TCONS_00063226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063226
Unique NameTCONS_00063226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063226 ID=TCONS_00063226|Name=TCONS_00063226|organism=Clytia hemisphaerica|type=transcript|length=552bp
GCAGCCAGGACAATGACACTAGCAAAGTAAGAAGGCCCTTAGGTTACCGA
AGGTAAGCCAACACACCCAAAGTCACCCCAAATGCAAAACAACAACATAG
TAAAAACAACGGATAAAaggaaaaaagagagaaaactaAACACAATTATT
GTTGATGGTAAAACATTACCATTTATCTGGGTCCCAAATAGTAGAGGTAA
GTGTTAATGATGCTATGCGGGATTGAAAATGGTGTATATCATTGTCTGGA
ATTCTAAGATAACGTAAATAACGTCCTAGTGAGCGGATCATTGAGTCTGA
AGCACCCGATGACAGCGCGGCAGAGGCTCCACCGATTCGAAAACTGTGAG
TATTGATGTTGGGTACATTGGGAAGGGCCAAATTCAAAAGGGTAACTAGT
TGACGACGTGTAAAAAATTGACCATTAGATCTGACAAAAAGAGGACCCGT
TTGCGGTAAATTTGGCTGGAGATAAATTCTCATAGCTGCTACTGGGCAAA
GTCAATGGAAAAGGCTGGATAATCTAATTGTAGTTCTCTAACGAAATGGG
TC
Run BLAST on NCBI

transcript from alignment at scaffold_384:209165..209716

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063226 ID=TCONS_00063226|Name=TCONS_00063226|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at scaffold_384:209165..209716 (Clytia hemisphaerica)
GACCCATTTCGTTAGAGAACTACAATTAGATTATCCAGCCTTTTCCATTG
ACTTTGCCCAGTAGCAGCTATGAGAATTTATCTCCAGCCAAATTTACCGC
AAACGGGTCCTCTTTTTGTCAGATCTAATGGTCAATTTTTTACACGTCGT
CAACTAGTTACCCTTTTGAATTTGGCCCTTCCCAATGTACCCAACATCAA
TACTCACAGTTTTCGAATCGGTGGAGCCTCTGCCGCGCTGTCATCGGGTG
CTTCAGACTCAATGATCCGCTCACTAGGACGTTATTTACGTTATCTTAGA
ATTCCAGACAATGATATACACCATTTTCAATCCCGCATAGCATCATTAAC
ACTTACCTCTACTATTTGGGACCCAGATAAATGGTAATGTTTTACCATCA
ACAATAATTGTGTTtagttttctctcttttttcctTTTATCCGTTGTTTT
TACTATGTTGTTGTTTTGCATTTGGGGTGACTTTGGGTGTGTTGGCTTAC
CTTCGGTAACCTAAGGGCCTTCTTACTTTGCTAGTGTCATTGTCCTGGCT
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039616XLOC_039616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063226-exon-scaffold_384-1491911889:209165..209716TCONS_00063226-exon-scaffold_384-1491911889:209165..209716Clytia hemisphaericaexon
TCONS_00063226-exon-scaffold_384-1510915933:209165..209716TCONS_00063226-exon-scaffold_384-1510915933:209165..209716Clytia hemisphaericaexon
TCONS_00063226-exon-scaffold_384-1575043694:209165..209716TCONS_00063226-exon-scaffold_384-1575043694:209165..209716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:209165..209716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.10301	2.62247	2.6936	2.86442	17.0173	11.7939	15.9576	20.9151	3.04504	9.75771	7.43294	4.51497	8.79888	9.04762	7.97007	15.2706	12.0885	9.62565	6.71383	9.08388	10.9532	9.07418	6.38307	7.81926	6.10787	10.5058	14.8003	14.2981	8.70697	9.41594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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