TCONS_00063223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063223
Unique NameTCONS_00063223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063223 ID=TCONS_00063223|Name=TCONS_00063223|organism=Clytia hemisphaerica|type=transcript|length=546bp
ACTCCACTTGGAAGGCAAATTATTCCACTGCTTAGTGCCCATTTAATATT
GGCAGTTACTCTGGAGACCACGAACACCATCGTTCCCAAATATTACTACT
AATTCAGAGTCGTGCATTCTCATAGGTCTCCCTCGCTGGTTACATTTCTT
AGGGTCGCAAGATTTGTCATAGCAGTTTAGATGTTTAAAGATCTCGATCA
TGTCACTTACCTCGCGTCTGTAATTTAGACTAATTATTCCGATTCATGCA
GTCGACTTTTATAGCTCAGCCATCCACATGTTTCATCTGTTTTAGATGCG
CGTCGCTGAACGCTTTCTATCAATCTCGCATGTTTCTCAGTTACCCTGGG
CGTATCTCTTTCAATCTTTTGTTACTGCCTCTccgggggcactcatatgg
tccgacccacggtatgtgccgcccttaagggtaggtccTTTGAGACCCTT
GAAATGCagtgtaagggtgtacttttgatagattacACTACACGGGTCTT
CTTCATACGCTTTGTGTTTGGGGATCGCTGAACTGCAAATCtgaca
Run BLAST on NCBI

transcript from alignment at scaffold_384:159992..160537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063223 ID=TCONS_00063223|Name=TCONS_00063223|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_384:159992..160537 (Clytia hemisphaerica)
tgtcaGATTTGCAGTTCAGCGATCCCCAAACACAAAGCGTATGAAGAAGA
CCCGTGTAGTgtaatctatcaaaagtacacccttacactGCATTTCAAGG
GTCTCAAAggacctacccttaagggcggcacataccgtgggtcggaccat
atgagtgcccccggAGAGGCAGTAACAAAAGATTGAAAGAGATACGCCCA
GGGTAACTGAGAAACATGCGAGATTGATAGAAAGCGTTCAGCGACGCGCA
TCTAAAACAGATGAAACATGTGGATGGCTGAGCTATAAAAGTCGACTGCA
TGAATCGGAATAATTAGTCTAAATTACAGACGCGAGGTAAGTGACATGAT
CGAGATCTTTAAACATCTAAACTGCTATGACAAATCTTGCGACCCTAAGA
AATGTAACCAGCGAGGGAGACCTATGAGAATGCACGACTCTGAATTAGTA
GTAATATTTGGGAACGATGGTGTTCGTGGTCTCCAGAGTAACTGCCAATA
TTAAATGGGCACTAAGCAGTGGAATAATTTGCCTTCCAAGTGGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039613XLOC_039613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063223-exon-scaffold_384-1491911889:159992..160537TCONS_00063223-exon-scaffold_384-1491911889:159992..160537Clytia hemisphaericaexon
TCONS_00063223-exon-scaffold_384-1510915933:159992..160537TCONS_00063223-exon-scaffold_384-1510915933:159992..160537Clytia hemisphaericaexon
TCONS_00063223-exon-scaffold_384-1575043694:159992..160537TCONS_00063223-exon-scaffold_384-1575043694:159992..160537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:159992..160537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.24332	1.00876	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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