TCONS_00063234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063234
Unique NameTCONS_00063234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063234 ID=TCONS_00063234|Name=TCONS_00063234|organism=Clytia hemisphaerica|type=transcript|length=419bp
AAACTATGTGTAGTTGGTTCCACGTTGTATTTGTCTGCAGTCTAAAAGCA
TTCATCAGGTCAGCTTCAATCACTGGCTTGATACCCACACGATGTAGCAT
TTCTTGGAGCTCTTTTTCATCAAACGTGTCAAGCAGTTTAGAGGCCTGGA
CTTGAATGGCCTTTTTGCTCGTTCCAGCTGCAAGACTCATCGTATCCATG
ACCTTTCTGTTGCGTTTTGCCACTGTCCTTTTGTGTGCTTGATCAGATGG
AACATAGCTCGTCGTTATTTTAGTAAAGGTAACgggctaaaattttgaaa
attgaaaaacctgaattaatatttgaaaattatttgaattttcttaGAAG
TGTAAAATTATAAAAGATAATGGTAAAATCTTGTGATTCATTTTATGATC
CGTccattttcatttggat
Run BLAST on NCBI

transcript from alignment at scaffold_384:274332..274750

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063234 ID=TCONS_00063234|Name=TCONS_00063234|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at scaffold_384:274332..274750 (Clytia hemisphaerica)
atccaaatgaaaatggACGGATCATAAAATGAATCACAAGATTTTACCAT
TATCTTTTATAATTTTACACTTCtaagaaaattcaaataattttcaaata
ttaattcaggtttttcaattttcaaaattttagcccGTTACCTTTACTAA
AATAACGACGAGCTATGTTCCATCTGATCAAGCACACAAAAGGACAGTGG
CAAAACGCAACAGAAAGGTCATGGATACGATGAGTCTTGCAGCTGGAACG
AGCAAAAAGGCCATTCAAGTCCAGGCCTCTAAACTGCTTGACACGTTTGA
TGAAAAAGAGCTCCAAGAAATGCTACATCGTGTGGGTATCAAGCCAGTGA
TTGAAGCTGACCTGATGAATGCTTTTAGACTGCAGACAAATACAACGTGG
AACCAACTACACATAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039624XLOC_039624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063234-exon-scaffold_384-1491911889:274332..274750TCONS_00063234-exon-scaffold_384-1491911889:274332..274750Clytia hemisphaericaexon
TCONS_00063234-exon-scaffold_384-1510915933:274332..274750TCONS_00063234-exon-scaffold_384-1510915933:274332..274750Clytia hemisphaericaexon
TCONS_00063234-exon-scaffold_384-1575043694:274332..274750TCONS_00063234-exon-scaffold_384-1575043694:274332..274750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:274332..274750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.59479	0	2.81091	1.22005	1.60699	1.63492	2.29758	1.85202	0.786504	0.816793	0	0.102948	0	0.259981	0	0	0	0	0.193705	0	0.965286	0.509339	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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