TCONS_00063229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063229
Unique NameTCONS_00063229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063229 ID=TCONS_00063229|Name=TCONS_00063229|organism=Clytia hemisphaerica|type=transcript|length=541bp
TCCATGGGTAGCCATATGTGTGCTGCAAAACTCGAAATTCATCATCATAA
TGCAGCACAGACTGCCACGAGTATTTAGTCGCCAGTTCAAGAACCTTCAC
AGAGTAGGCAAGGTATTCCCTAATCTCCTGCATGGAGGAAAGCTtagttg
aaaacaaaagttcataaaaaattCTAAGGTTAGCTATATTAAATTTTTCT
ACTGTAACAGACGACAGTTTCGGTTTTGTATCTTGTAGAGAAAGTTTTAG
AACACAGTTATTGTCACTTGCAAACACTTTTTCTTCTTCTGAAGGACGTA
GCCTCGAAACAAAATCAACTATACGAAGAGGCTTACCACGAGTTAGATCA
TTCGTTCTTGTTGGACGTAGCAGGATCTCGCTTTGGTTGATTGTTGGACG
TCGAGGATGGAGAGTGGATTGTAAATGTGATTGTAAATCAAGATTCTGTT
GGGTTCCCAATAAAGGGAAGACGAAACGATGTGCGGAAGGACGGCTGTTG
TTGTAGTTTGGGGAATCCGCAGGAAAGCTTGATCCAATCCA
Run BLAST on NCBI

protein sequence of TCONS_00063229-protein

>TCONS_00063229-protein ID=TCONS_00063229-protein|Name=TCONS_00063229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
WIGSSFPADSPNYNNSRPSAHRFVFPLLGTQQNLDLQSHLQSTLHPRRPT
INQSEILLRPTRTNDLTRGKPLRIVDFVSRLRPSEEEKVFASDNNCVLKL
SLQDTKPKLSSVTVEKFNIANLRIFYELLFSTKLSSMQEIREYLAYSVKV
LELATKYSWQSVLHYDDEFRVLQHTYGYPW
Run BLAST on NCBI

transcript from alignment at scaffold_384:248909..249449

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063229 ID=TCONS_00063229|Name=TCONS_00063229|organism=Clytia hemisphaerica|type=transcript|length=541bp|location=Sequence derived from alignment at scaffold_384:248909..249449 (Clytia hemisphaerica)
TGGATTGGATCAAGCTTTCCTGCGGATTCCCCAAACTACAACAACAGCCG
TCCTTCCGCACATCGTTTCGTCTTCCCTTTATTGGGAACCCAACAGAATC
TTGATTTACAATCACATTTACAATCCACTCTCCATCCTCGACGTCCAACA
ATCAACCAAAGCGAGATCCTGCTACGTCCAACAAGAACGAATGATCTAAC
TCGTGGTAAGCCTCTTCGTATAGTTGATTTTGTTTCGAGGCTACGTCCTT
CAGAAGAAGAAAAAGTGTTTGCAAGTGACAATAACTGTGTTCTAAAACTT
TCTCTACAAGATACAAAACCGAAACTGTCGTCTGTTACAGTAGAAAAATT
TAATATAGCTAACCTTAGaattttttatgaacttttgttttcaactaAGC
TTTCCTCCATGCAGGAGATTAGGGAATACCTTGCCTACTCTGTGAAGGTT
CTTGAACTGGCGACTAAATACTCGTGGCAGTCTGTGCTGCATTATGATGA
TGAATTTCGAGTTTTGCAGCACACATATGGCTACCCATGGA

Coding sequence (CDS) from alignment at scaffold_384:248909..249449

>TCONS_00063229 ID=TCONS_00063229|Name=TCONS_00063229|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_384:248909..249449 (Clytia hemisphaerica)
TGGATTGGATCAAGCTTTCCTGCGGATTCCCCAAACTACAACAACAGCCG
TCCTTCCGCACATCGTTTCGTCTTCCCTTTATTGGGAACCCAACAGAATC
TTGATTTACAATCACATTTACAATCCACTCTCCATCCTCGACGTCCAACA
ATCAACCAAAGCGAGATCCTGCTACGTCCAACAAGAACGAATGATCTAAC
TCGTGGTAAGCCTCTTCGTATAGTTGATTTTGTTTCGAGGCTACGTCCTT
CAGAAGAAGAAAAAGTGTTTGCAAGTGACAATAACTGTGTTCTAAAACTT
TCTCTACAAGATACAAAACCGAAACTGTCGTCTGTTACAGTAGAAAAATT
TAATATAGCTAACCTTAGaattttttatgaacttttgttttcaactaAGC
TTTCCTCCATGCAGGAGATTAGGGAATACCTTGCCTACTCTGTGAAGGTT
CTTGAACTGGCGACTAAATACTCGTGGCAGTCTGTGCTGCATTATGATGA
TGAATTTCGAGTTTTGCAGCACACATATGGCTACCCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039619XLOC_039619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063229-exon-scaffold_384-1491911889:248909..249449TCONS_00063229-exon-scaffold_384-1491911889:248909..249449Clytia hemisphaericaexon
TCONS_00063229-exon-scaffold_384-1510915933:248909..249449TCONS_00063229-exon-scaffold_384-1510915933:248909..249449Clytia hemisphaericaexon
TCONS_00063229-exon-scaffold_384-1575043694:248909..249449TCONS_00063229-exon-scaffold_384-1575043694:248909..249449Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063229-proteinTCONS_00063229-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:248909..249449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153435	0.285649	0	0.495452	0.459681	0	0	0	0.831627	0.781314	1.32759	2.30574	1.02117	0.592841	1.34356	1.10783	1.5036	0.60626	0.41873	0.379279	1.01974	1.40549	0.490097	0.408328	0	0.683285	0.521836	0.745127	0.263123	0.165637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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