACACTGTGTCA
GGGGCCGCGGCTCCACTTTTAAAGTGGTAGGGCCATGGTTTAGTGTCTAA
GGAGGTGCCACCATGGTTGGCGCCGAGGGGAGAAATTTTTGAAAATTAGC
CCTTCTAGACTGCCTAAAACAGGTCTTTTCAAGGTTTTTACGCAGAATTT
AGCTGAATCAGTAAATTTTCTTTTTGCTTTGAAAAAATGTGGTCGGGCCA
ATGCCCGGGTGGCCCCCCGCTGCTGCGGCCCCTGTGTGTAGCTCTAGATG
TTTTTTCATCTAGTGGCTTTTAGACTAGAACGGAAGTCAATGGAAACATT
ATTGATAGAGATACGAAAATTGCAGTTTATTCTAGATTAGAATTTTAGGG
CTATTGTATTTTCAGTAATTTTATCTTATTTTCGTTGTTGGACGATACAA
TGTTTTCTTGAAAATTTAACATAGCCATAAAAACATCACACGAAGGTCTT
GACACTGTTTATTTGTTATTTATGAAGTTCAGTAAACCTGTAGAAAATTC
TAAGTAAAACAACATGATTACTGTAGCTCCTAAATTTGAGAACAAGTGCT
AGTCTTTTCATGAGATATCAAGTTTGCAATATGCCTCTTAAAGGTGGAGT
AAATTTCTTGACGGTCATTGTAAAGGCCATACATGAAAAGAATGAACTAC
CTTAGATGGATCAATTTTCGTGTGGTGTAAATCCATTTCATCATATTTCA
TCTTATTTCATAACTTTTTTGAGAAAATCATCCTAAAATATTCTTACAAC
ATTCCTAGGGGTAATTGGAAATTTATAATTGAAAATGCCATGATGGTGAT
ATTCTTAGCATCATTCTTAATTTTTTGGCCATTGTCATCATTCATATAAA
GTGTATTCTTATAAAAAAAACGTGTAATCGTAAAAAATTCCATGTTTTAG
ATTTATAGTATTATTATTTTTTTAATTTCCAGACCAGTGATAAGAATCAC
CATCATACCATGTCAACTACCAAAACTGATGCTGCTAAAGAAGCAACAGA
GACGGGGGTACAACAACAAGAATCTGAAGATGATTTTAAAGGATATGCAT
CATTTAGTCCCCCGGATGGTGGTTTTGGTTGGTGTGTTGTCTTGGCTGCT
TTTTCTGTCCAATTCTTTGTATTGGGAACAATGAACAATTTTGGAATCTT
GTTTACAAAATTGTTGGAAGAATTTGGAGAAAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039658XLOC_039658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063284-exon-scaffold_385-1575043694:357112..357174TCONS_00063284-exon-scaffold_385-1575043694:357112..357174Clytia hemisphaericaexon
TCONS_00063284-exon-scaffold_385-1575043694:348791..349042TCONS_00063284-exon-scaffold_385-1575043694:348791..349042Clytia hemisphaericaexon
TCONS_00063284-exon-scaffold_385-1510915933:357112..357174TCONS_00063284-exon-scaffold_385-1510915933:357112..357174Clytia hemisphaericaexon
TCONS_00063284-exon-scaffold_385-1510915933:348791..349042TCONS_00063284-exon-scaffold_385-1510915933:348791..349042Clytia hemisphaericaexon
TCONS_00063284-exon-scaffold_385-1491911889:357112..357174TCONS_00063284-exon-scaffold_385-1491911889:357112..357174Clytia hemisphaericaexon
TCONS_00063284-exon-scaffold_385-1491911889:348791..349042TCONS_00063284-exon-scaffold_385-1491911889:348791..349042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:348791..357174 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	4.12306	4.69254	1.69835	2.60243	0.665391	1.11268	2.90801	3.42283	0	0.203907	0.753589	1.02987	10.9677	7.10088	3.29023	2.15909	5.32686	10.4473	1.48592	4.41648	1.83531	1.91246	1.01593	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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