TCONS_00063231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063231
Unique NameTCONS_00063231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063231 ID=TCONS_00063231|Name=TCONS_00063231|organism=Clytia hemisphaerica|type=transcript|length=594bp
TGATGGGAGAGAGGGAGGAGATGACTCTTcctaaacaaaccaaaaaacgA
AACAAGGCAAATAGCCCAAAAAGAAGCGTGCTTGCTGTCAGAAAGTTCCA
AATGCTGTCGGATACGGTAAAGAATATCAGTCGTAATAGGAAGTCTAGGC
ACTGGAGGGGATCCCTTGGTGCGTTTGATACCTTTGAGAACAGAGctcaa
aaacaaattatctGTCAAGGGATTAACCAAACCATAGTCCTTGTGGAGTA
GGCCAACATAACTAATGTAGACGCAAACTGGCTGGGGCAACAAAAATCGA
GCCAAGTAGGCAGCATACAAAAAAGATGCACTGTAGAAACAGGAGCAGGT
GGGATGTCCAGCATGGAGCAAAAACGGAGGTAGGTCTTACGGTGAGTACG
ATAGGCCTTGTGTGTATTGGGGGCTAATGTAGCCTGTCGATAAAACAAAA
CATCGTTCAGGAGCGAAGGCGCGATGCGATGTCTTGCCCTAAAAAACAGA
TGAGAAGCAGAGGCTAGAGTGAAGCAGCCCcaccaaaaagaaaaacgagC
AAGGGGACAAGTGCCCCAATGCTGCAAGGTTCACAGAGTTAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_384:250864..251457

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063231 ID=TCONS_00063231|Name=TCONS_00063231|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at scaffold_384:250864..251457 (Clytia hemisphaerica)
TCCTAACTCTGTGAACCTTGCAGCATTGGGGCACTTGTCCCCTTGctcgt
ttttctttttggtgGGGCTGCTTCACTCTAGCCTCTGCTTCTCATCTGTT
TTTTAGGGCAAGACATCGCATCGCGCCTTCGCTCCTGAACGATGTTTTGT
TTTATCGACAGGCTACATTAGCCCCCAATACACACAAGGCCTATCGTACT
CACCGTAAGACCTACCTCCGTTTTTGCTCCATGCTGGACATCCCACCTGC
TCCTGTTTCTACAGTGCATCTTTTTTGTATGCTGCCTACTTGGCTCGATT
TTTGTTGCCCCAGCCAGTTTGCGTCTACATTAGTTATGTTGGCCTACTCC
ACAAGGACTATGGTTTGGTTAATCCCTTGACagataatttgtttttgagC
TCTGTTCTCAAAGGTATCAAACGCACCAAGGGATCCCCTCCAGTGCCTAG
ACTTCCTATTACGACTGATATTCTTTACCGTATCCGACAGCATTTGGAAC
TTTCTGACAGCAAGCACGCTTCTTTTTGGGCTATTTGCCTTGTTTcgttt
tttggtttgtttaggAAGAGTCATCTCCTCCCTCTCTCCCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039621XLOC_039621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063231-exon-scaffold_384-1491911889:250864..251457TCONS_00063231-exon-scaffold_384-1491911889:250864..251457Clytia hemisphaericaexon
TCONS_00063231-exon-scaffold_384-1510915933:250864..251457TCONS_00063231-exon-scaffold_384-1510915933:250864..251457Clytia hemisphaericaexon
TCONS_00063231-exon-scaffold_384-1575043694:250864..251457TCONS_00063231-exon-scaffold_384-1575043694:250864..251457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:250864..251457 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48377	0	0	0.102077	4.23491	4.06024	2.57667	3.49248	1.70082	1.54097	1.96873	1.18554	1.0328	0.643319	1.03455	0.645017	1.11729	1.17366	0.206519	0.12115	0.987396	0.337874	0.122381	0.288174	0.963664	0.732584	0.14684	0	0.158503	0.312619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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