TCONS_00063245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063245
Unique NameTCONS_00063245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063245 ID=TCONS_00063245|Name=TCONS_00063245|organism=Clytia hemisphaerica|type=transcript|length=864bp
caacaacaacaaaaacaacaacaattatGCCCACTACAATAACAAgaata
acaaaaaaagaaacgaCATTGAAGACTACCAAGAAGCCCGATACCCCAAA
GCCCAATATCGAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGATCCTG
TTACCGCATTTATTACATTGTTAATCGGTTGTTTTTTAGCTAGTTTATTG
ATATCATCCGCTGTTCTTGTGATTGTTTATAAAAGAGCACTAGCTCGCCG
CACGATGCAGAGATTTTCGGCAGCTTCATTACAAAAGAACGTTTACAAGG
ATAATTACGAGGAAGAAAATCTCAATATAGAACCCAACATAATGCAAACA
CAAATAAACGATGGACAATACAATAATGACAACATAGTCCAACCACAAAT
AGACGATGGACAATACAATATTGATGGATATTGAGTTGTCAAAAATGACC
AGAGTTATTTTGTATATATAAGCAAGTCAATTTGCAAAAGACAATGAGAG
AAACCTTTAAACTTTTTGTATCTAGCTACATTCAcggatgagatggagtt
tttctAAGGGTGGATTTACATCTAGGAGAGAATCGATTTAGAAATACAAT
AGAAATACCACAATTTCTTTTGATTCCATCACGATTTTTTTGTAAGGCAT
AATTGATTTTCCCTAAGCTTTCTGATTGGATcaaattttattacaaaatg
aaaatggtTTTTCTATATTGACATTAAATATAGACATTTCAACTAGACAA
GTTCAagcttagcctggatatccagactgtaaagtatttcacagtctagt
ttttgatattttatgttctgctttacagcctggtctccctagagcgattt
gcattctccataTG
Run BLAST on NCBI

transcript from alignment at scaffold_385:2327..4144+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063245 ID=TCONS_00063245|Name=TCONS_00063245|organism=Clytia hemisphaerica|type=transcript|length=1818bp|location=Sequence derived from alignment at scaffold_385:2327..4144+ (Clytia hemisphaerica)
caacaacaacaaaaacaacaacaattatGCCCACTACAATAACAAgaata
acaaaaaaagaaacgaCATTGAAGACTACCAAGAAGCCCGATACCCCAAA
GCCCAATATCGAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGATCCTG
TTACCGCATTTATTACATTGTTAATCGGTTGTTTTTTAGCTAGTTTATTG
ATATCATCCGCTGTTCTTGTGATTGTTTATAAAAGAGCACTAGCTCGCCG
CACGATGCAGTAAGTACTCTACTTTATCTTGTTATATCACCTCGTCAAAG
GGATAAAACGAATGTTCCTTAAAGGTAGGGTACCCAAAATGGGGTACTTA
TTGGGGTACCCATTTAATTTACAGacccaataagggtcgtaaaattcaca
aaattacCGTAGTTCATGACTTTCATTCTAATGAGcctaaatttgataaa
tgaccaacaaaatttaaattcatCTTTTCACTTTGAAGTAAATAAGGCCA
GATTTCATAGAACTTGAGAAAATTTACTTAAAAGGAAGAATCAATCTATT
cataaaagttattctaaaaatgCACTCCGTGTCACTCGTTAAACTTGTTC
GATTGTTAAGAAACGACCTTCTATTCCCTCCTAGCTGTTTAGCAAatgaa
tacatgttttttttataagaacatccaaattttttgaaaccttaactttt
tgagttttaaacctaaagatattcttaacaCGTTCTTAATTTGACCATTC
TGTGAgtattttttactattttcctaagaaaacaggtgtttttgagtcca
taaagccttaaaatgttctaaattttTTCTTCGCATTTTGTCCATTGaag
acttatgttcttatatagtttgttcttataaaataaacgtGTAGATGGGT
TGAAGACAGCTCAATATTTAAAGGGAGtcttttgttcaatattttatgaG
TACACTGCAGAcaattctttttaaaacttCGATTCCAGGAGATTTTCGGC
AGCTTCATTACAAAAGAACGTTTACAAGGATAATTACGAGGAAGAAAATC
TCAATATAGAACCCAACATAATGCAAACACAAATAAACGATGGACAATAC
AATAATGACAACATAATGCCAACACAAATAAACGATGGACAATACAATAA
TGACAACATAATGCAACCACAAATAGACGATGGACAATACAATACTGGCA
ACATAATGCAACCACAAATAGACGATGGACAATACAACACTGCCAACATA
ATGCAACCACAAATAGACGATGGACAATACAATACTGGCAACATAGTCCA
ACCACAAATAGACGATGGACAATACAATACTGGCAACATAGTCCAACCAC
AAATAGACGATGGACAATACAATATTGATGGATATTGAGTTGTCAAAAAT
GACCAGAGTTATTTTGTATATATAAGCAAGTCAATTTGCAAAAGACAATG
AGAGAAACCTTTAAACTTTTTGTATCTAGCTACATTCAcggatgagatgg
agtttttctAAGGGTGGATTTACATCTAGGAGAGAATCGATTTAGAAATA
CAATAGAAATACCACAATTTCTTTTGATTCCATCACGATTTTTTTGTAAG
GCATAATTGATTTTCCCTAAGCTTTCTGATTGGATcaaattttattacaa
aatgaaaatggtTTTTCTATATTGACATTAAATATAGACATTTCAACTAG
ACAAGTTCAagcttagcctggatatccagactgtaaagtatttcacagtc
tagtttttgatattttatgttctgctttacagcctggtctccctagagcg
atttgcattctccataTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039633XLOC_039633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063245-exon-scaffold_385-1491911889:2327..2585TCONS_00063245-exon-scaffold_385-1491911889:2327..2585Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1510915933:2327..2585TCONS_00063245-exon-scaffold_385-1510915933:2327..2585Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1575043694:2327..2585TCONS_00063245-exon-scaffold_385-1575043694:2327..2585Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1491911889:3315..3438TCONS_00063245-exon-scaffold_385-1491911889:3315..3438Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1510915933:3315..3438TCONS_00063245-exon-scaffold_385-1510915933:3315..3438Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1575043694:3315..3438TCONS_00063245-exon-scaffold_385-1575043694:3315..3438Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1491911889:3664..4144TCONS_00063245-exon-scaffold_385-1491911889:3664..4144Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1510915933:3664..4144TCONS_00063245-exon-scaffold_385-1510915933:3664..4144Clytia hemisphaericaexon
TCONS_00063245-exon-scaffold_385-1575043694:3664..4144TCONS_00063245-exon-scaffold_385-1575043694:3664..4144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:2327..4144 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.417822	0	0.0912868	0.226147	0	0.0360733	0.00099229	0.187052	0	0.0660126	0	0.0416763	0	0	0	0	0	0	0	0	1.32891e-09	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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