TCONS_00063239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063239
Unique NameTCONS_00063239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063239 ID=TCONS_00063239|Name=TCONS_00063239|organism=Clytia hemisphaerica|type=transcript|length=578bp
tgaaaataaaattaccgaaaccattttcaaaaaattaaaaccagGTGGTA
GTCAGCCAGCACGCTTGTATGGACTCGCCAAAATACATAAAGATGGTGTA
CCTTTACGCCCTGTGTTGTCAATGCCTGGCTCAGCCTACTTCAAAATTGC
AAAGCAAGTCGCAGATTGGCTCTCAGTAGTGTCAGAATGTCGCATCAATT
CTTCTACTAAAGAAATAGCCGATAGTTTGAGTGATATTGAACTTGATGAT
GATACCGAGATCGTTAGTTTTGATGTTGTATCACTGTATACGAATGTCCC
GGTTGATGATGCAATCTCAGTGTGTGCGGATCTTCTTTACGACGGACGTT
ATGAAAAACCACCTGTCGACAAGGAAACATTTGTCCAGCTAGTCACCATG
TGTAGCAAGAATGTAATCATGCTAACAAACGATGGATTTTACCGCCAAAA
TGATGGATTGGCCATGGGGAGCCCACCTGCACCGATGCTTGCCAATGGCT
GGATGAGCACTTTCGATtcttcgatcaaagatgacgCAAGGTTGTACAGT
CGATATATGGATGACATTTTGAGGGANN
Run BLAST on NCBI

protein sequence of TCONS_00063239-protein

>TCONS_00063239-protein ID=TCONS_00063239-protein|Name=TCONS_00063239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
ENKITETIFKKLKPGGSQPARLYGLAKIHKDGVPLRPVLSMPGSAYFKIA
KQVADWLSVVSECRINSSTKEIADSLSDIELDDDTEIVSFDVVSLYTNVP
VDDAISVCADLLYDGRYEKPPVDKETFVQLVTMCSKNVIMLTNDGFYRQN
DGLAMGSPPAPMLANGWMSTFDSSIKDDARLYSRYMDDILRX
Run BLAST on NCBI

transcript from alignment at scaffold_384:357713..358290

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063239 ID=TCONS_00063239|Name=TCONS_00063239|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at scaffold_384:357713..358290 (Clytia hemisphaerica)
NNTCCCTCAAAATGTCATCCATATATCGACTGTACAACCTTGcgtcatct
ttgatcgaagaATCGAAAGTGCTCATCCAGCCATTGGCAAGCATCGGTGC
AGGTGGGCTCCCCATGGCCAATCCATCATTTTGGCGGTAAAATCCATCGT
TTGTTAGCATGATTACATTCTTGCTACACATGGTGACTAGCTGGACAAAT
GTTTCCTTGTCGACAGGTGGTTTTTCATAACGTCCGTCGTAAAGAAGATC
CGCACACACTGAGATTGCATCATCAACCGGGACATTCGTATACAGTGATA
CAACATCAAAACTAACGATCTCGGTATCATCATCAAGTTCAATATCACTC
AAACTATCGGCTATTTCTTTAGTAGAAGAATTGATGCGACATTCTGACAC
TACTGAGAGCCAATCTGCGACTTGCTTTGCAATTTTGAAGTAGGCTGAGC
CAGGCATTGACAACACAGGGCGTAAAGGTACACCATCTTTATGTATTTTG
GCGAGTCCATACAAGCGTGCTGGCTGACTACCACctggttttaatttttt
gaaaatggtttcggtaattttattttca

Coding sequence (CDS) from alignment at scaffold_384:357713..358290

>TCONS_00063239 ID=TCONS_00063239|Name=TCONS_00063239|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_384:357713..358290 (Clytia hemisphaerica)
NTCCCTCAAAATGTCATCCATATATCGACTGTACAACCTTGcgtcatctt
tgatcgaagaATCGAAAGTGCTCATCCAGCCATTGGCAAGCATCGGTGCA
GGTGGGCTCCCCATGGCCAATCCATCATTTTGGCGGTAAAATCCATCGTT
TGTTAGCATGATTACATTCTTGCTACACATGGTGACTAGCTGGACAAATG
TTTCCTTGTCGACAGGTGGTTTTTCATAACGTCCGTCGTAAAGAAGATCC
GCACACACTGAGATTGCATCATCAACCGGGACATTCGTATACAGTGATAC
AACATCAAAACTAACGATCTCGGTATCATCATCAAGTTCAATATCACTCA
AACTATCGGCTATTTCTTTAGTAGAAGAATTGATGCGACATTCTGACACT
ACTGAGAGCCAATCTGCGACTTGCTTTGCAATTTTGAAGTAGGCTGAGCC
AGGCATTGACAACACAGGGCGTAAAGGTACACCATCTTTATGTATTTTGG
CGAGTCCATACAAGCGTGCTGGCTGACTACCACctggttttaattttttg
aaaatggtttcggtaattttattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039629XLOC_039629Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063239-proteinTCONS_00063239-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063239-exon-scaffold_384-1491911889:357713..358290TCONS_00063239-exon-scaffold_384-1491911889:357713..358290Clytia hemisphaericaexon
TCONS_00063239-exon-scaffold_384-1510915933:357713..358290TCONS_00063239-exon-scaffold_384-1510915933:357713..358290Clytia hemisphaericaexon
TCONS_00063239-exon-scaffold_384-1575043694:357713..358290TCONS_00063239-exon-scaffold_384-1575043694:357713..358290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:357713..358290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15375	1.07626	2.11316	2.10558	0.536748	0.532835	0.383263	1.31724	0.755699	0.802852	0.194817	1.16581	0.461783	0.132812	0.343946	0.468708	0.505233	0.369891	0.40882	0	0.278877	0.136027	0.220477	0.100223	0	0.737023	0.70284	0.56279	0	0.938917
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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