TCONS_00063279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063279
Unique NameTCONS_00063279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063279 ID=TCONS_00063279|Name=TCONS_00063279|organism=Clytia hemisphaerica|type=transcript|length=1838bp
GAAGAAAGTAGTTGTTTTCGTTCCATTTTTTGTTCCGACTTCTATTAGAA
CAGCTATTGTCATgttaatattttaaaataatattccCTTTCATTTTCTA
GAGCTCAAGGTATTCTTAAACCACCTATAGACGTTTTCAATCAGAATCCG
CCCATCAGCGCCCTTCCGCCTAAACTACCAGACACACTGGGTGAACTGCT
TGCAGAATACAATCTTCAAATGTATTTACCGAAGCTGGAAGGTGAAGGGT
TGGATGTAGCGACATTCTTGGAACTATGTGATAATGATTTGAAAGAATTG
GGAATTGATAAATTCGGACCACGTAAAAAGATGTTGTTAGCAATACGTGA
ATGCAAGGAACGAATGGCTGTTCACGACCCTAACATCGATCAGGTGCAAG
TGGACCAATATCAAGTTCGTATAAGAGATCTAACAATGCATTTACAGCAg
GCGCTGGCATACTGTAAGAACTATCAAACTCAATTATATCAAGAACAACA
ATACCGTCAAGAGTTTGGTAATTATCTTGAAGCAGAAGCACAAAGAATGA
AACAaatcttcttttattcaaataaCATTGGAAAGAATTGTAAAGAAGCA
AGCGCACAACTTCGAAAAATGAAGGAATACATCAACCAGTTCAGCATGTT
TCTACAAAAATTCAAAGACCATCCGAACTTTTTAAATCTTTCAAACGAAC
TACATATAGACACTTCAGTATTTGAAGCTgtgaaaaatttacaatgtGAA
GTTGAAATGGCTGGTAATCGACTTGACATGACTTTTAAACAAGTTGAACG
CACACTAATGATAGCTCAATTGGAAATTCCTAATAATCAACAACAACTAC
AACagcaaccacaacaacaacagacTGCAAATCCTCAACAGCAACACCAA
CATCAACAACAAGCTCATCCTCAACATCACACACAACAAAATCCTCAACA
ACATCCACAACACTTTACTTCTTAAAGAAATATCAACATTTGTATCAGca
tcttttaaaaataattattgataATAAATGAATCCTCAGAAATATCAGTT
TTGGCAACAAGTCATTCCTCAACACCACATCAACAGCATTTACAACATGC
TTCTTAAAAGAATATCAACATTAACATCAGCACCCTTCAGAAATAATTAT
TGATAATCAACAAACAGCAGAATGAAAATCCTCACACCAGCATTGACTAG
TCATCCATCTCAACAAAACACTCAACAATCTCCTCAACAAAACACTCAAC
AATCTCCTCAAGAACACCCAAACATTATGTCTATTAGCCACCATGCAATG
ATAATCAACTTCATACCGTATTAGCAACAAAAAACCTTGCAATCACCAAC
AAACTTCTCCACAACATCCACATATTATTGTGATATATCAACATCATCAA
TGAGAGACCAGGAATAGACTGTCGATTGTCATTAACATATGATCTGGTTT
GGAGAACTGATTATCGCAACAACAGAAGTCTGATATATCCTCCATCCGAG
TCTTAAGTATTATCCATCTATTGGCACCTATCAAACCATTATGTTCACGA
TCACTATAAGTTCTAGGATATCAGGATTTTGATGCAAGATAAAATTCGAA
GAGTATTTCAAATAGAAGCTTTTAAGCATATACTTGTTGTTTTTATTCGT
TTCTCcaaattgacaatttttaagataatttttttttaccagcACTTTAT
TTACCATATAAATTATTATAACAATTATAATAAGATATTtttaattcgaa
tattttttgTCCTGTTTGTAAGCCTTTTTGCATATAAAGGAAGTTCTTTA
TGAATTGGGTACCTCATATTCCTTAAAATATTGAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00063279-protein

>TCONS_00063279-protein ID=TCONS_00063279-protein|Name=TCONS_00063279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MYLPKLEGEGLDVATFLELCDNDLKELGIDKFGPRKKMLLAIRECKERMA
VHDPNIDQVQVDQYQVRIRDLTMHLQQALAYCKNYQTQLYQEQQYRQEFG
NYLEAEAQRMKQIFFYSNNIGKNCKEASAQLRKMKEYINQFSMFLQKFKD
HPNFLNLSNELHIDTSVFEAVKNLQCEVEMAGNRLDMTFKQVERTLMIAQ
LEIPNNQQQLQQQPQQQQTANPQQQHQHQQQAHPQHHTQQNPQQHPQHFT
S
Run BLAST on NCBI

transcript from alignment at scaffold_385:270072..279044-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063279 ID=TCONS_00063279|Name=TCONS_00063279|organism=Clytia hemisphaerica|type=transcript|length=8973bp|location=Sequence derived from alignment at scaffold_385:270072..279044- (Clytia hemisphaerica)
GAAGAAAGTAGTTGTTTTCGTTCCATTTTTTGTTCCGACTTCTATTAGAA
CAGCTATTGTCATGTTAATATTTTAAAATAATATTCCCTTTCATTTTCTA
GAGCTCAAGGTATTCTTAAACCACCTATAGACGTTTTCAATCAGAATCCG
CCCATCAGCGCCCTTCCGCCTAAACTACCAGACACACTGGGTGAACTGCT
TGCAGAATACAATCTTCAAATGTATTTACCGAAGCTGGAAGGTGAAGGGT
TGGATGTAGCGACATTCTTGGAACTATGTGATAATGATTTGAAAGAATTG
GGAATTGAGTAAGTTGTTGCGCTCTCTAAGGCGGCGGTTACACAGAGCCG
GGTGAAATTTTGAAAAATATCACCCCAGGTAGAATATCACTATGGTCTTT
AAGACAACACTCTTTCTGTATACACATATTTAGGCGGGGTGAAATCGCTT
TTTTGGCTGGGTTAATTCCGCCCGGTCCTGAGGACCGGATTGAAATTTTT
TTATGATTTTTTTTGCAAATTTTTGAAGATTCTTAAATGTATGCACAATT
TCTTTTTTGCACCTGGAGTGAAAATAAGTTGAAAAAAAAACTTCTTTTAA
TTAGTAGAGTGATCGAATTAAGCAGTCAGCATATAGTTTAAACGTGATTG
TATTTTTCATATATCCGAAAAACGTCTTTCATGACATTCAGAATAATTTG
TTCACCTTTATATCCATCCTTGATTATTTTCCCCTTTTTGCTTTTTCAGT
AAATTCGGACCACGTAAAAAGATGTTGTTAGCAATACGTGAATGCAAGGA
ACGAATGGCTGTTCACGACCCTAACGTAAGTCTTTTCAATCTAATATCTC
AAGAAAAATGTTTTCTCATTTCAAGACTTGATTTACGAAATGAGCTCTCT
GCCGGGGCAAACAAATGCATTAAAAAGTGCTAGCTCTATTGTAGTTGTGC
TGTACAGATGTATGAAATTTTGCTGATTTGATCCAGTCTAATGTCTTTAT
TTTCATCTTCCAGACGACATTTTTATTTCTACACTTTACTTTCCATCCAC
AGATCATCTATAGATCCCTTCTTTCGATTTATTTTAACCCTTTTAGTACC
ACTGCTTTTTTGATTCTCTTATTTTGGAAAATTGTTTAGCTCGAAATCTT
ATTGATTGGATAGACGGGAAAGGTGCCCATTATGAAAATTGAGATTAATT
CACTACAAGATGGAATCGAGTAAAATGTTAGACGATCCTATCGTCTACAC
AAGATCACTGAAAAAGGGAATAGTTTAGGAGAGGCGTGATAAATTCGGGT
GGAGTAAGCAGTGGCGGAGAGGTTTACAGTGTAGACGATACCAATTTGGC
GCAAAAGAAAAAAACTGAAAAAAGTCGAGGATTTGCCTTTGCGTATTATT
GACGATTCGGTTCAACCATTTTCAAAACATTCGAAAGCGTAACGTACAGT
ATATCCACTCTTATTTTTCTACACTGGCTGAAGGAATTTCTTGCATGAAA
TTCTTCTCTTTATGGGTTTATTTTGTAGCTCAAATTTAGAATGTTAGTTT
GCAATTTATTTGCAACAAGTATTTAAATTTTAAGAGCCATGCTTCATATG
TTTGACATACTTCAGAAATAAGTCACCACAAAGACTAACAGGTTTGTTGT
TAATATTTTTTACTTCCAACCTTCATTTTTCTTCTTTTTAACTACAGTAA
TTTAACTCAAAGACACCACACTTGCTGTACATTTAGTATCATTGTACACA
TATCCCTTCTGATAAAAACAGCTTTTTACCTTCTTTTCAATACTCCCTAT
TTTTGTTTTGTTAGAAATTCTACAAGTTACCAATTTTTAACTTTTATATT
TTTTATATTTGACATGTTCAGTAGTATAGAAGTATAATTATAGCCACAGG
AAATCATTTTGAAGTTTTTAATTTTTGTTTGTCTGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAAATCATTACAGGAT
AGTTTGACAATTGAAGACAATTTGTTTACAATATTTTCCACCATACATAT
TCTATATTTAAAGATGATTATATTCTGGTCTTAGGTGGAAGACGTTCATG
GTACAGCAAGATGCTGTTATTGCTACCATACAGTGCTACTTGAAAGTCTT
ATCCAAATCCTAGCTGGAAAAAATGATTATCTAAAAAAAGATAAAATATT
TTATTTTCTCAGACATATCGTACTACATATTCTACAAATGGCCTTTCAAT
TGCTTTTAATCGGCTGATTGGAGTAAAAACTGNNNCAGTAATCTCTAAAT
TAAAAAAAAAAATTTTCCTGATTTCCTATATAAATTTTTAAAAATAAGGA
TAAAATTTTAGTTTTAGTTCTGTTTTGCTAACTTCTTTATATAAACATTA
TACTGTCTGCTATTGCGAAACCATATTTTACATTAACTTANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTACTGAATTCTCATAGTGATATGTTTGTAAAA
AATCTGTGTCGGGTTTGAAAAATCAAAAGAAACGGTCGCCAGCCGCGACA
AAATTACGACAAATAAGTCCAAAAACGATCATTTTCAGTCATAATACTGT
GAAAATTTCTCCAATCTTGTTCAAATTTACACAGGAATTGTGTTTTAGTA
TCCTTTACTGAATTCTCATAGTGATATGTTTGTAAAAAATCTGTGTCGGG
TTTGAAAAATCAAAAGGAACGGTCGCCAGCCGCGATGAAATTACAACAGG
TCCAAAAATGATAATTTTCAGCCATAACACTGTCTGACTGTGAAAATTTC
TCCAATCTTGTTAAAATTTACACAGGAACTGTGTTTCAGTATCCTTTATT
GGATTCTCATAGTGATATGTTTGTAAAAAATCTGTGTAGGGTTTGAAAAA
TCAAAAGGAACGGTCGCCAGCCGATGATGAATACGACAATAACAAAGTCC
AAAACAGGATCATTTTCAGCCATGGATACATAATACCACAAAAAATACTG
TGTATCAATGGCTGTGTGTTTGAAAGTTTCATTGTCAAGTTTGAAAATCC
AAAAGGGACAACCACCAATTAAATTATATCATCATGAAAAATGTCCAAAA
GTCCAAAATAGATCATTTTTACAGCATAAAATCATGAGAAACACACGTAT
TTGAATTCAGTATACAGTACAACGTACAACGCACCATCAAACTTCTCATA
AATCATGTCCAAAACATCATGAATAAGGATGAAAATGATCAATTTTTCAC
TGAGATTTGCCAGTATACGTGCCAGTATTTGCTACACAGTCAGCTAGTCC
ACTTTCGATCTGTTTCGATAGCCATCTTTTTCTAAATACTTTTCGGCCAA
TCAAATCACAGTATTATCGGAATCAGTGATCCGTTTTTGTTAAATCGGAA
TAGANTTAGCTAACCATTATTTTTTTCTGCTGGGATAATACTTGGAGAAG
AGTAGGATAAACCAAATAAAATGGTACAATAGTGTGTATGTAATAAATAG
TGTTATATTTGGAAAAAACCTGTNAAAAATGTCTTAACCCTTGTCGGAAG
AGAGAATTAAAGGCTCCTAGGCCGGAGCAAAAATTTTGTGGCTGAATGTC
TTGACCTGTAGTAGAATAGTAAAGGAAAAACAATGTTTGAGAATGTGTAA
GTACAATTTTTACATTTTACCCTAACCACAACAAGTAGAAAACAACAAAT
TAGTCACTTATATAGAAAAATTTCTCAAAAATTAAATAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTCATTTAACGTACAGAACAATTTTCCAACCACGTTCTACT
GGTTCAATTTCACAAATTTCACAAATTACATAAAATAACACGAAATAATT
TTATAAAAAGTTATATAAGCAGTAGGGAAACTTATTACCAAAACCTTTTT
GGTGACTTCACAAAAACATTTTTGGTTAACTCTAGATATGCACCATTGTC
TTCCACAGCTGATTGGTTGAAAGTGACGTATTGACTTATTTTACGTCACT
TACAACGAATCACCTATTGGGTACGTGATGTAATGTCAGAAGACCTTGGA
ATGGCACATATCGTGAATTTGCAGTGAATAGGTGCAATCCATTGAAGTGG
CAATCTGAACACCCAATAAATAAGAAGAATTAGAATTTGTAACACCAGTT
CTAAAAAATTCTATTCATAGAAACTTGGGGAAATAAAATACTAGATTAGA
AACAAACATGAAAAAATTTACATGAAGGAAAGTATTTTCAATCAAAAATC
AAAAAGTAGTTTGAGGTATAAAGTAGTTGAGAAGAGTGAGAATATGTGAA
AATTATATGCTCGTGCTCATAAACCACATAAAAGCACAAGCTGAAAATTT
TAAGGAATGGAAAGAATGGAAAACATACCTGATTAAAATGGAATCTTGAG
GGGAAAGTCAGTCAGGTTGTTGTTCATCATATTCAAAACGATTTTTCCAA
AAGCAAATCTTGAGGAATCTAATCCCTACTGACACACTAAAGACTTATAT
ACTGTACACAAAAATTCATGCATAAAATAAAAGACTAATAAAAGTAGAAA
TTGTTCTCCACCATGAAAATAAATCTCATAAAAACAAAAGAGTGAAATTT
CATCAGCCATCTTTCTCAAACTTTCAGCTGTTTGCACTCACTTCGATCAA
AAAACGCAAACGGAAAATCTCGAAAACCCGCTGACCTCTCTCAGAGGTCA
GTCAGGCAAGGATTTTTATATTGAGGTGCGCCAAATTGGTATCGTCCGTT
TTGTTCCAAAACTCTAACTACCGCCACTTTTTTCCCGTAAACCGCCCTGA
CTCTTTCTCGCATTTACTTTAAACGGACGATAGCATCGTCTAGTAAAATG
TTTGCTGGTTTTTGTTCACTCTTTGACCCTTTGGTCGAATAACAATAAAT
AAAACATTCCTTACGAAATTTTGACCAGATTTTGACTTTGACAAATCCTT
TTACAATATTTTTCTCACCATGAGATCAAAATCTTGGTCGAAGTCTCAGT
CCAATGTCTTCCTTTACATCTTCAAACTACATTTTTATTCACTTTACTTT
CCATCCACAGATCGATCAGGTGCAAGTGGACCAATATCAAGTTCGTATAA
GAGATCTAACAATGCATTTACAGCAGGTAAAATGTTTTAAAAAATTCATA
ATGAGAGAGCTGTGATACGAGCCCTCCCCATTGGGGGAGGATGATAGAGC
TACATTTTTGTATACACATTTTATATAGCTATGAAGTGACAAAATGAATT
CTTCACTTACTGAGAATATTAGTCTATACCCCTGTCTTTTGAAGCATGTG
ATTTATCTCCCAAAAGCGAAGTTCCCTTACCGAAAATCTTACAAGAAATA
AAAATCCTAGAGACAATAATAAGATGATAAGTTTTCGAAATTGGCTCAGA
AATATTTTAAAGAATAACTGGCTAAAATTTTGATAAATACACTCTCTTGA
TTTTGGTACTCTAAAACAAATTTAATGCACGGGTTTCGAATTAAACTGAA
TTATCGTTTTTGAGTTTTTGGCTGTTATAGTGACCCATACAGTATGCCAA
AATGGAAAAATTAGCTAAAATCGCTTGTCGCACGGCCACTGTTTTGTTTA
TATGATTTTTGTTCGTGCAAATTACATGGGATCAAATCAAAAGCTACGCA
AAAATCTAATTCGAAATCCGTGTATTTACGTTGCTTTGGACTACCCGGTA
TCATAGCTTGGTTTTTGTTTCCTTCCAGGCGCTGGCATACTGTAAGAACT
ATCAAACTCAATTATATCAAGAACAACAATACCGTCAAGAGTTTGGTAAT
TATCTTGAAGCAGAAGCACAAAGAATGAAACAAATCTTCTTTTATTCAAA
TAACATTGGAAAGAATTGTAAAGAAGCAAGCGCACAACTTCGAAAAATGA
AGTACGGTGATTTTTTATTTTTTATTTTTCATTTGAGCCCTAGGAATGAG
TACTTTCAGCCCCGCTAATTAAATTTTCGTAAATTTCCAGCCAGGACATT
CTTATTCTAACCCCTCCGCTTATTGAGTTTTTATTACTCGGGGCTTCGCC
CGAGTGGTCTATATAGTGTCAGCAGCCGAAACCATGGGGTTCCCAGTTCG
AATCACTGCTCGTTTCATGTTTTATCAAATATCGGAGAGGCCGGCTGTGG
CCCAACTGAAAACAATTCAAAGACTGGCCAAAAGTCCTTAATTACCTGGG
CTATCGAAACGTAAAATTAGTGTATTTTAGCTAAATCTCTAGCAGCATTT
TCTTACTAAGCTAACTGACTTACCTTTGCTCACTATAAAGAAATTAGTTA
GCTGTCCTAACAAATAGATGTTGATTTACTAAAGCAAATATAATTTTATT
GGCAATACCGAAAACATTAAAGGTTTTGTTTAAAAAAAAAGAGTGATATC
GTTTGCTTACTCATCATTTTTAATTAACAAGCTTTTTGATATTGAATCAA
CACGGATGCGGGGCAAGATCGGTCAGAAAGAGGAAAAGATAAACAATTTT
TTGTTTATTCAGCACAATATAACAATAGGCAGACACTGTCCCGATATGAA
ACATGTGTTTGATATGAAACGGGAGCACTCTAGCAATTTTCTTTCGTTCT
TCTAGGGAATACATCAACCAGTTCAGCATGTTTCTACAAAAATTCAAAGA
CCATCCGAACTTTTTAAATCTTTCAAACGAACTACATATAGACACTTCAG
TATTTGAAGCTGTGAAAAATTTACAATGTGAAGTTGAAATGGCTGGTAAT
CGACTTGACATGACTTTTAAACAAGTTGAACGCACACTAATGATAGCTCA
ATTGGAAATTCCTAATAATCAACAACAACTACAACAGCAACCACAACAAC
AACAGACTGCAAATCCTCAACAGCAACACCAACATCNTTACAACAGCAAC
CACAACAGACTGCAAATCCTCAACAGCAACACCAACATCAACAACAAGCT
CATCCTCAACATCACACACAACAAAATCCTCAACAACATCCACAACACTT
TACTTCTTAAAGAAATATCAACATTTGTATCAGCATCTTTTAAAAATAAT
TATTGATAATAAATGAATCCTCAGAAATATCAGTTTTGGCAACAAGTCAT
TCCTCAACACCACATCAACAGCATTTACAACATGCTTCTTAAAAGAATAT
CAACATTAACATCAGCACCCTTCAGAAATAATTATTGATAATCAACAAAC
AGCAGAATGAAAATCCTCACACCAGCATTGACTAGTCATCCATCTCAACA
AAACACTCAACAATCTCCTCAACAAAACACTCAACAATCTCCTCAAGAAC
ACCCAAACATTATGTCTATTAGCCACCATGCAATGATAATCAACTTCATA
CCGTATTAGCAACAAAAAACCTTGCAATCACCAACAAACTTCTCCACAAC
ATCCACATATTATTGTGATATATCAACATCATCAATGAGAGACCAGGAAT
AGACTGTCGATTGTCATTAACATATGATCTGGTTTGGAGAACTGATTATC
GCAACAACAGAAGTCTGATATATCCTCCATCCGAGTCTTAAGTATTATCC
ATCTATTGGCACCTATCAAACCATTATGTTCACGATCACTATAAGTTCTA
GGATATCAGGATTTTGATGCAAGATAAAATTCGAAGAGTATTTCAAATAG
AAGCTTTTAAGCATATACTTGTTGTTTTTATTCGTTTCTCCAAATTGACA
ATTTTTAAGATAATTTTTTTTTACCAGCACTTTATTTACCATATAAATTA
TTATAACAATTATAATAAGATATTTTTAATTCGAATATTTTTTGTCCTGT
TTGTAAGCCTTTTTGCATATAAAGGAAGTTCTTTATGAATTGGGTACCTC
ATATTCCTTAAAATATTGAAAGC

Coding sequence (CDS) from alignment at scaffold_385:270072..279044-

>TCONS_00063279 ID=TCONS_00063279|Name=TCONS_00063279|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_385:270072..279044- (Clytia hemisphaerica)
ATCAACAACAAGCTCATCCTCAACATCACACACAACAAAATCCTCAACAA
CATCCACAACACTTTACTTCTTAAGGAATACATCAACCAGTTCAGCATGT
TTCTACAAAAATTCAAAGACCATCCGAACTTTTTAAATCTTTCAAACGAA
CTACATATAGACACTTCAGTATTTGAAGCTGTGAAAAATTTACAATGTGA
AGTTGAAATGGCTGGTAATCGACTTGACATGACTTTTAAACAAGTTGAAC
GCACACTAATGATAGCTCAATTGGAAATTCCTAATAATCAACAACAACTA
CAACAGCAACCACAACAACAACAGACTGCAAATCCTCAACAGCAACACCA
ACGCGCTGGCATACTGTAAGAACTATCAAACTCAATTATATCAAGAACAA
CAATACCGTCAAGAGTTTGGTAATTATCTTGAAGCAGAAGCACAAAGAAT
GAAACAAATCTTCTTTTATTCAAATAACATTGGAAAGAATTGTAAAGAAG
CAAGCGCACAACTTCGAAAAATGAAATCGATCAGGTGCAAGTGGACCAAT
ATCAAGTTCGTATAAGAGATCTAACAATGCATTTACAGCAGTAAATTCGG
ACCACGTAAAAAGATGTTGTTAGCAATACGTGAATGCAAGGAACGAATGG
CTGTTCACGACCCTAACATGTATTTACCGAAGCTGGAAGGTGAAGGGTTG
GATGTAGCGACATTCTTGGAACTATGTGATAATGATTTGAAAGAATTGGG
AATTGAATCAACAACAAGCTCATCCTCAACATCACACACAACAAAATCCT
CAACAACATCCACAACACTTTACTTCTTAAGGAATACATCAACCAGTTCA
GCATGTTTCTACAAAAATTCAAAGACCATCCGAACTTTTTAAATCTTTCA
AACGAACTACATATAGACACTTCAGTATTTGAAGCTGTGAAAAATTTACA
ATGTGAAGTTGAAATGGCTGGTAATCGACTTGACATGACTTTTAAACAAG
TTGAACGCACACTAATGATAGCTCAATTGGAAATTCCTAATAATCAACAA
CAACTACAACAGCAACCACAACAACAACAGACTGCAAATCCTCAACAGCA
ACACCAACGCGCTGGCATACTGTAAGAACTATCAAACTCAATTATATCAA
GAACAACAATACCGTCAAGAGTTTGGTAATTATCTTGAAGCAGAAGCACA
AAGAATGAAACAAATCTTCTTTTATTCAAATAACATTGGAAAGAATTGTA
AAGAAGCAAGCGCACAACTTCGAAAAATGAAATCGATCAGGTGCAAGTGG
ACCAATATCAAGTTCGTATAAGAGATCTAACAATGCATTTACAGCAGTAA
ATTCGGACCACGTAAAAAGATGTTGTTAGCAATACGTGAATGCAAGGAAC
GAATGGCTGTTCACGACCCTAACATGTATTTACCGAAGCTGGAAGGTGAA
GGGTTGGATGTAGCGACATTCTTGGAACTATGTGATAATGATTTGAAAGA
ATTGGGAATTGAATCAACAACAAGCTCATCCTCAACATCACACACAACAA
AATCCTCAACAACATCCACAACACTTTACTTCTTAAGGAATACATCAACC
AGTTCAGCATGTTTCTACAAAAATTCAAAGACCATCCGAACTTTTTAAAT
CTTTCAAACGAACTACATATAGACACTTCAGTATTTGAAGCTGTGAAAAA
TTTACAATGTGAAGTTGAAATGGCTGGTAATCGACTTGACATGACTTTTA
AACAAGTTGAACGCACACTAATGATAGCTCAATTGGAAATTCCTAATAAT
CAACAACAACTACAACAGCAACCACAACAACAACAGACTGCAAATCCTCA
ACAGCAACACCAACGCGCTGGCATACTGTAAGAACTATCAAACTCAATTA
TATCAAGAACAACAATACCGTCAAGAGTTTGGTAATTATCTTGAAGCAGA
AGCACAAAGAATGAAACAAATCTTCTTTTATTCAAATAACATTGGAAAGA
ATTGTAAAGAAGCAAGCGCACAACTTCGAAAAATGAAATCGATCAGGTGC
AAGTGGACCAATATCAAGTTCGTATAAGAGATCTAACAATGCATTTACAG
CAGTAAATTCGGACCACGTAAAAAGATGTTGTTAGCAATACGTGAATGCA
AGGAACGAATGGCTGTTCACGACCCTAACATGTATTTACCGAAGCTGGAA
GGTGAAGGGTTGGATGTAGCGACATTCTTGGAACTATGTGATAATGATTT
GAAAGAATTGGGAATTGAATCAACAACAAGCTCATCCTCAACATCACACA
CAACAAAATCCTCAACAACATCCACAACACTTTACTTCTTAAGGAATACA
TCAACCAGTTCAGCATGTTTCTACAAAAATTCAAAGACCATCCGAACTTT
TTAAATCTTTCAAACGAACTACATATAGACACTTCAGTATTTGAAGCTGT
GAAAAATTTACAATGTGAAGTTGAAATGGCTGGTAATCGACTTGACATGA
CTTTTAAACAAGTTGAACGCACACTAATGATAGCTCAATTGGAAATTCCT
AATAATCAACAACAACTACAACAGCAACCACAACAACAACAGACTGCAAA
TCCTCAACAGCAACACCAACGCGCTGGCATACTGTAAGAACTATCAAACT
CAATTATATCAAGAACAACAATACCGTCAAGAGTTTGGTAATTATCTTGA
AGCAGAAGCACAAAGAATGAAACAAATCTTCTTTTATTCAAATAACATTG
GAAAGAATTGTAAAGAAGCAAGCGCACAACTTCGAAAAATGAAATCGATC
AGGTGCAAGTGGACCAATATCAAGTTCGTATAAGAGATCTAACAATGCAT
TTACAGCAGTAAATTCGGACCACGTAAAAAGATGTTGTTAGCAATACGTG
AATGCAAGGAACGAATGGCTGTTCACGACCCTAACATGTATTTACCGAAG
CTGGAAGGTGAAGGGTTGGATGTAGCGACATTCTTGGAACTATGTGATAA
TGATTTGAAAGAATTGGGAATTGAATCAACAACAAGCTCATCCTCAACAT
CACACACAACAAAATCCTCAACAACATCCACAACACTTTACTTCTTAAGG
AATACATCAACCAGTTCAGCATGTTTCTACAAAAATTCAAAGACCATCCG
AACTTTTTAAATCTTTCAAACGAACTACATATAGACACTTCAGTATTTGA
AGCTGTGAAAAATTTACAATGTGAAGTTGAAATGGCTGGTAATCGACTTG
ACATGACTTTTAAACAAGTTGAACGCACACTAATGATAGCTCAATTGGAA
ATTCCTAATAATCAACAACAACTACAACAGCAACCACAACAACAACAGAC
TGCAAATCCTCAACAGCAACACCAACGCGCTGGCATACTGTAAGAACTAT
CAAACTCAATTATATCAAGAACAACAATACCGTCAAGAGTTTGGTAATTA
TCTTGAAGCAGAAGCACAAAGAATGAAACAAATCTTCTTTTATTCAAATA
ACATTGGAAAGAATTGTAAAGAAGCAAGCGCACAACTTCGAAAAATGAAA
TCGATCAGGTGCAAGTGGACCAATATCAAGTTCGTATAAGAGATCTAACA
ATGCATTTACAGCAGTAAATTCGGACCACGTAAAAAGATGTTGTTAGCAA
TACGTGAATGCAAGGAACGAATGGCTGTTCACGACCCTAACATGTATTTA
CCGAAGCTGGAAGGTGAAGGGTTGGATGTAGCGACATTCTTGGAACTATG
TGATAATGATTTGAAAGAATTGGGAATTGAATCAACAACAAGCTCATCCT
CAACATCACACACAACAAAATCCTCAACAACATCCACAACACTTTACTTC
TTAAGGAATACATCAACCAGTTCAGCATGTTTCTACAAAAATTCAAAGAC
CATCCGAACTTTTTAAATCTTTCAAACGAACTACATATAGACACTTCAGT
ATTTGAAGCTGTGAAAAATTTACAATGTGAAGTTGAAATGGCTGGTAATC
GACTTGACATGACTTTTAAACAAGTTGAACGCACACTAATGATAGCTCAA
TTGGAAATTCCTAATAATCAACAACAACTACAACAGCAACCACAACAACA
ACAGACTGCAAATCCTCAACAGCAACACCAACGCGCTGGCATACTGTAAG
AACTATCAAACTCAATTATATCAAGAACAACAATACCGTCAAGAGTTTGG
TAATTATCTTGAAGCAGAAGCACAAAGAATGAAACAAATCTTCTTTTATT
CAAATAACATTGGAAAGAATTGTAAAGAAGCAAGCGCACAACTTCGAAAA
ATGAAATCGATCAGGTGCAAGTGGACCAATATCAAGTTCGTATAAGAGAT
CTAACAATGCATTTACAGCAGTAAATTCGGACCACGTAAAAAGATGTTGT
TAGCAATACGTGAATGCAAGGAACGAATGGCTGTTCACGACCCTAACATG
TATTTACCGAAGCTGGAAGGTGAAGGGTTGGATGTAGCGACATTCTTGGA
ACTATGTGATAATGATTTGAAAGAATTGGGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039656XLOC_039656Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063279-proteinTCONS_00063279-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063279-exon-scaffold_385-1575043694:278737..279044TCONS_00063279-exon-scaffold_385-1575043694:278737..279044Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1575043694:278220..278295TCONS_00063279-exon-scaffold_385-1575043694:278220..278295Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1575043694:272819..272884TCONS_00063279-exon-scaffold_385-1575043694:272819..272884Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1575043694:272044..272216TCONS_00063279-exon-scaffold_385-1575043694:272044..272216Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1575043694:271062..271339TCONS_00063279-exon-scaffold_385-1575043694:271062..271339Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1575043694:270072..271008TCONS_00063279-exon-scaffold_385-1575043694:270072..271008Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1510915933:278737..279044TCONS_00063279-exon-scaffold_385-1510915933:278737..279044Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1510915933:278220..278295TCONS_00063279-exon-scaffold_385-1510915933:278220..278295Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1510915933:272819..272884TCONS_00063279-exon-scaffold_385-1510915933:272819..272884Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1510915933:272044..272216TCONS_00063279-exon-scaffold_385-1510915933:272044..272216Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1510915933:271062..271339TCONS_00063279-exon-scaffold_385-1510915933:271062..271339Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1510915933:270072..271008TCONS_00063279-exon-scaffold_385-1510915933:270072..271008Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1491911889:278737..279044TCONS_00063279-exon-scaffold_385-1491911889:278737..279044Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1491911889:278220..278295TCONS_00063279-exon-scaffold_385-1491911889:278220..278295Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1491911889:272819..272884TCONS_00063279-exon-scaffold_385-1491911889:272819..272884Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1491911889:272044..272216TCONS_00063279-exon-scaffold_385-1491911889:272044..272216Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1491911889:271062..271339TCONS_00063279-exon-scaffold_385-1491911889:271062..271339Clytia hemisphaericaexon
TCONS_00063279-exon-scaffold_385-1491911889:270072..271008TCONS_00063279-exon-scaffold_385-1491911889:270072..271008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:270072..279044 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.24026	4.17753	3.30432	3.00301	21.4627	16.7592	25.1483	26.7958	15.5938	22.272	13.6993	10.091	15.7682	12.9339	16.3358	18.4054	11.9766	10.6479	10.4697	17.3655	6.65985	6.27163	8.80852	10.6649	6.43822	10.334	12.3617	8.23959	16.2858	15.704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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