TCONS_00063272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063272
Unique NameTCONS_00063272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063272 ID=TCONS_00063272|Name=TCONS_00063272|organism=Clytia hemisphaerica|type=transcript|length=1759bp
CATTGAGAAACAGTTCTCTGTTTGGTGACCATAAAGTTGTTCGAGTCTTC
TCTTGCCCTGGTGTAATGGCACAAGATCCAATCAAAGGCCTTGAGAGGCG
CATGATGTCTATGTCCGATGATGATGCTGATCTAGATTCAACTCTTCTCC
TTGACTGTTTACGTAATGATTCCGAAGAAATCTATCATGTTCGTATCAAT
AATATTACGCTGGAGAAAGCGATTCTGTTGGCAATTTTTGATACATTGAA
AACAACGAAAACAATGAGGCATTTATCGCTAGCAGGAATACATTTCAAAG
ATGAAGAAGGATTGCTCTTTAATGAAGCAATGAAGGAAAATACCACCATT
GAAACATTGAATCTGGAATCAAATGAATTAACCAACATTTGTATTGAGCC
GCTATGTGAGATTTTGGAAACACATCCTGCAATCAGAGAATTCAAATGTT
CACACCAGAAACATGGTCTTGGATCACGTGGCGAAGAAGCCATGGCCAGA
GCATTGAACAAAAATGAACGACTCTTGAAAATCAGTTATCCTTTCAAAGT
TCCTTCAGCAAGAAGTGTGGCAGATAGGTGTCAAATCAGGAATGGAGAAA
TATTGCGTCAAAAACGAACGAAGGGTGAAGATTTTTATAATTACAAAGAA
GAGATAAAACAACGCGACGCGCATGTCCAACCATGGATCAAAGTACAAAC
CGTAGATAAGAACGAACAAATGAAATCCGATCTAGCTGACCAACGAGGAA
GGATGAAATCAGTGGGATCAGTATCGCAAATGCGAGCAGAATCAAAATTA
CGAGCTCGCGAAAACGCGAAACCAACTATGGACAATGAGTTAGCTAGTAA
ACTGAGCGCAGCTCGGAAATCTAGAGGCCGCTCTATCAAAGCCTCATAAA
ATAGTAGGCATGGTGGGAAGGTAAGATGAGAAGGAAAAATATTAGTAGAA
AAATAACAAGTAATCAATGTAAATAGTTATGGTTTATCAAATTAATCTTG
AGAtctaaattttaacaaaaaagtgTCACTTGAACTTAAAGTCCATCGGT
TTAACCATCCACTCTTTTAGCTACTGTGCCGAAACCACCATCAGGAGTCT
AAGCATGTTGCCTTAGTTTTTCAGGCTAGCaaaaatacacccccttctcg
cagacTCACTggaaacccttcccactggaaaaattggccaaaatatcgtc
cccagtggaaagttCTCCTTGCTTCTCAACTTTTGTccccgttgaaaata
atcaaatacgGTAATCCTCACTGTGAGAtatttattattgttattgttcC
ATCCCCActaagaattgaaatccccagccataaagaaTATCGAAATATGA
AATCTTATCAATTTTGGTCAGATATCTTTATCCTCACTGCTCGAAAAGTT
CTCaccgggtctatgagaaggggtgTAAAAGTAGTGGTCACTCaaagcga
atggactttagATTATCATTATTGACACCGTCTGAAAAAACTTCCTTTGA
AAATTATATCcctaatattttgatttttataaaaaaagtcagTTAGATTA
TTAGTCGTACTAATATGAAAAAATGCTGTAAATATTTTGTAAGTATGCTa
atatcattatttttcaataaaacagtAATTATCTCTAATTTAGCCCTTTA
AAGATCATATTCTGGACTTAAACGTTTATTAAACCCAAGATTCCCTTTTG
TTTAGTACTGAAACTTTTTCTAAATCACAGTATTATCCTAAAATATGGGG
AAATTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_385:183441..188994-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063272 ID=TCONS_00063272|Name=TCONS_00063272|organism=Clytia hemisphaerica|type=transcript|length=5554bp|location=Sequence derived from alignment at scaffold_385:183441..188994- (Clytia hemisphaerica)
CATTGAGAAACAGTTCTCTGTTTGGTGACCATAAAGTTGTTCGAGTCTTC
TCTTGCCCTGGTGTAATGGCACAAGGTATATTATTTTTTGTATTTCCTGT
TCCTTATTACCTACTAAAAGGTAAATTCTATTGATATTCGTTGCTGTGTC
CTGATGCCTTAACAGGTGCTACCGGTGCCACAGCCTCCTCTAAGACATGA
TTAATGGTCTCTATAGTCCTTATTAAGACACTTGGCTCTCACTGAATATC
TATTTAAAGTGACTTTGTAGAAACTTCTTTACTGCTTATAACGCCTGGGA
ATTTGAAATCAAAGAATCCCATGACTGTAAAATATAATTCATATTTTGCA
GGCTATATTTTGCATCTCTAGGTATCTTCAATACTTCAGTAGTGTAGAAT
GGTAATTACTCGAATACCACTTACTAAATGGCTTATCTACCTATATTAGC
ATTATAATGATTAACTCTGAAGTTTGTGGTAACACGTTTAAGATAACGTG
ATTCCAATGTCTCTAGGTGCGTTAGCAAAGCGCGTCTCTAAGTCTAGCCG
ACGCGCCGAACAAGCTCTTACCCAGTCCTTTCCTAACTTGATTTATTCTG
ATAGCTTTCAAGAAAGGCTTATATAGTTTACAGTAATCTAGAGTGGACTA
ACCTTACAGCCTGGGCACCAACCCTTTTGTCAATTATGTCTTAGCGGTAA
AGAACACTTCTCGGTGCATAAAAGGAGACTTGATATTTGAATCACAGCCC
TATTGTAAAAACACTTTGCTATGAAGAACTGATATTAGGAACCTGGGGTC
GAGCTTATTATTGACATTTTCATGCATTCATCGTGGGGTAGAACTCAATG
AATAAACTACCGTAGCTGATGTACAGTATATAATGCTCATCGACACAAAA
ATTTACGTCAAGGGACCAATATATTTCCTCGAAGTTAGAAAAGATTCGAA
TAACAGAGAGTGTTCACACTACTTCCCTGCTGAGGGGACCAACCAATGCT
TTAGTTCAAATTACCAAAAGATTCCAAATCCTAGATGCTCGATATAGCGA
GATTATGAATTCCAATAAAGAAATGGCAAAACAACGAACAGCTTATTGGA
TGAATGAAGAACACGCTGTCTACTTAAAACTGACTTTGAAATTAATTCTT
TTTGCAACTAAGTTTCTCATTAGTTTTGTTATTGTTCTTTCAGATCCAAT
CAAAGGCCTTGAGAGGCGCATGATGTCTATGTCCGATGATGATGCTGATC
TAGATTCAACTCTTCTCCTTGACTGTTTACGTAATGATTCCGAAGAAATC
TATCATGTTCGTATCAATAATATTACGCTGGAGAAAGCGATTCTGTTGGC
AATTTTTGATACATTGAAAACAACGAAAACAATGAGGCATTTATCGCTAG
CAGGAATACATTTCAAAGATGAAGAAGGATTGGTATGTGAAAAAATTTTG
TACAATAATTAACCCCCACCTAGCTGGCACATAACGTTGTTTCAACGTTC
ACCTAACGTTATATGGACGTGGACGTTAGATAAACGTCGAAACAACGTTG
TGTGCCAGCTGGGCAGGGTTACTGGGTTTCTTTTGGAATCATTTTCTTCC
AAACTTTGCTTGATTTCAAAAAATGTTGGTCCAAATTTTTTCAAAAAACG
ATAATACTTAGAGGAAGGAAACTTTTTTATTTCAAGACCTTGGAACCCTT
TTAGCTGGTAGGTTTTTGTATTCCTAAAAGAGAAGTAAGAACTTTCAATA
CTCTATATGCTTTTGCTATTCGAAGATATATTTTGATGACTTGAAAAATT
GGAAGATAAATCAGTTTTTTCAATACTAGGATTCTTTTGTCATTATTTTC
AGCTCTTTAATGAAGCAATGAAGGAAAATACCACCATTGAAACATTGAAT
CTGGAATCAAATGAATTAACCAACATTTGTATTGAGGTAAGCATATAATC
TAGCTAAATGCTCTTTAGGATTCGTTTAAAATTCTCCACCCTCTGTCTCA
CAGACCCGATGGGAACTTTTCCCCACTGGCAAGATAAAGGTTTCTAACAT
CCCCTTCTCACAGACCTGGTAGGATTTTTTTGCAGCCAGTGGGAATAGAA
ATAACTGACTAAAACTCAATGGGGATTGATATTCCCATATTTTCTATGGC
TGGGGGATTTCACTTCTTTTGTTTTCAAGTCAGAAAATTCAGTGGGAATG
GGAAAAATAGCAAAGTAATTTCCTACCAGAGACGACATTTCTAGTGGGAA
GAGGTCCCAGTGGGTCTGTGCGAAGGGGGTGCTTTCTATCCAAATCCCAA
TTATTTGGATAGAAACTATATCATTTCCAGTTCTAAAAATTAAGTGATGA
TGGCTCTGTAGTGCATTTATTTACATTAATGAGGTTGATCCAACTGGGGC
TGAAATTGCAGGGTTATTTTTCCTAGCGGGGACGAAATTTTAGTCAAATT
TTCCAGTTGGACCGAGTCTGTGATATAAGGGGTGTAATTTTTCACATCAA
TGCAATGTGTAGAGGAATTCGGTCATTTTTTTGCCTTTCCTCCATAGTAT
CAAAGGACACATATTATATTATCACAAAATGTCTCACATGGTTTCATCTG
TACCCTCATGAAAAATATAGTTGATAAAAACCTTAGAGAACGATAAACCA
ATATCATACTGAGCCATTTATCAATGCTAGTTTAATATATATTAATCAAT
TAAATCTTTGAAATGTCAAGCTTTTATTGTCCTTTAGCTATCTAATCATT
AAATCAAACTTTTGAAGCCAAACTTCCTTAAATGTAGATGCCAATTGTTT
ATGTCTGTTTACTTAACAGTTCCTTATGCTGTGATAATCTCGTATCTAGT
CTCTGCATGAGCTCTTTGAGGTATTTCTCTCTGATCGAGATTAATTATTG
AGTTGTGCACATGCATATCACGAAAGTTTTAAATTCGTCTCTCATGCTCA
TATGTGATGACATCATGTTTTAAAAATGCTTTAACTCATCCTTTTCCCTT
TAGCTTGACAGCTGAGCGAATCCTTTAAGAAAGAAAAAAGGTCTTGAATT
AACAGCTTCTGGATTCTGATGTGTCAGAACGTTCCATTCTCCAAGTAACT
TTTTTGTAACAGTATTACAAATTGAGAAATCTTTGAATTCGAGACAATTT
CTTTTTTTGTATTTCAGCCGCTATGTGAGATTTTGGAAACACATCCTGCA
ATCAGAGAATTCAAATGTTCACACCAGGTATAAAATATTACACTCCTGTC
TCGTCAATGCGAGATATCAATGTTATCCACTGTCTTGCAACGTTGCCTAT
CTCAATTAACCAGTTTACAACCTTGTCTCAGTGGCCCATTTACTCCCCTC
TAAGCAACAATTTTTCATTATTTCCAAACAAAACCTTTTAATGGCTGTTG
GTAATCCTACACATCTAAGATCTTGTCTCATTGACACTTCTCCACCCCTG
TCTCAGACTCACACATCCAACAAATTGTCTCAATAAACTACATCCCTGTC
TCTATAACATATTTATACATCACACTCTCACAGTAAAACGATTAGCTCAA
TGAGGGGGAGGGCACTGGGTTTACCAACTGACGGTATGTATCGCAAAAAC
AAAAAAAATGGTGAAACTCGTACCCTTAGAGTGCATATCAAATTTTTAAC
CCCTTTAGAGAAGATTTTCTGGGAAGATTTCTTGATTTTCTCGCAGATTT
ACTAAAATTTTCCTTACAATGCGTTTATCAAAAAGTTGACCTTTACAGTC
TATTTATGCTATCTTGAAAAACCGCCGCACTGTAATGCTTTTCAGTGAAT
TTGCCTGACTATACCCTGACCGACCGACCGATGAACTCTCAATAATAAAC
AACACTACATCTTCCTTCAGAAACATGGTCTTGGATCACGTGGCGAAGAA
GCCATGGCCAGAGCATTGAACAAAAATGAACGACTCTTGAAAATCAGTTA
TCCTTTCAAAGTTCCTTCAGCAAGAAGTGTGGCAGATAGGTGTCAAATCA
GGAATGGAGAAATATGTAAATCACTACTTAATTTTTTTCAAATATTTTCG
ACTTTTTACCCTTATTTCACCCCTCTAAACGGTATATATAAGACTTTTTA
AATTAAAAAAAATTACTTTGCGAAATATTGGAGGCGCCATGGCCCCCCTG
CCACCCGGGTGACGGGGGCCATGGTATTGCTCTTATTTTGTTCTTCATTT
CAGGCAAATTTTACTTATTTCACGCTCAAATATCCTTAAACGTGCAGAGG
TTTCTAATGTGAATGACCCAACTCTGTCACATGTACTCTGTGTGTTAGAT
CCACCCGCATGTGAATATTTTGGGATTAAATATTTATCTCCAACCCCAAT
GGCACGCTTAAACAAAAGGTATGAAATGTTTTTCAAATTACTTTTCAGTG
CGTCAAAAACGAACGAAGGGTGAAGATTTTTATAATTACAAAGAAGAGAT
AAAACAACGCGACGCGCATGTCCAACCATGGATCAAAGTACAAACCGTAG
ATAAGAACGAACAAATGAAATCCGATCTAGCTGACCAACGAGGAAGGATG
AAATCAGTGGGATCAGTATCGCAAATGCGAGCAGAATCAAAATTACGAGC
TCGCGAAAACGCGAAACCAACTATGGACAATGAGTTAGCTAGTAAACTGA
GCGCAGCTCGGAAATCTAGAGGCCGCTCTATCAAAGCCTCATAAAATAGT
AGGCATGGTGGGAAGGTAAGATGAGAAGGAAAAATATTAGTAGAAAAATA
ACAAGTAATCAATGTAAATAGTTATGGTTTATCAAATTAATCTTGAGATC
TAAATTTTAACAAAAAAGTGTCACTTGAACTTAAAGTCCATCGGTTTAAC
CATCCACTCTTTTAGCTACTGTGCCGAAACCACCATCAGGAGTCTAAGCA
TGTTGCCTTAGTTTTTCAGGCTAGCAAAAATACACCCCCTTCTCGCAGAC
TCACTGGAAACCCTTCCCACTGGAAAAATTGGCCAAAATATCGTCCCCAG
TGGAAAGTTCTCCTTGCTTCTCAACTTTTGTCCCCGTTGAAAATAATCAA
ATACGGTAATCCTCACTGTGAGATATTTATTATTGTTATTGTTCCATCCC
CACTAAGAATTGAAATCCCCAGCCATAAAGAATATCGAAATATGAAATCT
TATCAATTTTGGTCAGATATCTTTATCCTCACTGCTCGAAAAGTTCTCAC
CGGGTCTATGAGAAGGGGTGTAAAAGTAGTGGTCACTCAAAGCGAATGGA
CTTTAGATTATCATTATTGACACCGTCTGAAAAAACTTCCTTTGAAAATT
ATATCCCTAATATTTTGATTTTTATAAAAAAAGTCAGTTAGATTATTAGT
CGTACTAATATGAAAAAATGCTGTAAATATTTTGTAAGTATGCTAATATC
ATTATTTTTCAATAAAACAGTAATTATCTCTAATTTAGCCCTTTAAAGAT
CATATTCTGGACTTAAACGTTTATTAAACCCAAGATTCCCTTTTGTTTAG
TACTGAAACTTTTTCTAAATCACAGTATTATCCTAAAATATGGGGAAATT
AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039653XLOC_039653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063272-exon-scaffold_385-1575043694:188920..188994TCONS_00063272-exon-scaffold_385-1575043694:188920..188994Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1575043694:187563..187801TCONS_00063272-exon-scaffold_385-1575043694:187563..187801Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1575043694:187059..187142TCONS_00063272-exon-scaffold_385-1575043694:187059..187142Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1575043694:185768..185827TCONS_00063272-exon-scaffold_385-1575043694:185768..185827Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1575043694:184980..185124TCONS_00063272-exon-scaffold_385-1575043694:184980..185124Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1575043694:183441..184596TCONS_00063272-exon-scaffold_385-1575043694:183441..184596Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1510915933:188920..188994TCONS_00063272-exon-scaffold_385-1510915933:188920..188994Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1510915933:187563..187801TCONS_00063272-exon-scaffold_385-1510915933:187563..187801Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1510915933:187059..187142TCONS_00063272-exon-scaffold_385-1510915933:187059..187142Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1510915933:185768..185827TCONS_00063272-exon-scaffold_385-1510915933:185768..185827Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1510915933:184980..185124TCONS_00063272-exon-scaffold_385-1510915933:184980..185124Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1510915933:183441..184596TCONS_00063272-exon-scaffold_385-1510915933:183441..184596Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1491911889:188920..188994TCONS_00063272-exon-scaffold_385-1491911889:188920..188994Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1491911889:187563..187801TCONS_00063272-exon-scaffold_385-1491911889:187563..187801Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1491911889:187059..187142TCONS_00063272-exon-scaffold_385-1491911889:187059..187142Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1491911889:185768..185827TCONS_00063272-exon-scaffold_385-1491911889:185768..185827Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1491911889:184980..185124TCONS_00063272-exon-scaffold_385-1491911889:184980..185124Clytia hemisphaericaexon
TCONS_00063272-exon-scaffold_385-1491911889:183441..184596TCONS_00063272-exon-scaffold_385-1491911889:183441..184596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:183441..188994 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.119148	0.26231	0.058622	0.17025	0	16.2423	20.7366	18.6933	15.3683	9.07489	8.66457	2.03483	2.862e-06	0.117575	0	1.94222	1.62531	1.54889	0.687819	9.31786	7.28913	0.961276	4.61067	0	0.00683917	0	0.0615157	0.153978	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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