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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063242 ID=TCONS_00063242|Name=TCONS_00063242|organism=Clytia hemisphaerica|type=transcript|length=2246bp
GCATTCCAAAGAACAAGTTTCTGCTGCAGTCCATTCACTCCAAGGGGCAA
TGTACGTCCCGCATGGCGCTCTACCTGTCACAGATTACAATAACCCTGTT
TTATGGGTCGGTGCCTATCCTTGGTTGTTTCCTTATGGATTAGGGGGTCC
AGAAATCAAGCGCCACCCACCTGTTAGTTTGAAAACATACATCCGTCATA
TGTTACTACTTGCTGATAAAAGGTTTAGCATggatatttcttttaaattc
caCATCTTCAATGTTCTCCAGAAGCGCGACGTTTCTCTTCACACCTCACT
TTTGATTAGAAGACCCAATTTTCATTCTTCAGCGGCTGATATTGCTAGAA
TCACGCAaggaaatttggtacagatgttgcAATCTTTTGAGAATAAAACG
ACAATTACAGATCCAAACATTAAAACACTCATGAAAAGTCTTTCTTCGAC
TGGATCACACATTCGAGGTTCACCTTTTTGCAAGCAAAGCTACCGGAGGG
AAATCTTTGGTTTGATGATACGTTATGGGACGCCACCATTATGGATAACA
ATAAGCCCCGCAGTTGTCCATTCACCAATTTTCCTCTCTTTAAATGGGAA
TGAAATCGATTTCAGCAGGATATCAGCATCAGATCTACCATCCACTATTG
ATAGAGCAAGATACGTAGCAAATGACCCTGTCTCTGCTGCTAGATATTTC
AATATCGTTGTAAATGCTTTCACTTCGTATTTGTTAGGATATCACCAATC
AGGTGGTGGTATCTTTGGGACATCATCAGCATACTATGGTTGCATAGAGG
AGCAAGGAACTGGCACGTTACATATTCACATGCTGGTCTGGCTGGTAGGT
TTTAAAGCAATTACTGATCTAGAGACTGAGCTACAGAATGATATTTTCAA
GAACGATTTGGTGAATTATTTAGAATCGATCATCAAAGAAGGCTACATGG
ACGATGTTCAAACAGTACCTCAAGTAGAAGTTTCTGAAATATCATTGCGG
AGACCCGTGAACCCCTCGACAGAAGAATTTGCTGAAGAACTTGCCAATGA
TGTCAATAAGCTTGTAAAAGTCGCAAATACGCACAGACATACATTCACCT
GTTACAAGTATGGTAAATCACGAGAATGCAGGTTTGGGTTTCCACGTGAC
CTTTACCCTGAAACGGTTATAACCGAGAAcgaaatcaaattaaaaagaac
GAGCCCAATTATAAACAATTACAACCCGATCGTCATGACATGCATCAGAA
GCAACCACGACATCAAGTTTATCCCTAGTGGAAAGGACGGTAAGGCTTGT
GTGTTTTATATGACTGATTATGCCACCAAGTCGCAACTCTCAACCCACCA
AATGCTTCCGCTTATTGCAGCTTCAAGGAAAAAAATGGATATCGCTAATG
TACCAGGTGATTATATAAGCCGTTCCAAGATGTTGATTACAAAATGCCTT
AATAGGATAACTACAGAAGTAGAGATATCAGGGTCGCACGTTTGTCACTT
TTTATTGGGAAATTCCGACAAGAAGACGTCTCATTCTTTTGTCCGATTGA
ACTTGCATTCCAGTTTAGCATGGGTGCACGAAGAAATGCGACGATTCGAT
TGTCTTGACGAAGTATTCGACAACGAGGAAGATGAAGAACAACAAACACA
AGTGGGCTATAACATAACACTTGGAAATGAGGGGTTGGTTTTGGTTAATC
TAATGGTTGACTACATCAATAGAGGGTCAGAGCTATCCGATATTTGTCTC
TATAATTACTGCTCCAAAATTTACAAAGCTAAATTATCAGATGAAGAAAA
gagaaaactttccaaaaagaCAGGAGGCAGGGGACGCAAACCGCAGCCAC
GATACCTTTTTGCCGAAGGTCACCCTCAATCAGAAACCCATTTACAAATT
GAAAGGGCAGAAGCAGTCATTCCAGCCCTATCACTCCTACCACCCAGTGA
AGATGGTGACAAGGAAAAATTTTACACTTTTATGTTGTTACTCTTCAAAC
CTTTCTCGAATTTTGATCAGCTATACAATGGAATTAGCTGGGAAGAAACT
TATATGAACACTGACTTTAAGGAAAGTATTGGTTTTATTTGGAACATCAA
AGAAATGCATATTGgtatgaaagaaaaagaagaaagcatTCAAGTGCGTA
GCCCTGATGTTTTTGAAGGAAATCATGATAACGAAGAAGAAATCGATTTC
ACTCTTGAGGAGACTCGAAATGAAATTACACTTATTCGATCACAGG Run BLAST on NCBI protein sequence of TCONS_00063242-protein >TCONS_00063242-protein ID=TCONS_00063242-protein|Name=TCONS_00063242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp
HSKEQVSAAVHSLQGAMYVPHGALPVTDYNNPVLWVGAYPWLFPYGLGGP
EIKRHPPVSLKTYIRHMLLLADKRFSMDISFKFHIFNVLQKRDVSLHTSL
LIRRPNFHSSAADIARITQGNLVQMLQSFENKTTITDPNIKTLMKSLSST
GSHIRGSPFCKQSYRREIFGLMIRYGTPPLWITISPAVVHSPIFLSLNGN
EIDFSRISASDLPSTIDRARYVANDPVSAARYFNIVVNAFTSYLLGYHQS
GGGIFGTSSAYYGCIEEQGTGTLHIHMLVWLVGFKAITDLETELQNDIFK
NDLVNYLESIIKEGYMDDVQTVPQVEVSEISLRRPVNPSTEEFAEELAND
VNKLVKVANTHRHTFTCYKYGKSRECRFGFPRDLYPETVITENEIKLKRT
SPIINNYNPIVMTCIRSNHDIKFIPSGKDGKACVFYMTDYATKSQLSTHQ
MLPLIAASRKKMDIANVPGDYISRSKMLITKCLNRITTEVEISGSHVCHF
LLGNSDKKTSHSFVRLNLHSSLAWVHEEMRRFDCLDEVFDNEEDEEQQTQ
VGYNITLGNEGLVLVNLMVDYINRGSELSDICLYNYCSKIYKAKLSDEEK
RKLSKKTGGRGRKPQPRYLFAEGHPQSETHLQIERAEAVIPALSLLPPSE
DGDKEKFYTFMLLLFKPFSNFDQLYNGISWEETYMNTDFKESIGFIWNIK
EMHIGMKEKEESIQVRSPDVFEGNHDNEEEIDFTLEETRNEITLIRSQ Run BLAST on NCBI transcript from alignment at scaffold_384:379509..381754 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063242 ID=TCONS_00063242|Name=TCONS_00063242|organism=Clytia hemisphaerica|type=transcript|length=2246bp|location=Sequence derived from alignment at scaffold_384:379509..381754 (Clytia hemisphaerica)
CCTGTGATCGAATAAGTGTAATTTCATTTCGAGTCTCCTCAAGAGTGAAA
TCGATTTCTTCTTCGTTATCATGATTTCCTTCAAAAACATCAGGGCTACG
CACTTGAatgctttcttctttttctttcatacCAATATGCATTTCTTTGA
TGTTCCAAATAAAACCAATACTTTCCTTAAAGTCAGTGTTCATATAAGTT
TCTTCCCAGCTAATTCCATTGTATAGCTGATCAAAATTCGAGAAAGGTTT
GAAGAGTAACAACATAAAAGTGTAAAATTTTTCCTTGTCACCATCTTCAC
TGGGTGGTAGGAGTGATAGGGCTGGAATGACTGCTTCTGCCCTTTCAATT
TGTAAATGGGTTTCTGATTGAGGGTGACCTTCGGCAAAAAGGTATCGTGG
CTGCGGTTTGCGTCCCCTGCCTCCTGtctttttggaaagttttctcTTTT
CTTCATCTGATAATTTAGCTTTGTAAATTTTGGAGCAGTAATTATAGAGA
CAAATATCGGATAGCTCTGACCCTCTATTGATGTAGTCAACCATTAGATT
AACCAAAACCAACCCCTCATTTCCAAGTGTTATGTTATAGCCCACTTGTG
TTTGTTGTTCTTCATCTTCCTCGTTGTCGAATACTTCGTCAAGACAATCG
AATCGTCGCATTTCTTCGTGCACCCATGCTAAACTGGAATGCAAGTTCAA
TCGGACAAAAGAATGAGACGTCTTCTTGTCGGAATTTCCCAATAAAAAGT
GACAAACGTGCGACCCTGATATCTCTACTTCTGTAGTTATCCTATTAAGG
CATTTTGTAATCAACATCTTGGAACGGCTTATATAATCACCTGGTACATT
AGCGATATCCATTTTTTTCCTTGAAGCTGCAATAAGCGGAAGCATTTGGT
GGGTTGAGAGTTGCGACTTGGTGGCATAATCAGTCATATAAAACACACAA
GCCTTACCGTCCTTTCCACTAGGGATAAACTTGATGTCGTGGTTGCTTCT
GATGCATGTCATGACGATCGGGTTGTAATTGTTTATAATTGGGCTCgttc
tttttaatttgatttcgTTCTCGGTTATAACCGTTTCAGGGTAAAGGTCA
CGTGGAAACCCAAACCTGCATTCTCGTGATTTACCATACTTGTAACAGGT
GAATGTATGTCTGTGCGTATTTGCGACTTTTACAAGCTTATTGACATCAT
TGGCAAGTTCTTCAGCAAATTCTTCTGTCGAGGGGTTCACGGGTCTCCGC
AATGATATTTCAGAAACTTCTACTTGAGGTACTGTTTGAACATCGTCCAT
GTAGCCTTCTTTGATGATCGATTCTAAATAATTCACCAAATCGTTCTTGA
AAATATCATTCTGTAGCTCAGTCTCTAGATCAGTAATTGCTTTAAAACCT
ACCAGCCAGACCAGCATGTGAATATGTAACGTGCCAGTTCCTTGCTCCTC
TATGCAACCATAGTATGCTGATGATGTCCCAAAGATACCACCACCTGATT
GGTGATATCCTAACAAATACGAAGTGAAAGCATTTACAACGATATTGAAA
TATCTAGCAGCAGAGACAGGGTCATTTGCTACGTATCTTGCTCTATCAAT
AGTGGATGGTAGATCTGATGCTGATATCCTGCTGAAATCGATTTCATTCC
CATTTAAAGAGAGGAAAATTGGTGAATGGACAACTGCGGGGCTTATTGTT
ATCCATAATGGTGGCGTCCCATAACGTATCATCAAACCAAAGATTTCCCT
CCGGTAGCTTTGCTTGCAAAAAGGTGAACCTCGAATGTGTGATCCAGTCG
AAGAAAGACTTTTCATGAGTGTTTTAATGTTTGGATCTGTAATTGTCGTT
TTATTCTCAAAAGATTgcaacatctgtaccaaatttcctTGCGTGATTCT
AGCAATATCAGCCGCTGAAGAATGAAAATTGGGTCTTCTAATCAAAAGTG
AGGTGTGAAGAGAAACGTCGCGCTTCTGGAGAACATTGAAGATGtggaat
ttaaaagaaatatccATGCTAAACCTTTTATCAGCAAGTAGTAACATATG
ACGGATGTATGTTTTCAAACTAACAGGTGGGTGGCGCTTGATTTCTGGAC
CCCCTAATCCATAAGGAAACAACCAAGGATAGGCACCGACCCATAAAACA
GGGTTATTGTAATCTGTGACAGGTAGAGCGCCATGCGGGACGTACATTGC
CCCTTGGAGTGAATGGACTGCAGCAGAAACTTGTTCTTTGGAATGC Coding sequence (CDS) from alignment at scaffold_384:379509..381754 >TCONS_00063242 ID=TCONS_00063242|Name=TCONS_00063242|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_384:379509..381754 (Clytia hemisphaerica)
CTGTGATCGAATAAGTGTAATTTCATTTCGAGTCTCCTCAAGAGTGAAAT
CGATTTCTTCTTCGTTATCATGATTTCCTTCAAAAACATCAGGGCTACGC
ACTTGAatgctttcttctttttctttcatacCAATATGCATTTCTTTGAT
GTTCCAAATAAAACCAATACTTTCCTTAAAGTCAGTGTTCATATAAGTTT
CTTCCCAGCTAATTCCATTGTATAGCTGATCAAAATTCGAGAAAGGTTTG
AAGAGTAACAACATAAAAGTGTAAAATTTTTCCTTGTCACCATCTTCACT
GGGTGGTAGGAGTGATAGGGCTGGAATGACTGCTTCTGCCCTTTCAATTT
GTAAATGGGTTTCTGATTGAGGGTGACCTTCGGCAAAAAGGTATCGTGGC
TGCGGTTTGCGTCCCCTGCCTCCTGtctttttggaaagttttctcTTTTC
TTCATCTGATAATTTAGCTTTGTAAATTTTGGAGCAGTAATTATAGAGAC
AAATATCGGATAGCTCTGACCCTCTATTGATGTAGTCAACCATTAGATTA
ACCAAAACCAACCCCTCATTTCCAAGTGTTATGTTATAGCCCACTTGTGT
TTGTTGTTCTTCATCTTCCTCGTTGTCGAATACTTCGTCAAGACAATCGA
ATCGTCGCATTTCTTCGTGCACCCATGCTAAACTGGAATGCAAGTTCAAT
CGGACAAAAGAATGAGACGTCTTCTTGTCGGAATTTCCCAATAAAAAGTG
ACAAACGTGCGACCCTGATATCTCTACTTCTGTAGTTATCCTATTAAGGC
ATTTTGTAATCAACATCTTGGAACGGCTTATATAATCACCTGGTACATTA
GCGATATCCATTTTTTTCCTTGAAGCTGCAATAAGCGGAAGCATTTGGTG
GGTTGAGAGTTGCGACTTGGTGGCATAATCAGTCATATAAAACACACAAG
CCTTACCGTCCTTTCCACTAGGGATAAACTTGATGTCGTGGTTGCTTCTG
ATGCATGTCATGACGATCGGGTTGTAATTGTTTATAATTGGGCTCgttct
ttttaatttgatttcgTTCTCGGTTATAACCGTTTCAGGGTAAAGGTCAC
GTGGAAACCCAAACCTGCATTCTCGTGATTTACCATACTTGTAACAGGTG
AATGTATGTCTGTGCGTATTTGCGACTTTTACAAGCTTATTGACATCATT
GGCAAGTTCTTCAGCAAATTCTTCTGTCGAGGGGTTCACGGGTCTCCGCA
ATGATATTTCAGAAACTTCTACTTGAGGTACTGTTTGAACATCGTCCATG
TAGCCTTCTTTGATGATCGATTCTAAATAATTCACCAAATCGTTCTTGAA
AATATCATTCTGTAGCTCAGTCTCTAGATCAGTAATTGCTTTAAAACCTA
CCAGCCAGACCAGCATGTGAATATGTAACGTGCCAGTTCCTTGCTCCTCT
ATGCAACCATAGTATGCTGATGATGTCCCAAAGATACCACCACCTGATTG
GTGATATCCTAACAAATACGAAGTGAAAGCATTTACAACGATATTGAAAT
ATCTAGCAGCAGAGACAGGGTCATTTGCTACGTATCTTGCTCTATCAATA
GTGGATGGTAGATCTGATGCTGATATCCTGCTGAAATCGATTTCATTCCC
ATTTAAAGAGAGGAAAATTGGTGAATGGACAACTGCGGGGCTTATTGTTA
TCCATAATGGTGGCGTCCCATAACGTATCATCAAACCAAAGATTTCCCTC
CGGTAGCTTTGCTTGCAAAAAGGTGAACCTCGAATGTGTGATCCAGTCGA
AGAAAGACTTTTCATGAGTGTTTTAATGTTTGGATCTGTAATTGTCGTTT
TATTCTCAAAAGATTgcaacatctgtaccaaatttcctTGCGTGATTCTA
GCAATATCAGCCGCTGAAGAATGAAAATTGGGTCTTCTAATCAAAAGTGA
GGTGTGAAGAGAAACGTCGCGCTTCTGGAGAACATTGAAGATGtggaatt
taaaagaaatatccATGCTAAACCTTTTATCAGCAAGTAGTAACATATGA
CGGATGTATGTTTTCAAACTAACAGGTGGGTGGCGCTTGATTTCTGGACC
CCCTAATCCATAAGGAAACAACCAAGGATAGGCACCGACCCATAAAACAG
GGTTATTGTAATCTGTGACAGGTAGAGCGCCATGCGGGACGTACATTGCC
CCTTGGAGTGAATGGACTGCAGCAGAAACTTGTTCTTTGGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063242-exon-scaffold_384-1491911889:379509..381754 | TCONS_00063242-exon-scaffold_384-1491911889:379509..381754 | Clytia hemisphaerica | exon |
| TCONS_00063242-exon-scaffold_384-1510915933:379509..381754 | TCONS_00063242-exon-scaffold_384-1510915933:379509..381754 | Clytia hemisphaerica | exon |
| TCONS_00063242-exon-scaffold_384-1575043694:379509..381754 | TCONS_00063242-exon-scaffold_384-1575043694:379509..381754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:379509..381754 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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