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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063278 ID=TCONS_00063278|Name=TCONS_00063278|organism=Clytia hemisphaerica|type=transcript|length=977bp
ATTTATTTGACGGACGTTGGCACTGGCCGATTTAAGACAATAAATCAACC
ATCGTTTTTCACGTGCAAGTGGTTTTATCACACTCCAATCTTGATAAAAA
TGTTTGGATGGGACGTATTTCAGATTCAAGAAAACTTTGTCAAGTTTTAA
TACCTGGTACACACAATTCTGGTGCTTATGGCATTTTGTTTGGTCTTGGA
CAAACTCAGGATTGGAGTATTAAAGAGCAACTTGAAAATGGAGTAAGGTT
TTTAGATATTCGTTTGGCTCGGAACTTATCACCAAACGATTTTGAAGTCG
TTCACGGATTCATCAAATTGGGAAgttttaagaaatttattttgtctCCA
GTCACTAAATTTTTGACAGACAACCCTTCTGAGGTTATTTTAATGAGAAT
TAAAACTTACGGATTTGACTTTGGTGCAGAAGCTCGTTTGGAACGTGATT
TCATGATGAATTTGGAATATAGATTTTATCAGAAAATTGTGAATTCAAAT
ACATCAATCAGTCAGgtTCGTGGCAAGATTGTGCTATTGAAAAAACACCA
CAAAGCATTCAAAAAGAAGATTGGGCTCGAATGGCCGTTAAATAACAACG
TACAGGATAAATACCAAATAGAAGTCAAGAGCTATGATCTACAAATGTTA
GGAACAACTTACCGAATATCTTGTCCATTCATATTTGGAATTGACATTAA
GAAGAAATCGGATGCaatattaaaacattttaatcaATCTGCTCGACACT
ATGGGTCAggtttttatatcaattttgcCAGTGGCAGCTATTATGGGTTG
TTTATATGGAGAATCGCATCAGTGACAAACAAAGTTGTATTagattattt
caaaacaaactcaCATAGAAATATAGGTAGTATTGTGGTTATAGATTATC
CAAATCGAATACCAGGGTTGGTTGAAACACTTAttgagtataatttttat
tcaaattttaatgcaAATGACAAGATT Run BLAST on NCBI protein sequence of TCONS_00063278-protein >TCONS_00063278-protein ID=TCONS_00063278-protein|Name=TCONS_00063278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MGRISDSRKLCQVLIPGTHNSGAYGILFGLGQTQDWSIKEQLENGVRFLD
IRLARNLSPNDFEVVHGFIKLGSFKKFILSPVTKFLTDNPSEVILMRIKT
YGFDFGAEARLERDFMMNLEYRFYQKIVNSNTSISQVRGKIVLLKKHHKA
FKKKIGLEWPLNNNVQDKYQIEVKSYDLQMLGTTYRISCPFIFGIDIKKK
SDAILKHFNQSARHYGSGFYINFASGSYYGLFIWRIASVTNKVVLDYFKT
NSHRNIGSIVVIDYPNRIPGLVETLIEYNFYSNFNANDKI Run BLAST on NCBI transcript from alignment at scaffold_385:266058..268070- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063278 ID=TCONS_00063278|Name=TCONS_00063278|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at scaffold_385:266058..268070- (Clytia hemisphaerica)
ATTTATTTGACGGACGTTGGCACTGGCCGATTTAAGACAATAAATCAAGT
ACGTCACGTTTGTTTGACAAGTACCTTATCGGGGAAAACTTCGTCGGGAA
AAATTCTCGTCGGGGAAAATTTTTGTCGGGGAAAAATATTCCTCACTTGC
TGGTAGTTGGTAAACGCATTAAGGCCGGGGAAAATATTCGTCGAGAAAAA
TATTCGTCATTTGGCCAAAATTTCGTCACTTTCCCCCGACGAAGTTTTCC
CCGATAAGGTACGTCGGAAACATGCGAAGGAGTGCAATGCTCGTTAAAAG
ACAATGAAATTACAATTATAAATCTCTTCATCTGATAAGTTCGACGTGGT
CTAAAACCGCCTATGATTGGTCCAATTTATTATTGTGCTAATTTTGGTAT
TTTTAGAAAACCTATCAAATCTGAAAAGAGTTTTTGACTTTTTGAACATA
TTGGTTTCTTTATTAATTGCAAAAGATGAGACTTGCTACAATAAATTTTT
TAGCCATCGTTTTTCACGTGCAAGTGGTTTTATCACACTCCAATCTTGAT
AAAAATGTTTGGATGGGACGTATTTCAGATTCAAGAAAACTTTGTCAAGT
TTTAATACCTGGTACACACAATTCTGGTGCTTATGGCATTTTGTTTGGTC
TTGGACAAACTCAGGATTGGAGTATTAAAGAGCAACTTGAAAATGGAGTA
AGGTTTTTAGATATTCGTTTGGCTCGGAACTTATCACCAAACGATTTTGA
AGTCGTTCACGGATTCATCAAATTGGGAAGTTTTAAGAAATTTATTTTGT
CTCCAGTCACTAAATTTTTGACAGACAACCCTTCTGAGGTTATTTTAATG
AGAATTAAAACTTACGGATTTGACTTTGGTGCAGAAGCTCGTTTGGAACG
TGATTTCATGATGAATTTGGAATATAGATTTTATCAGAAAATTGTGAATT
CAAATACATCAATCAGTCAGGTACGTTGAAACACCCCCTGTCTCAGTGAC
CCGTTCAGTGCGGTTTAGTTAGTGGAAATAAAAGAAAGGGGCTAAACCCT
GATAGAGGCCCCCAAGCGGTTTTCGTGATGACGTGATAGAAACTTTTTTG
CAGCGTGATTACGTGATTTGAAATTTTTTCTTTGTGATTGCGTCAAAACA
TGATTGTGATTTGAAAGATTTTTGATACGTGATCTTCCATTTTTTTTGTT
GATTTGCGTGCGATCGTGATTAAAGACAAAAAATTGCGTGATTCCTGATA
AGAATAAGAATCACCCTTACGTTACTTATATGTATGTTACAGCTTCAGAA
ATCCATTTAAGTGGTTCTGAGTTTTTATAGTGTTCCTCCCAAATGATTCC
AACTCTGGAAAATTTTCCAGTAAATCAGTAAATGGAAATTTTGGTTGCCA
AATTAGTGGAATGCCAAATTTTATGGCGTTAAAATCTAATTTTGTGATGA
TTGAGAGTAAATTTATAGACTGCCAAAGATTTATAGTGTATGAGCTTTGG
GGAGAAACTCAAATAACAATTTTTAGCGTTTTTTTATTAAATTTTTTTCA
GGTTCGTGGCAAGATTGTGCTATTGAAAAAACACCACAAAGCATTCAAAA
AGAAGATTGGGCTCGAATGGCCGTTAAATAACAACGTACAGGATAAATAC
CAAATAGAAGTCAAGAGCTATGATCTACAAATGTTAGGAACAACTTACCG
AATATCTTGTCCATTCATATTTGGAATTGACATTAAGAAGAAATCGGATG
CAATATTAAAACATTTTAATCAATCTGCTCGACACTATGGGTCAGGTTTT
TATATCAATTTTGCCAGTGGCAGCTATTATGGGTTGTTTATATGGAGAAT
CGCATCAGTGACAAACAAAGTTGTATTAGATTATTTCAAAACAAACTCAC
ATAGAAATATAGGTAGTATTGTGGTTATAGATTATCCAAATCGAATACCA
GGGTTGGTTGAAACACTTATTGAGTATAATTTTTATTCAAATTTTAATGC
AAATGACAAGATT Coding sequence (CDS) from alignment at scaffold_385:266058..268070- >TCONS_00063278 ID=TCONS_00063278|Name=TCONS_00063278|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at scaffold_385:266058..268070- (Clytia hemisphaerica)
GTTCGTGGCAAGATTGTGCTATTGAAAAAACACCACAAAGCATTCAAAAA
GAAGATTGGGCTCGAATGGCCGTTAAATAACAACGTACAGGATAAATACC
AAATAGAAGTCAAGAGCTATGATCTACAAATGTTAGGAACAACTTACCGA
ATATCTTGTCCATTCATATTTGGAATTGACATTAAGAAGAAATCGGATGC
AATATTAAAACATTTTAATCAATCTGCTCGACACTATGGGTCAGGTTTTT
ATATCAATTTTGCCAGTGGCAGCTATTATGGGTTGTTTATATGGAGAATC
GCATCAGTGACAAACAAAGTTGTATTAGATTATTTCAAAACAAACTCACA
TAGAAATATAGGTAGTATTGTGGTTATAGATTATCCAAATCGAATACCAG
GGTTGGTTGAAACACTTATTGAGTATAATTTTTATTCAAATTTTAATGCA
AATGACAAGATTATGGGACGTATTTCAGATTCAAGAAAACTTTGTCAAGT
TTTAATACCTGGTACACACAATTCTGGTGCTTATGGCATTTTGTTTGGTC
TTGGACAAACTCAGGATTGGAGTATTAAAGAGCAACTTGAAAATGGAGTA
AGGTTTTTAGATATTCGTTTGGCTCGGAACTTATCACCAAACGATTTTGA
AGTCGTTCACGGATTCATCAAATTGGGAAGTTTTAAGAAATTTATTTTGT
CTCCAGTCACTAAATTTTTGACAGACAACCCTTCTGAGGTTATTTTAATG
AGAATTAAAACTTACGGATTTGACTTTGGTGCAGAAGCTCGTTTGGAACG
TGATTTCATGATGAATTTGGAATATAGATTTTATCAGAAAATTGTGAATT
CAAATACATCAATCAGTCAGGTTCGTGGCAAGATTGTGCTATTGAAAAAA
CACCACAAAGCATTCAAAAAGAAGATTGGGCTCGAATGGCCGTTAAATAA
CAACGTACAGGATAAATACCAAATAGAAGTCAAGAGCTATGATCTACAAA
TGTTAGGAACAACTTACCGAATATCTTGTCCATTCATATTTGGAATTGAC
ATTAAGAAGAAATCGGATGCAATATTAAAACATTTTAATCAATCTGCTCG
ACACTATGGGTCAGGTTTTTATATCAATTTTGCCAGTGGCAGCTATTATG
GGTTGTTTATATGGAGAATCGCATCAGTGACAAACAAAGTTGTATTAGAT
TATTTCAAAACAAACTCACATAGAAATATAGGTAGTATTGTGGTTATAGA
TTATCCAAATCGAATACCAGGGTTGGTTGAAACACTTATTGAGTATAATT
TTTATTCAAATTTTAATGCAAATGACAAGATTATGGGACGTATTTCAGAT
TCAAGAAAACTTTGTCAAGTTTTAATACCTGGTACACACAATTCTGGTGC
TTATGGCATTTTGTTTGGTCTTGGACAAACTCAGGATTGGAGTATTAAAG
AGCAACTTGAAAATGGAGTAAGGTTTTTAGATATTCGTTTGGCTCGGAAC
TTATCACCAAACGATTTTGAAGTCGTTCACGGATTCATCAAATTGGGAAG
TTTTAAGAAATTTATTTTGTCTCCAGTCACTAAATTTTTGACAGACAACC
CTTCTGAGGTTATTTTAATGAGAATTAAAACTTACGGATTTGACTTTGGT
GCAGAAGCTCGTTTGGAACGTGATTTCATGATGAATTTGGAATATAGATT
TTATCAGAAAATTGTGAATTCAAATACATCAATCAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063278-exon-scaffold_385-1575043694:268023..268070 | TCONS_00063278-exon-scaffold_385-1575043694:268023..268070 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1575043694:267101..267567 | TCONS_00063278-exon-scaffold_385-1575043694:267101..267567 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1575043694:266058..266519 | TCONS_00063278-exon-scaffold_385-1575043694:266058..266519 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1510915933:268023..268070 | TCONS_00063278-exon-scaffold_385-1510915933:268023..268070 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1510915933:267101..267567 | TCONS_00063278-exon-scaffold_385-1510915933:267101..267567 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1510915933:266058..266519 | TCONS_00063278-exon-scaffold_385-1510915933:266058..266519 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1491911889:268023..268070 | TCONS_00063278-exon-scaffold_385-1491911889:268023..268070 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1491911889:267101..267567 | TCONS_00063278-exon-scaffold_385-1491911889:267101..267567 | Clytia hemisphaerica | exon |
| TCONS_00063278-exon-scaffold_385-1491911889:266058..266519 | TCONS_00063278-exon-scaffold_385-1491911889:266058..266519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:266058..268070 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000909 | PLipase_C_PInositol-sp_X_dom |
| IPR017946 | PLC-like_Pdiesterase_TIM-brl |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008081 | phosphoric diester hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| molecular_function |
GO:0008081 |
phosphoric diester hydrolase activity |
Blast
The following BLAST results are available for this feature:
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