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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063281 ID=TCONS_00063281|Name=TCONS_00063281|organism=Clytia hemisphaerica|type=transcript|length=2006bp GACCAGTGATAAGAATCACCATCATACCATGTCCACTACCAAAACTGATG CTGCTAAAGAAGCAACAGAGACGGGGGTACAACACCAAGAATCTGAAGAT GATTTTAAAGGATATGCATCATTTAGTCCCCCGGATGGTGGTTTTGGTTG GTGTGTTGTCTTGGCTGCTTTTTCTGTCCAATTCTTTGTATTGGGAACAA TGAACAATTTTGGAATcttgtttacaaaattgttgGAAGAATTTGGAGAA AGCAAGCAAGCGACCTCATGGGTTGGTTCTATCACTTACGGCCTTATGTT TGGTACTGGCCCAATTGCGACGTCAGTATCAGAGCGTATTGGTTGCCGTC CTGTCGCCATCATCGGGGCCCTTGTCGGCATGGTTGGAACACTTTTAGCC TCATTTTCCGATAGTATCTTCAAGATGTATTTAACAGAAGGCTTTTTATT CGGCGTAGGAGCAAGCCTTTGTTATTTCCCATCTGTCATTATACTACcgc aatatttttacaaaaatctatcAATGGCTAATGGCCTAGTCGCCTGCGGG TCGGGCGTTGGAACCATGGCTATGGGGCCAGTGATCAATTACGTCATTGA GAATTACGGTTGGAGAACTTCCTGTAGAATGACAACTGGTTTATTTCTGA TTTGCGCTTTGATTAGTTTGACTTACAGACCGAATGAAGTCTTACAGCGG ATGTTAAAAAACGCAAGGAAAGACCAGCGACAACCTCTTTTGGACACAAC CGTCTTCCAAAATAAAGGTTTCCTCGCATTCACGGCAGCCTTGTTCATCT TCATGTTGGCATACTTCGTTCCGTTTGTTCACCTGacACAAATGGCACTT GAATATGACATCCCAATGTCCAAAGCCTCTCTCTTAATCGGCTTCATGTC CGTCGCTTCAACATTCGGACGTTTATTTTTCGGTAAGATCGCCGATTTTA AATGCATCAACCGACTTTATATGTACCAGATCGGTCTGCTCGGGATCGGT GTCGCTAACACTATATGCCCGCTACTTAAAAGCTTCCCAGGGCTGCTTGT CTATTGTACTATTTTTGGATTCTTTGAGGGATGTTACGTATGTCAGGTTG CAGTCATCACAGGTGATATTGTTGGCATTGATCGAATGGCGGTGGCTGTT GGCATCCTGTTTGGAATCAAGTCTATCCCATTAACGCTGGGCCCTCCACT GGCAGGCTTTTTATACGACATTTCAAAATCATATCAAGTAGCTTTCTACG TTGCTGGTGCAATCCCTACAGTTGCCAGTATCATGATGTTCGCAGTACCA TTCCTTATCCCACCACAAGACCACCCTTTCTGGAAGAAATACGGGCCGTC GAGACAATATCTCATCAATAGCGACTCGTCAGACGATAGCTGTATCGTTG AAaataacaataacgaaaaaCGCCAATGTGACAAGAAAAAATACGAGCTG GATTCAGATGCAACATCAGTTGGTCACAGTATGGATAGTTTAGATAAAGC TGGACATCCAACTCCACAAAAGACAGTAGCCAATAGATTCTTACTACAAA CAAAGAATGATAAATCGTTTACCTCCATTGGTAGTTTCAATCATTTGGCG CCATTTGAAAATGGACGATTGAGCATGCGTCAAATGGGTAGCATCTCTTC ATTCGGGTCTGTCATTTTCAGTCCTGTTTCACCAATGGCTGGAGCTAGAA GTTCCACTTATGTGGTGGTTGATCGAGTGACGAATGTGTAATCTACAGAC CAGATctgaacaacaaaaaaaaaacgaaaaattatatttaagaaaTATGT TAACACACTATACCGAGACAATATCAATGATACAACAAACAAGAGCAATC AATCATAGTTATTAATTAATGTAGTTAACAAATTGATCTTCTCTTTTATT AAATCTTATAATTTATACTGTAGTACATAATCTTATAATTAAtttgtatt attttttattatagcATATTAATAAATTAGCGATAACGACTAGTTGTATA gttgat Run BLAST on NCBI transcript from alignment at scaffold_385:338425..347719- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063281 ID=TCONS_00063281|Name=TCONS_00063281|organism=Clytia hemisphaerica|type=transcript|length=9295bp|location=Sequence derived from alignment at scaffold_385:338425..347719- (Clytia hemisphaerica) GACCAGTGATAAGAATCACCATCATACCATGTCCACTACCAAAACTGATG
CTGCTAAAGAAGCAACAGAGACGGGGGTACAACACCAAGAATCTGAAGAT
GATTTTAAAGGATATGCATCATTTAGTCCCCCGGATGGTGGTTTTGGTTG
GTGTGTTGTCTTGGCTGCTTTTTCTGTCCAATTCTTTGTATTGGGAACAA
TGAACAATTTTGGAATCTTGTTTACAAAATTGTTGGAAGAATTTGGAGAA
AGCAAGCAAGCGACCTGTAAGTTCAATGATTCTTTATCGTGGGTAGGCTC
AAAAGGTATTCTAGTGTAGATTTTTCTCCTGGTTGCACGCTTGCGCTCGA
ATGGATAGTAATTCGGGGGAAAGTGATCAAGAATTTTAACCGTTCAGACC
CGAATGACGTACATGAACGTCCAAAATGAGCTCATATACCATATCTCAGA
CTTAATAAGGACATAGCTCCTGACCACTTGATTTAAAATGGCATACTCTC
GGGTACCTAATAGCCGGGGGGGGGTTGGAAAAAATCTCAAAACCTAATAA
GTGGGGGGGGTTGGAATAAAAATGTCCTGGGTGGAAGATTTTTGAAAAGG
AGGCTAATACAGCAGAATTAGGACTAGACGATGTTATCGTCCGTTTACAG
TGATAATAAAGGTGGGAAAAATGGCGGTATGGCGTTATGGCGGTATACGG
AAAAAAATCGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CCCCCCCCCCGACAGCAACCCCTCATTAAGCTATCACGCAAAATATCTTG
TTCTTGTCACGATCAAGAAAAAAAGCAGAATTTGTTCATCTTACAAAAAT
AGTGAAAAATAGACCATTTCAATTACTTTTGAATTTGGATCACGTCAGAC
GCAAGAAAAATCTCCTCATCAAGTCATCACTCTAACAATCTGGGAAAAAA
GAATTCTCGATTTAGAAGTTACAATCAAAAGTTTATCAAAACAAAGCTCT
GAATCAGCTGTTAATGGCTGAATATGAGCACGGACTGCCAATTTCGGAAC
CGAGTTTTAAAATTGGTATTTTATTTTAATTGGAGTTTTAAAGTTCGTTG
TACCGCAGGTGTCAGTTTTTTTTAATTGAACTCAAAATACAAAACAGAAA
TTTTCAGGAGCTATTTTATCAAAAATATGGCAAAATACAGTTGAGTCTGC
ATAACTCAAACAAGCACGGGGAAAAAAAATTTGGAGCAAGGTTTATAGCA
TGTTGTTAACTGAAGGGACCATAAAACTTGTTTGAATTAAGGAGATATTC
GAGTTATAGTGGTTTGAGTTAAAGAAATCCCACTGTAAAATAGCGATTTT
TTTCCGTGGGCCCATATTTCGCATTAGCAAACCCCTTTTTTCAAGTTCCT
TTATTTCTAATTTTGTATCAAATCCTACCTTTATCTTATGAATTATTTAA
AACAGACTTTCCCGAAAAATAATAACATTTTGAATTATTTTGATTCTCGA
CCAAAGAAAAACCCGTCAAAGCACCCTCAAAGAAAACCCCATAATCAACT
CTAGATATAGGATTTCGTGTCACAAATAAGACAGACGGTTGTTCTCCATA
AGAAATCTATTCCTATTTTCCCCTTGAGTAGATATTTTCTTTTTCATCGG
CGGAACCCTATTTCACGCATTACATGTTTTTTATAAGAACAAACAATATA
AGAACATAAGGCTTCGCTTGCCAAAATGTTAAGAACATTTTAAGGCTTTG
TGGACTCAAAAACACCCTATTTCTTAGAATTTCTGGTGAAAATAAGAACA
TGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATCCGAA
GGCTTCAAAAATTTTGGATGTTCTTATAAAAAAACGTGTAGAAGAAAGCA
TTCAACATGTCACTTGTCTCGATAAACCTACTGCTCATTTTTTACTTAAA
AGTCTGCGAAATAGGTCAAAACAAGTTTAACAGGTTTCTATCTATCAAAA
CACCCTTCAAACGATATCATCCCTTAAAAGTTGATAAGAGCGTGGATCAT
ATGCCGCAGTAGAATGTTTTATTTTTTTGTAAACACTGCTTATTTTAGGG
TGTAAAAAAAGCAAAGGGGCCAAAATCCCCCTAAAAAACAGTAAAACATT
TTCTTCCGCTGAAGCTTTGAAGATTTGGAATTAATTCAAAGAAAAACTTG
AGTTTTCGTTTGATCGATGTCACGTCAAAAATCTACAGTAGTTTCTTTTC
GGGGAAAAGATCAGGATACAGTAGCTGGTGAAAGCATCTTCGGTTTTTAT
GCAAATAGGGATGTTATTTTGGCCAGTCGAAAAGTAGGGAAAATAAATCC
ACCTCAAAAATGAAATGAATGAACATAATCTTTATAAGCTTGGCTGGAGA
TTTACGAAAAAGGACAACCCGCTTTTATTTGATTTTTTGAAGAAAAGTCA
GTGATACGCTGTCGAGTTTTTGGAAAAAAAAAGAAAGAAATTTCCACAAA
AAATAAATCAGATTCAGATAGCCTTTCTCGGGGTTCTCCTATTTTTGAAG
ATCTAAAAGAAAAGTTTTGCATTAGAGTCTCTTTAACTCGAACAACATTC
ATTGTATTCTCCTTAACTCCATAATATTTTTGGCTCTTTCATAAATTAAA
CTTTAAACACCAGAGTTTCAATAACTCGAACAAATTTGTGTTCCAGCCGA
TAGTGCATTTCAAGTTATTGGACTCTACTCTACCTTACTTAGTGGAGGCT
CCCGCAGTCACCTTTCAAATCACGCAATCACGCAAAAAAGATTCCAAATC
ACGTTATCACGAGTTAAATTTCCTTTATGTCCCGATCACGTTGATCACGT
TGGCTCCTCCGATCACGCAATCACGCACTTTAAAATCTTAAATCACGAAA
TCACGAACTTGAAAAAGCGCCAATCACGCCATCACGAAAACCCACTGGGG
AGGCCTCTTAGTGGCTGTCTAAAAACGAATTTATAATCATAGAGTAACTT
TTAATCTTTAATTATAATCGTGTGAGGAGCCTAATGTACGTCTACTGCAG
CATCCCAACTGGCACATAACGTTGTTCCAACGTCCATCTAACGTTAGATG
GATTTTACGGACGTTGAAACAACATTATTTTGACGTTCTGTGCAAACTGG
GACCCCTTGATTCGTAAAAAAATCTAACTAACTGAATTCAAATTAAAATT
TTGTATTTCCTCATTTTCAGCATGGGTTGGTTCTATCACTTACGGCCTTA
TGTTTGGTACTGGCCCAATTGCGACGTCAGTATCAGAGCGTATTGGTTGC
CGTCCTGTCGCCATCATCGGGGCCCTTGTCGGCATGGTTGGAACACTTTT
AGCCTCATTTTCCGATAGTATCTTCAAGATGTATTTAACAGAAGGCTTTT
TATTCGGCGTAGGAGCAAGCCTTTGTTATTTCCCATCTGTCATTATACTA
CCGCAATATTTTTACAAAAATCTATCAATGGCTAATGGCCTAGTCGCCTG
CGGGTCGGGCGTTGGAACCATGGCTATGGGGCCAGTGATCAATTACGTCA
TTGAGAATTACGGTTGGAGAACTTCCTGTAGAATGACAACTGGTTTATTT
CTGATTTGCGCTTTGATTAGTTTGACTTACAGACCGAATGAAGTCTTACA
GCGGATGTTAAAAAACGCAAGGAAAGACCAGCGACAACCTCTTTTGGACA
CAACCGTCTTCCAAAATAAAGGTTTCCTCGCATTCACGGCAGCCTTGTTC
ATCTTCATGTTGGCATACTTCGTTCCGTTTGTTCACCTGGTAAGCTCAAG
AATTCTTGTTTCTGATAAATAAATGGGACTCCTGATAGCCCGAGGTTTGG
AAATTGTGCTTTTGACTGAATACCCCGAAATGCGGTTTGTCATTCTACAA
TTTTTGAAAATGCGACAGTTTTTTAAGAAATCTCTGCAGTTTGAATAAAA
TCACGTACCCCGCGATCTCAATAATTCTCTCTGTGGGAGAGAGATATATT
TCAGTGCACTTCCAAGAATTAAATATCCATGCTAGCTAGTTCATATGAAT
CACATTCTAATTTTACTCTTATTTATTTCTTTTTTATTTAGACACAAATG
GCACTTGAATATGACATCCCAATGTCCAAAGCCTCCCTCTTAATCGGCTT
CATGTCCGTCGCTTCAACATTCGGACGTTTATTTTTCGGTAAAATCGCCG
ATTTTAAATGCATCAACCGACTTTATATGTACCAGATCGGTCTGCTCGGG
ATCGGTGTCGCTAACACTATATGCCCGCTACTTAAAAGCTTCCCAGGGCT
GCTTGTCTATTGTACTATTTTTGGATTCTTTGAGGGATGTTACGTATGTC
AGGTTGCAGTCATCACAGGTGATATTGTTGGCATTGATCGAATGGCGGTG
GCTGTTGGCATCCTGTTTGGAATCAAGTCTATCCCATTAACGCTGGGCCC
TCCACTGGCAGGTAAGGAATTTTATCTTTAAATTGACTTGTTTTTTTTTT
CAGGAAAGACTGTGCTATCATAGTCTTCGAAGACCGACGAGACCAAAAAA
TNACTCGCTACTTAGCCATATTTCTAAAACAATCTCAATAATTCTCTCTG
TTGGGGAAAGATATTTCAGTGCACTTCCAAGAATTAAATATCCATGCTAG
CTAAGATCATATGAATCGCATTCTAATTTTACTCTTATTTATTTCTTTTT
TATTTAGACACAAATGGCACTTGAATATGACATCCCAATGTCCAAAGCCT
CTCTCTTAATCGGCTTCATGTCCGTCGCTTCAACATTCGGACGTTTATTT
TTCGGTAAGATCGCCGATTTTAAATGCATCAACCGACTTTATATGTACCA
GATCGGTCTGCTCGGGATCGGTGTCGCTAACACTATATGCCCGCTACTTA
AAAGCTTCCCAGGGCTGCTTGTCTATTGTACTATTTTTGGATTCTTTGAG
GGATGTTACGTATGTCAGGTTGCAGTCATCACAGGTGATATTGTTGGCAT
TGATCGAATGGCGGTGGCTGTTGGCATCCTGTTTGGAATCAAGTCTATCC
CATTAACGCTGGGCCCTCCACTGGCAGGTAAGGAATTTTATCTTTAAATT
GACTTGTTTTTTTTTTCAGGAAAGACTGTGCTATCATAGTCTTCGAAGAC
CGACGAGACCAAAAAATAAGAAACAACCTTTAAAAAAGAACCCTATAAGC
CTGGAATTACTAATTAAATGCAAAATAGTGAAAATAGAGTATCAAGCATA
TCTCAAACTACCTAAAAATAATATTATTATAGAGAATATCATAAGAACAA
TTTGAGGCTCAAAGTGTCGAAGAATAAGAAAAACTCAGCCTCAACAGTTT
ATAGTGTATAAAAGGAATCAAGTTATATCAATTTTATCCTTCAGGCTTTT
TATACGACATTTCAAAATCATATCAAGTAGCTTTCTACGTTGCTGGTGCA
ATCCCTACAGTTGCCAGTATCATGATGTTCGCAGTACCATTCCTTATCCC
ACCACAAGACCACCCTTTCTGGAAGAAATACGGGCCGTCGAGACAATATC
TCATCAATAGCGACTCGTCAGACGATAGCTGTATCGTTGAAAATAACAAT
AACGAAAAACGCCAATGTGACAAGAAAAAATACGAGCTGGATTCAGATGC
AACATCAGTTGGTCACAGTATGGATAGTTTAGATAAAGCTGGACATCCAA
CTCCACAAAAGACAGTAGCCAATAGATTCTTACTACAAACAAAGAATGAT
AAATCGTTTACCTCCATTGGTAGTTTCAATCATTTGGCGCCATTTGAAAA
TGGACGATTGAGCATGCGTCAAATGGGTAGCATCTCTTCATTCGGGTCTG
TCATTTTCAGTCCTGTTTCACCAATGGCTGGAGCTAGAAGTTCCACTTAT
GTGGTGGTTGATCGAGTGACGAATGTGTAATCTACAGACCAGATCTGAAC
AACAAAAAAAAAACGAAAAATTATATTTAAGAAATATGTTAACACACTAT
ACCGAGACAATATCAATGATACAACAAACAAGAGCAATCAATCATAGTTA
TTAATTAATGTAGTTAACAAATTGATCTTCTCTTTTATTAAATCTTATAA
TTTATACTGTAGTACATAATCTTATAATTAATTTGTATTATTTTTTATTA
TAGCATATTAATAAATTAGCGATAACGACTAGTTGTATAGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063281-exon-scaffold_385-1575043694:347454..347719 | TCONS_00063281-exon-scaffold_385-1575043694:347454..347719 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1575043694:340831..341399 | TCONS_00063281-exon-scaffold_385-1575043694:340831..341399 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1575043694:340505..340528 | TCONS_00063281-exon-scaffold_385-1575043694:340505..340528 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1575043694:339543..339888 | TCONS_00063281-exon-scaffold_385-1575043694:339543..339888 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1575043694:338425..339225 | TCONS_00063281-exon-scaffold_385-1575043694:338425..339225 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1510915933:347454..347719 | TCONS_00063281-exon-scaffold_385-1510915933:347454..347719 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1510915933:340831..341399 | TCONS_00063281-exon-scaffold_385-1510915933:340831..341399 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1510915933:340505..340528 | TCONS_00063281-exon-scaffold_385-1510915933:340505..340528 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1510915933:339543..339888 | TCONS_00063281-exon-scaffold_385-1510915933:339543..339888 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1510915933:338425..339225 | TCONS_00063281-exon-scaffold_385-1510915933:338425..339225 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1491911889:347454..347719 | TCONS_00063281-exon-scaffold_385-1491911889:347454..347719 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1491911889:340831..341399 | TCONS_00063281-exon-scaffold_385-1491911889:340831..341399 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1491911889:340505..340528 | TCONS_00063281-exon-scaffold_385-1491911889:340505..340528 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1491911889:339543..339888 | TCONS_00063281-exon-scaffold_385-1491911889:339543..339888 | Clytia hemisphaerica | exon |
TCONS_00063281-exon-scaffold_385-1491911889:338425..339225 | TCONS_00063281-exon-scaffold_385-1491911889:338425..339225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_385 | supercontig | scaffold_385:338425..347719 - |
Blast
BLAST of TCONS_00063281 vs. Swiss-Prot (Human)
Match: MOT10 (Monocarboxylate transporter 10 OS=Homo sapiens GN=SLC16A10 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 4.480e-66 Identity = 135/422 (31.99%), Postives = 218/422 (51.66%), Query Frame = 2
Query: 137 GGFGWCVVLAAFSVQFFVLGTMNNFGILFTKLLEEFGESKQ-----ATSWVGSITYGLMFGTGPIATSVSERIGCRPVAIIGALVGMVGTLLASFSDSIFKMYLTEGFLFGVGASLCYFPSVIILPQYFYKNLSMANGLVACGSGVGTMAMGPVINYVIENYGWRTSCRMTTGLFLICALISLTYRPNEVLQR----------MLKNARKDQRQPLLDTTVFQNKGFLAFTAALFIFMLAYFVPFVHLTQMALEYDIPMSKASLLIGFMSVASTFGRLFFGKIADF-KCINRLYMYQIGLLGIGVANTICPLLKSFPGLLVYCTIFGFFEGCYVCQVAVITGDIVGIDRMAVAVGILFGIKSIPLTLGPPLAGFLYDISKSYQVAFYVAGAIPTVASIMMFAVPFLIPPQDHPFWKKYGPSR 1354
GG+GW V+LAA V G N G+LF +LE FG T+WVGS++ G++F PI + ++ GCR A++GA VG VG + +SF SI +YLT G +F G S Y PS++IL YF K L + NG+V GS V T+ + ++ +I++ G + R+ + L TYRP + + + + + + +F+ + + + + + YFVP+VHL + E +++ + V S GRL FG+IAD+ + ++Y+ + IG+ + + PL F L+ C I G F+GC++ +A I ++VG ++ A+G L G SIP+T+GPP+AG L D SY VAFY+AG P + ++ +P++ + K G +
Sbjct: 67 GGWGWLVMLAAMWCNGSVFGIQNACGVLFVSMLETFGSKDDDKMVFKTAWVGSLSMGMIFFCCPIVSVFTDLFGCRKTAVVGAAVGFVGLMSSSFVSSIEPLYLTYGIIFACGCSFAYQPSLVILGHYFKKRLGLVNGIVTAGSSVFTILLPLLLRVLIDSVGLFYTLRVLCIFMFVLFLAGFTYRPLATSTKDKESGGSGSSLFSRKKFSPPKKIFNFAIFKVTAYAVWAVGIPLALFGYFVPYVHLMKHVNERFQDEKNKEVVLMCIGVTSGVGRLLFGRIADYVPGVKKVYLQVLSFFFIGLMSMMIPLCSIFGALIAVCLIMGLFDGCFISIMAPIAFELVGAQDVSQAIGFLLGFMSIPMTVGPPIAGLLRDKLGSYDVAFYLAGVPPLIGGAVLCFIPWIHSKKQREISKTTGKEK 488
The following BLAST results are available for this feature:
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