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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063244 ID=TCONS_00063244|Name=TCONS_00063244|organism=Clytia hemisphaerica|type=transcript|length=1048bp
actacaacaacaacaaaaacaacaacaattatGCCCACTACAATAACAAg
aataacaaaaaaagaaacgaCATTGAAGACTACCAAGAAGCCCGATACCC
CAAAGCCCAATATCGAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGAT
CCTGTTACCGCATTTATTACATTGTTAATCGGTTGTTTTTTAGCTAGTTT
ATTGATATCATCCGCTGTTCTTGTGATTGTTTATAAAAGAGCACTAGCTC
GCCGCACGATGCAGAGATTTTCGGCAGCTTCATTACAAAAGAACGTTTAC
AAGGATAATTACGAGGAAGAAAATCTCAATATAGAACCCAACATAATGCA
AACACAAATAAACGATGGACAATACAATAATGACAACATAATGCCAACAC
AAATAAACGATGGACAATACAATAATGACAACATAATGCAACCACAAATA
GACGATGGACAATACAACACTGCCAACATAATGCAACCACAAATAGACGA
TGGACAATACAATACTGGCAACATAGTCCAACCACAAATAGACGATGGAC
AATACAATACTGGCAACATAGTCCAACCACAAATAGACGATGGACAATAC
AATATTGATGGATATTGAGTTGTCAAAAATGACCAGAGTTATTTTGTATA
TATAAGCAAGTCAATTTGCAAAAGACAATGAGAGAAACCTTTAAACTTTT
TGTATCTAGCTACATTCAcggatgagatggagtttttctAAGGGTGGATT
TACATCTAGGAGAGAATCGATTTAGAAATACAATAGAAATACCACAATTT
CTTTTGATTCCATCACGATTTTTTTGTAAGGCATAATTGATTTTCCCTAA
GCTTTCTGATTGGATcaaattttattacaaaatgaaaatggtTTTTCTAT
ATTGACATTAAATATAGACATTTCAACTAGACAAGTTCAagcttagcctg
gatatccagactgtaaagtatttcacagtctagtttttgatattttatgt
tctgctttacagcctggtctccctagagcgatttgcattctccataTG Run BLAST on NCBI protein sequence of TCONS_00063244-protein >TCONS_00063244-protein ID=TCONS_00063244-protein|Name=TCONS_00063244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
TTTTTKTTTIMPTTITRITKKETTLKTTKKPDTPKPNIEPVVGLKKEESD
PVTAFITLLIGCFLASLLISSAVLVIVYKRALARRTMQRFSAASLQKNVY
KDNYEEENLNIEPNIMQTQINDGQYNNDNIMPTQINDGQYNNDNIMQPQI
DDGQYNTANIMQPQIDDGQYNTGNIVQPQIDDGQYNTGNIVQPQIDDGQY
NIDGY Run BLAST on NCBI transcript from alignment at scaffold_385:2323..4144+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063244 ID=TCONS_00063244|Name=TCONS_00063244|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at scaffold_385:2323..4144+ (Clytia hemisphaerica)
actacaacaacaacaaaaacaacaacaattatGCCCACTACAATAACAAg
aataacaaaaaaagaaacgaCATTGAAGACTACCAAGAAGCCCGATACCC
CAAAGCCCAATATCGAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGAT
CCTGTTACCGCATTTATTACATTGTTAATCGGTTGTTTTTTAGCTAGTTT
ATTGATATCATCCGCTGTTCTTGTGATTGTTTATAAAAGAGCACTAGCTC
GCCGCACGATGCAGTAAGTACTCTACTTTATCTTGTTATATCACCTCGTC
AAAGGGATAAAACGAATGTTCCTTAAAGGTAGGGTACCCAAAATGGGGTA
CTTATTGGGGTACCCATTTAATTTACAGacccaataagggtcgtaaaatt
cacaaaattacCGTAGTTCATGACTTTCATTCTAATGAGcctaaatttga
taaatgaccaacaaaatttaaattcatCTTTTCACTTTGAAGTAAATAAG
GCCAGATTTCATAGAACTTGAGAAAATTTACTTAAAAGGAAGAATCAATC
TATTcataaaagttattctaaaaatgCACTCCGTGTCACTCGTTAAACTT
GTTCGATTGTTAAGAAACGACCTTCTATTCCCTCCTAGCTGTTTAGCAAa
tgaatacatgttttttttataagaacatccaaattttttgaaaccttaac
tttttgagttttaaacctaaagatattcttaacaCGTTCTTAATTTGACC
ATTCTGTGAgtattttttactattttcctaagaaaacaggtgtttttgag
tccataaagccttaaaatgttctaaattttTTCTTCGCATTTTGTCCATT
GaagacttatgttcttatatagtttgttcttataaaataaacgtGTAGAT
GGGTTGAAGACAGCTCAATATTTAAAGGGAGtcttttgttcaatatttta
tgaGTACACTGCAGAcaattctttttaaaacttCGATTCCAGGAGATTTT
CGGCAGCTTCATTACAAAAGAACGTTTACAAGGATAATTACGAGGAAGAA
AATCTCAATATAGAACCCAACATAATGCAAACACAAATAAACGATGGACA
ATACAATAATGACAACATAATGCCAACACAAATAAACGATGGACAATACA
ATAATGACAACATAATGCAACCACAAATAGACGATGGACAATACAATACT
GGCAACATAATGCAACCACAAATAGACGATGGACAATACAACACTGCCAA
CATAATGCAACCACAAATAGACGATGGACAATACAATACTGGCAACATAG
TCCAACCACAAATAGACGATGGACAATACAATACTGGCAACATAGTCCAA
CCACAAATAGACGATGGACAATACAATATTGATGGATATTGAGTTGTCAA
AAATGACCAGAGTTATTTTGTATATATAAGCAAGTCAATTTGCAAAAGAC
AATGAGAGAAACCTTTAAACTTTTTGTATCTAGCTACATTCAcggatgag
atggagtttttctAAGGGTGGATTTACATCTAGGAGAGAATCGATTTAGA
AATACAATAGAAATACCACAATTTCTTTTGATTCCATCACGATTTTTTTG
TAAGGCATAATTGATTTTCCCTAAGCTTTCTGATTGGATcaaattttatt
acaaaatgaaaatggtTTTTCTATATTGACATTAAATATAGACATTTCAA
CTAGACAAGTTCAagcttagcctggatatccagactgtaaagtatttcac
agtctagtttttgatattttatgttctgctttacagcctggtctccctag
agcgatttgcattctccataTG Coding sequence (CDS) from alignment at scaffold_385:2323..4144+ >TCONS_00063244 ID=TCONS_00063244|Name=TCONS_00063244|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_385:2323..4144+ (Clytia hemisphaerica)
actacaacaacaacaaaaacaacaacaattatGCCCACTACAATAACAAg
aataacaaaaaaagaaacgaCATTGAAGACTACCAAGAAGCCCGATACCC
CAAAGCCCAATATCGAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGAT
CCTGTTACCGCATTTATTACATTGTTAATCGGTTGTTTTTTAGCTAGTTT
ATTGATATCATCCGCTGTTCTTGTGATTGTTTATAAAAGAGCACTAGCTC
GCCGCACGATGCAGAGATTTTCGGCAGCTTCATTACAAAAGAACGTTTAC
AAGGATAATTACGAGGAAGAAAATCTCAATATAGAACCCAACATAATGCA
AACACAAATAAACGATGGACAATACAATAATGACAACATAATGCCAACAC
AAATAAACGATGGACAATACAATAATGACAACATAATGCAACCACAAATA
GACGATGGACAATACAACACTGCCAACATAATGCAACCACAAATAGACGA
TGGACAATACAATACTGGCAACATAGTCCAACCACAAATAGACGATGGAC
AATACAATACTGGCAACATAGTCCAACCACAAATAGACGATGGACAATAC
AATATTGATGGATATTGAactacaacaacaacaaaaacaacaacaattat
GCCCACTACAATAACAAgaataacaaaaaaagaaacgaCATTGAAGACTA
CCAAGAAGCCCGATACCCCAAAGCCCAATATCGAACCAGTGGTTGGTTTA
AAAAAGGAAGAATCGGATCCTGTTACCGCATTTATTACATTGTTAATCGG
TTGTTTTTTAGCTAGTTTATTGATATCATCCGCTGTTCTTGTGATTGTTT
ATAAAAGAGCACTAGCTCGCCGCACGATGCAGAGATTTTCGGCAGCTTCA
TTACAAAAGAACGTTTACAAGGATAATTACGAGGAAGAAAATCTCAATAT
AGAACCCAACATAATGCAAACACAAATAAACGATGGACAATACAATAATG
ACAACATAATGCCAACACAAATAAACGATGGACAATACAATAATGACAAC
ATAATGCAACCACAAATAGACGATGGACAATACAACACTGCCAACATAAT
GCAACCACAAATAGACGATGGACAATACAATACTGGCAACATAGTCCAAC
CACAAATAGACGATGGACAATACAATACTGGCAACATAGTCCAACCACAA
ATAGACGATGGACAATACAATATTGATGGATATTGAactacaacaacaac
aaaaacaacaacaattatGCCCACTACAATAACAAgaataacaaaaaaag
aaacgaCATTGAAGACTACCAAGAAGCCCGATACCCCAAAGCCCAATATC
GAACCAGTGGTTGGTTTAAAAAAGGAAGAATCGGATCCTGTTACCGCATT
TATTACATTGTTAATCGGTTGTTTTTTAGCTAGTTTATTGATATCATCCG
CTGTTCTTGTGATTGTTTATAAAAGAGCACTAGCTCGCCGCACGATGCAG
AGATTTTCGGCAGCTTCATTACAAAAGAACGTTTACAAGGATAATTACGA
GGAAGAAAATCTCAATATAGAACCCAACATAATGCAAACACAAATAAACG
ATGGACAATACAATAATGACAACATAATGCCAACACAAATAAACGATGGA
CAATACAATAATGACAACATAATGCAACCACAAATAGACGATGGACAATA
CAACACTGCCAACATAATGCAACCACAAATAGACGATGGACAATACAATA
CTGGCAACATAGTCCAACCACAAATAGACGATGGACAATACAATACTGGC
AACATAGTCCAACCACAAATAGACGATGGACAATACAATATTGATGGATA
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063244-exon-scaffold_385-1491911889:2323..2585 | TCONS_00063244-exon-scaffold_385-1491911889:2323..2585 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1510915933:2323..2585 | TCONS_00063244-exon-scaffold_385-1510915933:2323..2585 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1575043694:2323..2585 | TCONS_00063244-exon-scaffold_385-1575043694:2323..2585 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1491911889:3315..3483 | TCONS_00063244-exon-scaffold_385-1491911889:3315..3483 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1510915933:3315..3483 | TCONS_00063244-exon-scaffold_385-1510915933:3315..3483 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1575043694:3315..3483 | TCONS_00063244-exon-scaffold_385-1575043694:3315..3483 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1491911889:3529..4144 | TCONS_00063244-exon-scaffold_385-1491911889:3529..4144 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1510915933:3529..4144 | TCONS_00063244-exon-scaffold_385-1510915933:3529..4144 | Clytia hemisphaerica | exon |
| TCONS_00063244-exon-scaffold_385-1575043694:3529..4144 | TCONS_00063244-exon-scaffold_385-1575043694:3529..4144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:2323..4144 + |
Blast
The following BLAST results are available for this feature:
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