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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063252 ID=TCONS_00063252|Name=TCONS_00063252|organism=Clytia hemisphaerica|type=transcript|length=4528bpRun BLAST on NCBI protein sequence of TCONS_00063252-protein >TCONS_00063252-protein ID=TCONS_00063252-protein|Name=TCONS_00063252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1243bp MATESLAPEPMTREEAKRILRRLELDAYSAVVTAFRAQGDMNKSKKSILGRun BLAST on NCBI transcript from alignment at scaffold_385:102934..120328+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063252 ID=TCONS_00063252|Name=TCONS_00063252|organism=Clytia hemisphaerica|type=transcript|length=17395bp|location=Sequence derived from alignment at scaffold_385:102934..120328+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_385:102934..120328+ >TCONS_00063252 ID=TCONS_00063252|Name=TCONS_00063252|organism=Clytia hemisphaerica|type=CDS|length=44784bp|location=Sequence derived from alignment at scaffold_385:102934..120328+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063252 vs. Swiss-Prot (Human)
Match: EMSY (BRCA2-interacting transcriptional repressor EMSY OS=Homo sapiens GN=EMSY PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 1.080e-37 Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 241 MTREEAKRILRRLELDAYSAVVTAFRAQGDMNKSKKSILGELSNQLSISTERHRAEVRRVVNDDRLNDVAECMHGPGTSTEWGIEGCRLVSLMPRLVPQTVFXXXXXXXXXXXXXXXXXLPIKSE 615
++R+E KRILR+LEL+AY+ V++A RAQGD+ K KK +LGELS LSISTERHRAEVRR VND+RL +A M GP +S+EW IEG RLV LMPRLVPQT FT A A AN A ++N LP+ +E
Sbjct: 11 LSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAE 135 The following BLAST results are available for this feature:
BLAST of TCONS_00063252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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