TCONS_00063228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063228
Unique NameTCONS_00063228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063228 ID=TCONS_00063228|Name=TCONS_00063228|organism=Clytia hemisphaerica|type=transcript|length=574bp
CTAAACACAGCACTCAGCATGCATTAATACAAATGATTGGTCAATGGCAT
CAAAGTCTTGATGGGTCCGGAAAGGTGGGGGCAGTTTTAATGGACCTATC
GAAGGCTTTCGATTGCATTGATCACAAACTTCTGGTTGCAAAGCTCAAAG
CCTACGCAATTAATACAAAGAGTCTTGAACTATTGAAAGGTTATCTGAGT
AATCTATCAGAGAACAAAAATCGGCTCTGAATACAGCGAATGGCAAGAGA
TCACTCTAGGTGTTCCACAAGGCTCGATTCTCGGGCctcttttatttaat
attttcataaatgatttatttctttttattgcGAAAGCTAGCATTTGCAA
TTTTGCCGATGATAATACCTTACACTCGTGTGCTAAAACTCTTGCAGAAG
TCATCTCGAATCTAGAGTTTGACCTGGAAATAATCTTAGACTGGTTTTTA
AACAACTACCTTGCTGCAAATCCTGGTAAATTTAAAATGCTAGTTTTAGG
AAATCAGAATATTCCTATAGAAATCACTGTCAGAAATGTAACTATAAAAT
CTACGAATTCTGTTGAGCTCCTCG
Run BLAST on NCBI

transcript from alignment at scaffold_384:246314..246887

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063228 ID=TCONS_00063228|Name=TCONS_00063228|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at scaffold_384:246314..246887 (Clytia hemisphaerica)
CGAGGAGCTCAACAGAATTCGTAGATTTTATAGTTACATTTCTGACAGTG
ATTTCTATAGGAATATTCTGATTTCCTAAAACTAGCATTTTAAATTTACC
AGGATTTGCAGCAAGGTAGTTGTTTAAAAACCAGTCTAAGATTATTTCCA
GGTCAAACTCTAGATTCGAGATGACTTCTGCAAGAGTTTTAGCACACGAG
TGTAAGGTATTATCATCGGCAAAATTGCAAATGCTAGCTTTCgcaataaa
aagaaataaatcatttatgaaaatattaaataaaagagGCCCGAGAATCG
AGCCTTGTGGAACACCTAGAGTGATCTCTTGCCATTCGCTGTATTCAGAG
CCGATTTTTGTTCTCTGATAGATTACTCAGATAACCTTTCAATAGTTCAA
GACTCTTTGTATTAATTGCGTAGGCTTTGAGCTTTGCAACCAGAAGTTTG
TGATCAATGCAATCGAAAGCCTTCGATAGGTCCATTAAAACTGCCCCCAC
CTTTCCGGACCCATCAAGACTTTGATGCCATTGACCAATCATTTGTATTA
ATGCATGCTGAGTGCTGTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039618XLOC_039618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063228-exon-scaffold_384-1491911889:246314..246887TCONS_00063228-exon-scaffold_384-1491911889:246314..246887Clytia hemisphaericaexon
TCONS_00063228-exon-scaffold_384-1510915933:246314..246887TCONS_00063228-exon-scaffold_384-1510915933:246314..246887Clytia hemisphaericaexon
TCONS_00063228-exon-scaffold_384-1575043694:246314..246887TCONS_00063228-exon-scaffold_384-1575043694:246314..246887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:246314..246887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.625519	0.450675	0.482429	0.439723	1.89112	1.52109	0.534364	1.84	1.18225	1.85523	1.32556	1.0108	1.08549	1.22236	0.192422	0.246036	0.244139	0.331178	0.263586	0.567713	0.460151	0.351794	0	0	1.30657	0.746693	1.77107	1.72513	0.346732	0.265818
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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