TCONS_00063276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063276
Unique NameTCONS_00063276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2190

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063276 ID=TCONS_00063276|Name=TCONS_00063276|organism=Clytia hemisphaerica|type=transcript|length=2190bp
ATTTCATCCAAATACGATGTATAAACAAAACTAAATTCTCctattttgtc
tgttttgacAATTGAAGGGCATGTAAAAACTGTCGTATAAATACTCTGTG
CCCACGTAGTTCtttatgaaaagaaattgaCTGTGGTGATGTAAAGAGAT
TGAGCTGTTATTTTTGCGAATATTTGAGCTTCAGGAAGACCAAAACAACA
AGAATATATTTGAAGTCTTTGTAATAACTTAAAGATGGCATCGAAGGCGt
cgaaaaatattcattcaatcataGAAGGCTTTGAGGTAAAAGAAGCAAAG
CCCGAGGAGAAAAAACCGAAGGAAAAGAAAAGACTAGTTAAACAGAAGAC
ATCAAAGAAAAATcctaaaacatcaaaatcatcagCTCCTAAAAGCAAGA
CATGTTTCCGTTTGCTAAAGCATTTTCTACAAACATCGCGTTTTTCAGCT
TTGCCATTGATTCTTGTACAATTTTCTCTGTTGTACCTTTATTTATACTA
CATGGTTTTAGAATCTGAAATTAACAACTCGCTAAGACAGAAATGGTCTT
TGATTATAAGTGGATCTATTGCATTCATTTCTGGTACATTGAGTCTCTTT
TCTCACCATACCAGATGCATTTTAATGTTGATTCTACCAGGAATGATTAC
TGGAAAAGGACGCGCGTCTTTGTTGAGTATGGCCATTGGTTTTCTTATGG
AAGGTCCTATAAACAATATCAACAATAATATCAATGAAGCAGTCGAGAGT
AGCACATGCATGTATAAATTCATGAAAGATTTGCCGGAATTTCCTTTTGT
TAATGTTCCCAATGTTGATGATATTCAATTGAAGATTCTTACTGCaatta
aagaactttttgaTGATGCTCAGTATTActataaaaatattggaaaTTTC
TTCTTCATTGGTTCGCTTATTATNTCAGTATTACTATAAAAATATTGGGA
ATTTCTTCTTCATTGGTTCGCTTATTATATTGATTTTTGATTCTATCCGA
TATTTAAAGCAATATTATACTGATGACGAATTCGATAACAAGATTGTCGA
TGATAACTTACGCTCTTTATGGCGCGAAAACGGCGATAATTACGACAAGT
TAACACCGTTACGCCGAtgggaaaaaaagttaaaatatcgGAAAAGTTCA
GCTCTCAGACTTACAAGAGAGGAATTACAGAAGACATTTTTGAAAGCATT
AATAGCTTTGGTTGTGATTATGGTTTCAGTTTTTGTTATTCTTGGCGATG
CGACCCTTTACACAAAACTAAACAGTTTAACGACTGGTACAGGAGCCAAT
GCTGATGGCCACGTGGATAAGCCAACAACAAATAGCGGGATTACGGNGCC
CTTTACACGAAACTAAACAGTTTAACGACAAGTACGGGAGCCAATGCTGA
TGGCCACGTGGATAAGCCAACAACAAATAGCGGGATTACAGATTGGCTTA
AACCAAAACTCAAAGACgttaaatcaaaagttaagaaaacaatatcaaaa
tataaGAACCAAGATTTATTGATGAAAAGTTGTCCATTGAAGCCTTTCCA
AAGTAGTAAACTGGCGATAACAACTATTTCAATACTCTTGGGAATTATTT
TATTATCGTGTATCTTTGATGCATATGGTATGCGATTACGATCACGAATC
TGTAACCTGTTTTATCCTGATCGTGCACACGATCCGTGCGATTTATCTCC
ATGACCAAATCACTCGTGGTAGAAATACAAGAAGGATTCAACTGAATGCC
ATTATACTTCATAAATGCAGAAAACGCAAACTGACTTTAAAATTCTCCTG
GTTCTATCGTTTCCTTAATTTTTTCCGGAAATTGAAAGTTGGGAAGCCAA
GATGTTTTGAATGTTTACGTATTATATTATTAAGCGATAATTTGGTTAAT
GTTGGCATGAGAGATAATGATGGAAGCGATTTGCAGTGTAAGATGTGCAA
ACATTGTCATAAAGATTTTAAATAATTCATAAAAAGCACAAGAGCTTTGC
ATCTTGGGATAGTactatatttttcatttatatgttaattttttataaga
acatccataatttttgaattttttttgatgtttttaatttttgagtttta
agtttaaaatttcttaatatgttcttattttaatcattttgtaagtattt
ttgtccatttttctaagaattcTGGTGTTCTAGAGTCTGC
Run BLAST on NCBI

protein sequence of TCONS_00063276-protein

>TCONS_00063276-protein ID=TCONS_00063276-protein|Name=TCONS_00063276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MASKASKNIHSIIEGFEVKEAKPEEKKPKEKKRLVKQKTSKKNPKTSKSS
APKSKTCFRLLKHFLQTSRFSALPLILVQFSLLYLYLYYMVLESEINNSL
RQKWSLIISGSIAFISGTLSLFSHHTRCILMLILPGMITGKGRASLLSMA
IGFLMEGPINNINNNINEAVESSTCMYKFMKDLPEFPFVNVPNVDDIQLK
ILTAIKELFDDAQYYYKNIGNFFFIGSLIXSVLL
Run BLAST on NCBI

transcript from alignment at scaffold_385:258955..261216-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063276 ID=TCONS_00063276|Name=TCONS_00063276|organism=Clytia hemisphaerica|type=transcript|length=2262bp|location=Sequence derived from alignment at scaffold_385:258955..261216- (Clytia hemisphaerica)
ATTTCATCCAAATACGATGTATAAACAAAACTAAATTCTCCTATTTTGTC
TGTTTTGACAATTGAAGGGCATGTAAAAACTGTCGTATAAATACTCTGTG
CCCACGTAGTTCTTTATGAAAAGAAATTGACTGTGGTGATGTAAAGAGAT
TGAGCTGTTATTTTTGCGAATATTTGAGCTTCAGGAAGACCAAAACAACA
AGAATATATTTGAAGTCTTTGTAATAACTTAAAGATGGCATCGAAGGCGT
CGAAAAATATTCATTCAATCATAGAAGGCTTTGAGGTAAAAGAAGCAAAG
CCCGAGGAGAAAAAACCGAAGGAAAAGAAAAGACTAGTTAAACAGAAGAC
ATCAAAGAAAAATCCTAAAACATCAAAATCATCAGCTCCTAAAAGCAAGA
CATGTTTCCGTTTGCTAAAGCATTTTCTACAAACATCGAGTTTTTCAGCT
TTGCCATTGGTTCTTGTNAAGACATGTTTCCATTTGCTAAAGCACTTTCT
ACAAACATCGCGTTTTTCAGCTTTGCCATTGATTCTTGTACAATTTTCTC
TGTTGTACCTTTATTTATACTACATGGTTTTAGAATCTGAAATTAACAAC
TCGCTAAGACAGAAATGGTCTTTGATTATAAGTGGATCTATTGCATTCAT
TTCTGGTACATTGAGTCTCTTTTCTCACCATACCAGATGCATTTTAATGT
TGATTCTACCAGGAATGATTACTGGAAAAGGACGCGCGTCTTTGTTGAGT
ATGGCCATTGGTTTTCTTATGGAAGGTCCTATAAACAATATCAACAATAA
TATCAATGAAGCAGTCGAGAGTAGCACATGCATGTATAAATTCATGAAAG
ATTTGCCGGAATTTCCTTTTGTTAATGTTCCCAATGTTGATGATATTCAA
TTGAAGATTCTTACTGCAATTAAAGAACTTTTTGATGATGCTCAGTATTA
CTATAAAAATATTGGAAATTTCTTCTTCATTGGTTCGCTTATTATNTCAG
TATTACTATAAAAATATTGGGAATTTCTTCTTCATTGGTTCGCTTATTAT
ATTGATTTTTGATTCTATCCGATATTTAAAGCAATATTATACTGATGACG
AATTCGATAACAAGATTGTCGATGATAACTTACGCTCTTTATGGCGCGAA
AACGGCGATAATTACGACAAGTTAACACCGTTACGCCGATGGGAAAAAAA
GTTAAAATATCGGAAAAGTTCAGCTCTCAGACTTACAAGAGAGGAATTAC
AGAAGACATTTTTGAAAGCATTAATAGCTTTGGTTGTGATTATGGTTTCA
GTTTTTGTTATTCTTGGCGATGCGACCCTTTACACAAAACTAAACAGTTT
AACGACTGGTACAGGAGCCAATGCTGATGGCCACGTGGATAAGCCAACAA
CAAATAGCGGGATTACGGNGCCCTTTACACGAAACTAAACAGTTTAACGA
CAAGTACGGGAGCCAATGCTGATGGCCACGTGGATAAGCCAACAACAAAT
AGCGGGATTACAGATTGGCTTAAACCAAAACTCAAAGACGTTAAATCAAA
AGTTAAGAAAACAATATCAAAATATAAGAACCAAGATTTATTGATGAAAA
GTTGTCCATTGAAGCCTTTCCAAAGTAGTAAACTGGCGATAACAACTATT
TCAATACTCTTGGGAATTATTTTATTATCGTGTATCTTTGATGCATATGG
TATGCGATTACGATCACGAATCTGTAACCTGTTTTATCCTGATCGTGCAC
ACGATCCGTGCGATTTATCTCCATGACCAAATCACTCGTGGTAGAAATAC
AAGAAGGATTCAACTGAATGCCATTATACTTCATAAATGCAGAAAACGCA
AACTGACTTTAAAATTCTCCTGGTTCTATCGTTTCCTTAATTTTTTCCGG
AAATTGAAAGTTGGGAAGCCAAGATGTTTTGAATGTTTACGTATTATATT
ATTAAGCGATAATTTGGTTAATGTTGGCATGAGAGATAATGATGGAAGCG
ATTTGCAGTGTAAGATGTGCAAACATTGTCATAAAGATTTTAAATAATTC
ATAAAAAGCACAAGAGCTTTGCATCTTGGGATAGTACTATATTTTTCATT
TATATGTTAATTTTTTATAAGAACATCCATAATTTTTGAATTTTTTTTGA
TGTTTTTAATTTTTGAGTTTTAAGTTTAAAATTTCTTAATATGTTCTTAT
TTTAATCATTTTGTAAGTATTTTTGTCCATTTTTCTAAGAATTCTGGTGT
TCTAGAGTCTGC

Coding sequence (CDS) from alignment at scaffold_385:258955..261216-

>TCONS_00063276 ID=TCONS_00063276|Name=TCONS_00063276|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_385:258955..261216- (Clytia hemisphaerica)
ATCGCGTTTTTCAGCTTTGCCATTGATTCTTGTACAATTTTCTCTGTTGT
ACCTTTATTTATACTACATGGTTTTAGAATCTGAAATTAACAACTCGCTA
AGACAGAAATGGTCTTTGATTATAAGTGGATCTATTGCATTCATTTCTGG
TACATTGAGTCTCTTTTCTCACCATACCAGATGCATTTTAATGTTGATTC
TACCAGGAATGATTACTGGAAAAGGACGCGCGTCTTTGTTGAGTATGGCC
ATTGGTTTTCTTATGGAAGGTCCTATAAACAATATCAACAATAATATCAA
TGAAGCAGTCGAGAGTAGCACATGCATGTATAAATTCATGAAAGATTTGC
CGGAATTTCCTTTTGTTAATGTTCCCAATGTTGATGATATTCAATTGAAG
ATTCTTACTGCAATTAAAGAACTTTTTGATGATGCTCAGTATTACTATAA
AAATATTGGAAATTTCTTCTTCATTGGTTCGCTTATTATNTCAGTATTAC
TATAAATGGCATCGAAGGCGTCGAAAAATATTCATTCAATCATAGAAGGC
TTTGAGGTAAAAGAAGCAAAGCCCGAGGAGAAAAAACCGAAGGAAAAGAA
AAGACTAGTTAAACAGAAGACATCAAAGAAAAATCCTAAAACATCAAAAT
CATCAGCTCCTAAAAGCAAGACATGTTTCCGTTTGCTAAAGCATTTTCTA
CAAACATCGCGTTTTTCAGCTTTGCCATTGATTCTTGTACAATTTTCTCT
GTTGTACCTTTATTTATACTACATGGTTTTAGAATCTGAAATTAACAACT
CGCTAAGACAGAAATGGTCTTTGATTATAAGTGGATCTATTGCATTCATT
TCTGGTACATTGAGTCTCTTTTCTCACCATACCAGATGCATTTTAATGTT
GATTCTACCAGGAATGATTACTGGAAAAGGACGCGCGTCTTTGTTGAGTA
TGGCCATTGGTTTTCTTATGGAAGGTCCTATAAACAATATCAACAATAAT
ATCAATGAAGCAGTCGAGAGTAGCACATGCATGTATAAATTCATGAAAGA
TTTGCCGGAATTTCCTTTTGTTAATGTTCCCAATGTTGATGATATTCAAT
TGAAGATTCTTACTGCAATTAAAGAACTTTTTGATGATGCTCAGTATTAC
TATAAAAATATTGGAAATTTCTTCTTCATTGGTTCGCTTATTATNTCAGT
ATTACTATAAATGGCATCGAAGGCGTCGAAAAATATTCATTCAATCATAG
AAGGCTTTGAGGTAAAAGAAGCAAAGCCCGAGGAGAAAAAACCGAAGGAA
AAGAAAAGACTAGTTAAACAGAAGACATCAAAGAAAAATCCTAAAACATC
AAAATCATCAGCTCCTAAAAGCAAGACATGTTTCCGTTTGCTAAAGCATT
TTCTACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039654XLOC_039654Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063276-proteinTCONS_00063276-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063276-exon-scaffold_385-1575043694:260783..261216TCONS_00063276-exon-scaffold_385-1575043694:260783..261216Clytia hemisphaericaexon
TCONS_00063276-exon-scaffold_385-1575043694:258955..260710TCONS_00063276-exon-scaffold_385-1575043694:258955..260710Clytia hemisphaericaexon
TCONS_00063276-exon-scaffold_385-1510915933:260783..261216TCONS_00063276-exon-scaffold_385-1510915933:260783..261216Clytia hemisphaericaexon
TCONS_00063276-exon-scaffold_385-1510915933:258955..260710TCONS_00063276-exon-scaffold_385-1510915933:258955..260710Clytia hemisphaericaexon
TCONS_00063276-exon-scaffold_385-1491911889:260783..261216TCONS_00063276-exon-scaffold_385-1491911889:260783..261216Clytia hemisphaericaexon
TCONS_00063276-exon-scaffold_385-1491911889:258955..260710TCONS_00063276-exon-scaffold_385-1491911889:258955..260710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:258955..261216 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.268635	0.366746	0.24333	0.198384	0.0966052	0	0.184199	0.150889	0.166007	0.598187	0.0544327	0.0834911	0.488339	0.556623	2.13556	0.916713	0.34955	0.427177	1.06611	1.71325	0.0519463	0.126688	2.42303	2.4269	2.61502	3.38064	1.42429	1.3628	6.53973	7.81732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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