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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063220 ID=TCONS_00063220|Name=TCONS_00063220|organism=Clytia hemisphaerica|type=transcript|length=2433bp
TTAGATTACTCAAAAATCATTATGAATGAACATCCGAAGAAAACTAATTT
TGTTTTGGTTGGGTCCTTAATAGTAATATTTGTAATTATTAGTAGTGAAA
TAACCTTCTACATAGACTGGCCTAACGTTCACAAAGGCATCCCAAACGTT
AGAAGACAAAGCTCGGTCACGGCAAAATGGAGCAACGATACGATAAATTT
AGATTTGTTTCTGAAGCAGATGTCACGTGctaaaagatttgaaagaaatc
CCGAGTTTAGTGACGTCATGGAAAACATTGTCACACGATTGAGTCAGATC
AATGATGGTCACCTTACAAAGAACAATCTAAGTAATAACGTCACAATCAT
ATTAAACGGTGTCAATGAGATTTCAAACATCGAAACTTTATTAAACGACA
TTGAAACCCAACCTTCTTGGAGTAAATCCGTCAATATTCTCATTGGTTTG
AACGAAACCAGCTACAAAAGACATTCAAAAAGATTGAGCAGAATTCAAAG
TTCTCTACCCAATTTAAAATGGGTTCTTGTAAAAACTGATCAAACCGATT
CAATAGCTAAAACTTTATCAAACATTGCTACCAAATGCAATACGAAATAT
GTTATGTTAACCCGAAGATTAACGAAAATCCATAACAAGTTTGACATCAA
TCACTTTGTGGTTCCTTTAAGGAAAGGATCCAGCGATGTTATTTCCGGAT
CGGTGTTATATCCAGATGGTCGCTGGAGATCCGGATGTTACCAATCAAAA
TTGATTTGGAGTCAATACAAAATTGAATTCGGTTTCGATATTAcgaatca
acaacaacaaattatGTGTGATTATTTTGATGGCCCTTTTGCGATGGATA
GAGACGTTCTTTTGGGTTATTTAGAAGCAAAGATTAAAACCAAATGCCAA
GATGTGTTATTTTATCCAGAGATCATATTTACAATGACTAAGCaattaaa
aattataaagtcACACCTTTCCAGTGTATTCTATATGGAGCAATggcaag
attttgaaaatcttactCGCAAAGATTGGCTTGATTTTGCGATAAGAAAC
GATATCTCTGAATTCTACGATGGCGATCTTGATAAACATTATGAATTTAC
TAATATTGAAGCTAAGGTGAAATGTCAGAAAACAAACAAGAAAAGTAAAT
CATTGCTTGAGCAAAGAGCTTGTATGAGGGACCTACATTTCATGCTAATC
GACACATTTAAGCTCTTTGATAATCTAGGCTACCATTACAATAGCGAGGA
CGGTTCAGGTCTGGCGGCCGTCAAGCTTCATGATACTCTGCCATGGGATA
TAGACCAAGACTTTTTGTTCCGAAGTCAAAATTTCACGTCTCTAGTACAA
CACGAGTCGACATGGAAAAAACTCGGAATGTCATTTGGTAAACAGCTCAA
TGACCCATGCGTGAAAGATGTAAAtaggtttaaaaaattttcttgtggCT
ATATAGGAATTCACAAAGGGAAATGGAAACTCGAAGCTTGGGGAGTAACC
ATATTCCCATACGACATATACAAGAATCCGAACCAAATATCGTATATCGt
tcgaattttgaaatatcCATTTCCGAGCAGTCGAATCAAAGGAATTAATA
CAATACTGCGAATGGGAGATTATTGGTCAGCTTTTAGACCAAATCCAGGG
CTATTTGCACGTGGGCGGTATGGGCTTGATATCCTAAAACATTCCCCACA
TTGGAGACAACAAGGATCATCTACGAGCTGGATGATGTACAAACCTAAAC
CGAAATTTGAAGCTTGTACAAATGAAGGACACCATTTATGCATGGATCAA
TATTTGGCTGATGGGAATATTCAATTTCAACGACCGTGGGCTTAATTGGA
TATTCAAGTTTACAAAACTGTTCAAATTATGAGTGAAAGCCTTCCTCGAA
TAACTATTAATTTTATATATACGTTGTATCTTACAAGTGTTAACTAGGAT
CATATTTTtgtcactaaaatatttattaattGTTTTgtcttcatttattt
ttttgaattccaTTTCTTGCCTCGAAGAAGTAGTGATTTTCAGAAGTTTC
AGTTTTTTGGTCTTTTGCGGAAAAAGGGTGTCTGTAACCTCTATTTTGGT
GTCGGAATCGTATTGTTTTGTTCGAAGTTgaaatatattgttttttttat
gccACGATATAAATTCAATAATTGTTCTATTGGCCGAAGAACAACTACGG
TATAGGAAATGACATTTTCGAGATTTCGACCGTTTTTTACCTAGTCAGTG
AGAGGCCAATGTGGCCaatgttatgtttttatttgtcTTGCCCAGGGCAG
GGCAATCGATTCAAAACCaaccatacgtgcggcccaaaattaggcacTAG
AAATCGGACCATTAGAGAAAGTTtagcaaaatttgagcaaattttagcga
gatttcccttacagtgcattttcttgaaaggca Run BLAST on NCBI protein sequence of TCONS_00063220-protein >TCONS_00063220-protein ID=TCONS_00063220-protein|Name=TCONS_00063220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=614bp
LDYSKIIMNEHPKKTNFVLVGSLIVIFVIISSEITFYIDWPNVHKGIPNV
RRQSSVTAKWSNDTINLDLFLKQMSRAKRFERNPEFSDVMENIVTRLSQI
NDGHLTKNNLSNNVTIILNGVNEISNIETLLNDIETQPSWSKSVNILIGL
NETSYKRHSKRLSRIQSSLPNLKWVLVKTDQTDSIAKTLSNIATKCNTKY
VMLTRRLTKIHNKFDINHFVVPLRKGSSDVISGSVLYPDGRWRSGCYQSK
LIWSQYKIEFGFDITNQQQQIMCDYFDGPFAMDRDVLLGYLEAKIKTKCQ
DVLFYPEIIFTMTKQLKIIKSHLSSVFYMEQWQDFENLTRKDWLDFAIRN
DISEFYDGDLDKHYEFTNIEAKVKCQKTNKKSKSLLEQRACMRDLHFMLI
DTFKLFDNLGYHYNSEDGSGLAAVKLHDTLPWDIDQDFLFRSQNFTSLVQ
HESTWKKLGMSFGKQLNDPCVKDVNRFKKFSCGYIGIHKGKWKLEAWGVT
IFPYDIYKNPNQISYIVRILKYPFPSSRIKGINTILRMGDYWSAFRPNPG
LFARGRYGLDILKHSPHWRQQGSSTSWMMYKPKPKFEACTNEGHHLCMDQ
YLADGNIQFQRPWA Run BLAST on NCBI transcript from alignment at scaffold_384:151158..153590 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063220 ID=TCONS_00063220|Name=TCONS_00063220|organism=Clytia hemisphaerica|type=transcript|length=2433bp|location=Sequence derived from alignment at scaffold_384:151158..153590 (Clytia hemisphaerica)
tgcctttcaagaaaatgcactgtaagggaaatctcgctaaaatttgctca
aattttgctaAACTTTCTCTAATGGTCCGATTTCTAgtgcctaattttgg
gccgcacgtatggttGGTTTTGAATCGATTGCCCTGCCCTGGGCAAgaca
aataaaaacataacattGGCCACATTGGCCTCTCACTGACTAGGTAAAAA
ACGGTCGAAATCTCGAAAATGTCATTTCCTATACCGTAGTTGTTCTTCGG
CCAATAGAACAATTATTGAATTTATATCGTggcataaaaaaaacaatata
tttcAACTTCGAACAAAACAATACGATTCCGACACCAAAATAGAGGTTAC
AGACACCCTTTTTCCGCAAAAGACCAAAAAACTGAAACTTCTGAAAATCA
CTACTTCTTCGAGGCAAGAAAtggaattcaaaaaaataaatgaagacAAA
ACaattaataaatattttagtgacaAAAATATGATCCTAGTTAACACTTG
TAAGATACAACGTATATATAAAATTAATAGTTATTCGAGGAAGGCTTTCA
CTCATAATTTGAACAGTTTTGTAAACTTGAATATCCAATTAAGCCCACGG
TCGTTGAAATTGAATATTCCCATCAGCCAAATATTGATCCATGCATAAAT
GGTGTCCTTCATTTGTACAAGCTTCAAATTTCGGTTTAGGTTTGTACATC
ATCCAGCTCGTAGATGATCCTTGTTGTCTCCAATGTGGGGAATGTTTTAG
GATATCAAGCCCATACCGCCCACGTGCAAATAGCCCTGGATTTGGTCTAA
AAGCTGACCAATAATCTCCCATTCGCAGTATTGTATTAATTCCTTTGATT
CGACTGCTCGGAAATGgatatttcaaaattcgaaCGATATACGATATTTG
GTTCGGATTCTTGTATATGTCGTATGGGAATATGGTTACTCCCCAAGCTT
CGAGTTTCCATTTCCCTTTGTGAATTCCTATATAGccacaagaaaatttt
ttaaacctaTTTACATCTTTCACGCATGGGTCATTGAGCTGTTTACCAAA
TGACATTCCGAGTTTTTTCCATGTCGACTCGTGTTGTACTAGAGACGTGA
AATTTTGACTTCGGAACAAAAAGTCTTGGTCTATATCCCATGGCAGAGTA
TCATGAAGCTTGACGGCCGCCAGACCTGAACCGTCCTCGCTATTGTAATG
GTAGCCTAGATTATCAAAGAGCTTAAATGTGTCGATTAGCATGAAATGTA
GGTCCCTCATACAAGCTCTTTGCTCAAGCAATGATTTACTTTTCTTGTTT
GTTTTCTGACATTTCACCTTAGCTTCAATATTAGTAAATTCATAATGTTT
ATCAAGATCGCCATCGTAGAATTCAGAGATATCGTTTCTTATCGCAAAAT
CAAGCCAATCTTTGCGagtaagattttcaaaatcttgccATTGCTCCATA
TAGAATACACTGGAAAGGTGTgactttataatttttaattGCTTAGTCAT
TGTAAATATGATCTCTGGATAAAATAACACATCTTGGCATTTGGTTTTAA
TCTTTGCTTCTAAATAACCCAAAAGAACGTCTCTATCCATCGCAAAAGGG
CCATCAAAATAATCACACataatttgttgttgttgattcgTAATATCGAA
ACCGAATTCAATTTTGTATTGACTCCAAATCAATTTTGATTGGTAACATC
CGGATCTCCAGCGACCATCTGGATATAACACCGATCCGGAAATAACATCG
CTGGATCCTTTCCTTAAAGGAACCACAAAGTGATTGATGTCAAACTTGTT
ATGGATTTTCGTTAATCTTCGGGTTAACATAACATATTTCGTATTGCATT
TGGTAGCAATGTTTGATAAAGTTTTAGCTATTGAATCGGTTTGATCAGTT
TTTACAAGAACCCATTTTAAATTGGGTAGAGAACTTTGAATTCTGCTCAA
TCTTTTTGAATGTCTTTTGTAGCTGGTTTCGTTCAAACCAATGAGAATAT
TGACGGATTTACTCCAAGAAGGTTGGGTTTCAATGTCGTTTAATAAAGTT
TCGATGTTTGAAATCTCATTGACACCGTTTAATATGATTGTGACGTTATT
ACTTAGATTGTTCTTTGTAAGGTGACCATCATTGATCTGACTCAATCGTG
TGACAATGTTTTCCATGACGTCACTAAACTCGGgatttctttcaaatctt
ttagCACGTGACATCTGCTTCAGAAACAAATCTAAATTTATCGTATCGTT
GCTCCATTTTGCCGTGACCGAGCTTTGTCTTCTAACGTTTGGGATGCCTT
TGTGAACGTTAGGCCAGTCTATGTAGAAGGTTATTTCACTACTAATAATT
ACAAATATTACTATTAAGGACCCAACCAAAACAAAATTAGTTTTCTTCGG
ATGTTCATTCATAATGATTTTTGAGTAATCTAA Coding sequence (CDS) from alignment at scaffold_384:151158..153590 >TCONS_00063220 ID=TCONS_00063220|Name=TCONS_00063220|organism=Clytia hemisphaerica|type=CDS|length=1845bp|location=Sequence derived from alignment at scaffold_384:151158..153590 (Clytia hemisphaerica)
TTAAGCCCACGGTCGTTGAAATTGAATATTCCCATCAGCCAAATATTGAT
CCATGCATAAATGGTGTCCTTCATTTGTACAAGCTTCAAATTTCGGTTTA
GGTTTGTACATCATCCAGCTCGTAGATGATCCTTGTTGTCTCCAATGTGG
GGAATGTTTTAGGATATCAAGCCCATACCGCCCACGTGCAAATAGCCCTG
GATTTGGTCTAAAAGCTGACCAATAATCTCCCATTCGCAGTATTGTATTA
ATTCCTTTGATTCGACTGCTCGGAAATGgatatttcaaaattcgaaCGAT
ATACGATATTTGGTTCGGATTCTTGTATATGTCGTATGGGAATATGGTTA
CTCCCCAAGCTTCGAGTTTCCATTTCCCTTTGTGAATTCCTATATAGcca
caagaaaattttttaaacctaTTTACATCTTTCACGCATGGGTCATTGAG
CTGTTTACCAAATGACATTCCGAGTTTTTTCCATGTCGACTCGTGTTGTA
CTAGAGACGTGAAATTTTGACTTCGGAACAAAAAGTCTTGGTCTATATCC
CATGGCAGAGTATCATGAAGCTTGACGGCCGCCAGACCTGAACCGTCCTC
GCTATTGTAATGGTAGCCTAGATTATCAAAGAGCTTAAATGTGTCGATTA
GCATGAAATGTAGGTCCCTCATACAAGCTCTTTGCTCAAGCAATGATTTA
CTTTTCTTGTTTGTTTTCTGACATTTCACCTTAGCTTCAATATTAGTAAA
TTCATAATGTTTATCAAGATCGCCATCGTAGAATTCAGAGATATCGTTTC
TTATCGCAAAATCAAGCCAATCTTTGCGagtaagattttcaaaatcttgc
cATTGCTCCATATAGAATACACTGGAAAGGTGTgactttataatttttaa
ttGCTTAGTCATTGTAAATATGATCTCTGGATAAAATAACACATCTTGGC
ATTTGGTTTTAATCTTTGCTTCTAAATAACCCAAAAGAACGTCTCTATCC
ATCGCAAAAGGGCCATCAAAATAATCACACataatttgttgttgttgatt
cgTAATATCGAAACCGAATTCAATTTTGTATTGACTCCAAATCAATTTTG
ATTGGTAACATCCGGATCTCCAGCGACCATCTGGATATAACACCGATCCG
GAAATAACATCGCTGGATCCTTTCCTTAAAGGAACCACAAAGTGATTGAT
GTCAAACTTGTTATGGATTTTCGTTAATCTTCGGGTTAACATAACATATT
TCGTATTGCATTTGGTAGCAATGTTTGATAAAGTTTTAGCTATTGAATCG
GTTTGATCAGTTTTTACAAGAACCCATTTTAAATTGGGTAGAGAACTTTG
AATTCTGCTCAATCTTTTTGAATGTCTTTTGTAGCTGGTTTCGTTCAAAC
CAATGAGAATATTGACGGATTTACTCCAAGAAGGTTGGGTTTCAATGTCG
TTTAATAAAGTTTCGATGTTTGAAATCTCATTGACACCGTTTAATATGAT
TGTGACGTTATTACTTAGATTGTTCTTTGTAAGGTGACCATCATTGATCT
GACTCAATCGTGTGACAATGTTTTCCATGACGTCACTAAACTCGGgattt
ctttcaaatcttttagCACGTGACATCTGCTTCAGAAACAAATCTAAATT
TATCGTATCGTTGCTCCATTTTGCCGTGACCGAGCTTTGTCTTCTAACGT
TTGGGATGCCTTTGTGAACGTTAGGCCAGTCTATGTAGAAGGTTATTTCA
CTACTAATAATTACAAATATTACTATTAAGGACCCAACCAAAACAAAATT
AGTTTTCTTCGGATGTTCATTCATAATGATTTTTGAGTAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063220-exon-scaffold_384-1491911889:151158..153590 | TCONS_00063220-exon-scaffold_384-1491911889:151158..153590 | Clytia hemisphaerica | exon |
| TCONS_00063220-exon-scaffold_384-1510915933:151158..153590 | TCONS_00063220-exon-scaffold_384-1510915933:151158..153590 | Clytia hemisphaerica | exon |
| TCONS_00063220-exon-scaffold_384-1575043694:151158..153590 | TCONS_00063220-exon-scaffold_384-1575043694:151158..153590 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_384 | supercontig | scaffold_384:151158..153590 . |
Blast
The following BLAST results are available for this feature:
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