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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063277 ID=TCONS_00063277|Name=TCONS_00063277|organism=Clytia hemisphaerica|type=transcript|length=1174bp
gtacgtcggaaacatgcgaaggagtgcaatgctcgttaaaagacaatgaa
attacaattataaATCTCTtcatctgataagttcgacgtggtctaaaacc
gcctatgatTGGTCCAATTTATTATTGTgctaattttggtatttttagaa
aaCCTATCAAATCTGAAaagagtttttgactttttgaacaTATTGGTTTC
TTTATTAATTGCAAAAGATGAGACTTGCTACAATAAATTTTTTAGCCATC
GTTTTTCACGTGCAAGTGGTTTTATCACACTCCAATCTTGATAAAAATGT
TTGGATGGGACGTATTTCAGATTCAAGAAAACTTTGTCAAGTTTTAATAC
CTGGTACACACAATTCTGGTGCTTATGGCATTTTGTTTGGTCTTGGACAA
ACTCAGGATTGGAGTATTAAAGAGCAACTTGAAAATGGAGTAAGGTTTTT
AGATATTCGTTTGGCTCGGAACTTATCACCAAACGATTTTGAAGTCGTTC
ACGGATTCATCAAATTGGGAAgttttaagaaatttattttgtctCCAGTC
ACTAAATTTTTGACAGACAACCCTTCTGAGGTTATTTTAATGAGAATTAA
AACTTACGGATTTGACTTTGGTGCAGAAGCTCGTTTGGAACGTGATTTCA
TGATGAATTTGGAATATAGATTTTATCAGAAAATTGTGAATTCAAATACA
TCAATCAGTCAGgtTCGTGGCAAGATTGTGCTATTGAAAAAACACCACAA
AGCATTCAAAAAGAAGATTGGGCTCGAATGGCCGTTAAATAACAACGTAC
AGGATAAATACCAAATAGAAGTCAAGAGCTATGATCTACAAATGTTAGGA
ACAACTTACCGAATATCTTGTCCATTCATATTTGGAATTGACATTAAGAA
GAAATCGGATGCaatattaaaacattttaatcaATCTGCTCGACACTATG
GGTCAggtttttatatcaattttgcCAGTGGCAGCTATTATGGGTTGTTT
ATATGGAGAATCGCATCAGTGACAAACAAAGTTGTATTagattatttcaa
aacaaactcaCATAGAAATATAGGTAGTATTGTGGTTATAGATTATCCAA
ATCGAATACCAGGGTTGGTTGAAACACTTAttgagtataatttttattca
aattttaatgcaAATGACAAGATT Run BLAST on NCBI transcript from alignment at scaffold_385:266058..267812- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063277 ID=TCONS_00063277|Name=TCONS_00063277|organism=Clytia hemisphaerica|type=transcript|length=1755bp|location=Sequence derived from alignment at scaffold_385:266058..267812- (Clytia hemisphaerica)
GTACGTCGGAAACATGCGAAGGAGTGCAATGCTCGTTAAAAGACAATGAA
ATTACAATTATAAATCTCTTCATCTGATAAGTTCGACGTGGTCTAAAACC
GCCTATGATTGGTCCAATTTATTATTGTGCTAATTTTGGTATTTTTAGAA
AACCTATCAAATCTGAAAAGAGTTTTTGACTTTTTGAACATATTGGTTTC
TTTATTAATTGCAAAAGATGAGACTTGCTACAATAAATTTTTTAGCCATC
GTTTTTCACGTGCAAGTGGTTTTATCACACTCCAATCTTGATAAAAATGT
TTGGATGGGACGTATTTCAGATTCAAGAAAACTTTGTCAAGTTTTAATAC
CTGGTACACACAATTCTGGTGCTTATGGCATTTTGTTTGGTCTTGGACAA
ACTCAGGATTGGAGTATTAAAGAGCAACTTGAAAATGGAGTAAGGTTTTT
AGATATTCGTTTGGCTCGGAACTTATCACCAAACGATTTTGAAGTCGTTC
ACGGATTCATCAAATTGGGAAGTTTTAAGAAATTTATTTTGTCTCCAGTC
ACTAAATTTTTGACAGACAACCCTTCTGAGGTTATTTTAATGAGAATTAA
AACTTACGGATTTGACTTTGGTGCAGAAGCTCGTTTGGAACGTGATTTCA
TGATGAATTTGGAATATAGATTTTATCAGAAAATTGTGAATTCAAATACA
TCAATCAGTCAGGTACGTTGAAACACCCCCTGTCTCAGTGACCCGTTCAG
TGCGGTTTAGTTAGTGGAAATAAAAGAAAGGGGCTAAACCCTGATAGAGG
CCCCCAAGCGGTTTTCGTGATGACGTGATAGAAACTTTTTTGCAGCGTGA
TTACGTGATTTGAAATTTTTTCTTTGTGATTGCGTCAAAACATGATTGTG
ATTTGAAAGATTTTTGATACGTGATCTTCCATTTTTTTTGTTGATTTGCG
TGCGATCGTGATTAAAGACAAAAAATTGCGTGATTCCTGATAAGAATAAG
AATCACCCTTACGTTACTTATATGTATGTTACAGCTTCAGAAATCCATTT
AAGTGGTTCTGAGTTTTTATAGTGTTCCTCCCAAATGATTCCAACTCTGG
AAAATTTTCCAGTAAATCAGTAAATGGAAATTTTGGTTGCCAAATTAGTG
GAATGCCAAATTTTATGGCGTTAAAATCTAATTTTGTGATGATTGAGAGT
AAATTTATAGACTGCCAAAGATTTATAGTGTATGAGCTTTGGGGAGAAAC
TCAAATAACAATTTTTAGCGTTTTTTTATTAAATTTTTTTCAGGTTCGTG
GCAAGATTGTGCTATTGAAAAAACACCACAAAGCATTCAAAAAGAAGATT
GGGCTCGAATGGCCGTTAAATAACAACGTACAGGATAAATACCAAATAGA
AGTCAAGAGCTATGATCTACAAATGTTAGGAACAACTTACCGAATATCTT
GTCCATTCATATTTGGAATTGACATTAAGAAGAAATCGGATGCAATATTA
AAACATTTTAATCAATCTGCTCGACACTATGGGTCAGGTTTTTATATCAA
TTTTGCCAGTGGCAGCTATTATGGGTTGTTTATATGGAGAATCGCATCAG
TGACAAACAAAGTTGTATTAGATTATTTCAAAACAAACTCACATAGAAAT
ATAGGTAGTATTGTGGTTATAGATTATCCAAATCGAATACCAGGGTTGGT
TGAAACACTTATTGAGTATAATTTTTATTCAAATTTTAATGCAAATGACA
AGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063277-exon-scaffold_385-1575043694:267101..267812 | TCONS_00063277-exon-scaffold_385-1575043694:267101..267812 | Clytia hemisphaerica | exon |
| TCONS_00063277-exon-scaffold_385-1575043694:266058..266519 | TCONS_00063277-exon-scaffold_385-1575043694:266058..266519 | Clytia hemisphaerica | exon |
| TCONS_00063277-exon-scaffold_385-1510915933:267101..267812 | TCONS_00063277-exon-scaffold_385-1510915933:267101..267812 | Clytia hemisphaerica | exon |
| TCONS_00063277-exon-scaffold_385-1510915933:266058..266519 | TCONS_00063277-exon-scaffold_385-1510915933:266058..266519 | Clytia hemisphaerica | exon |
| TCONS_00063277-exon-scaffold_385-1491911889:267101..267812 | TCONS_00063277-exon-scaffold_385-1491911889:267101..267812 | Clytia hemisphaerica | exon |
| TCONS_00063277-exon-scaffold_385-1491911889:266058..266519 | TCONS_00063277-exon-scaffold_385-1491911889:266058..266519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:266058..267812 - |
Blast
The following BLAST results are available for this feature:
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