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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063216 ID=TCONS_00063216|Name=TCONS_00063216|organism=Clytia hemisphaerica|type=transcript|length=2902bp
GTCGTTGAAAAGCCATCCTTCGTTAAAGAGTCTTTGATTGCTAAAAGGTT
GTTCGTCAATGAAGATCTGTCACAAGTATTGTTCGCAGAGCCAATAAATG
ATGTTCCCATAGTTTCGTCTCGCGTCGTTGTAGAGCCAATGCACACTGTC
ATCGTGGAGCCAATTCAAGTTGCTGTTATAGAGTCGATTCCCGTGGTTGA
AGAGCTGATTGAAGTTGTAGGCGAGCTGAAACGTGCAGTTATCGTCGAGC
CGTTGCACACTATTGTCGTGGAACCAATCCGCATGGAATGTTTCAGCCTT
GTCATTGAATCAAACTTGTCATTTGTTAAAGAACCGTATTTTCCAGCTGG
TTTGGAGGTAACGCAACGTGAACCTGTTATCGAATTGAACGATTTCGAAA
TCCCCGAATGTTCAATTGTTCATGATATGACTGAAAAGTTGCTTTTGATA
CTTGTTTTGCAATTAGCCAATAAATGGAAAAGTGTTCAGATGAACTTTTA
TGGCCTTTGTGATTTGGATTTACGGTATCGAACATTGAGATTATTTGGTT
TTCTGATTTCCAGATTTTGGTCAAGCAATATGTCACTATACTTGACGGTG
GGGAGTGTAACTACCTTTTAGAGGCAGTTTAAATTTGTGTtatgttttat
tgttttgtaaacTAGCTCATTATCGTTTTATGTCACTCTCCTTCGATATT
GCATCTTTGGTGTGTTGGTCTTCTCCTGTGTTTGTACAGTTAAGTACTTT
TATTATAGTAATTATCCTTTGTATATAGTATTCTCAAATGTATTTGTCAT
GTCCCTAGGCTATTGAGCTAGTGTGTCAGTAGAGAGCCGTTGCATGTAGA
GTCGTTTCATATTGATGATTCATTTGTCGTTGAAAAGTCATCCTTCGTTA
AAGAGTCTTTGATTGCTAAAAGGTTGTTCGTCAATGAAGATCTGTCACAA
GTATTGTTCGCAGAGCCAATAAGTGATGTTCCCATAGTTTCGTCTCGCGT
CGTTATAGAGCCAATGCATATTGTCATCGTGGAGCCAATTCAAGTTGCTG
TTATAGAGTCGATTCCCGTGGTTGAAGAGCTGATTGAAGTTGTAGTCGAG
CTGAAACGTGCAGTTATCGTCGAGCCGTTGCACACTATTGTCGTGGAACC
AATCCGCATGGAATGTTTCAGCCTTGTCATTGAATCAAACTTGTCATTTG
TTAAAGAACCGTATTTTCCAGCTGGTTTGGAGGTAACGCAACGTGAACCT
GTTATCGAATTGAACGATTCCAAAATCCACGAATGTTCAATTGTTCATGA
TATGATTGAAAAGTTGTTATTGATACTTGTTTTGCAATTAGCCAATAAAT
GGAAAAGTGTTCAGATGAACTTTTATGGCCTTTGTGATTTGGATTTACGG
TATGGAACATTGAGATTATTTGGTTTTCTGATTTCCAGATTTTGGTCAAG
CAATATGTCACTATACTTGACGGTGGGGAGTGTAACTACCTTTTAGAGGC
AGTTTAAATTTGTGTtatgttttattgttttgtaaattagTTCATTATCC
TTAAGTACTTTTATTATAGTAATTATCCTTTGTATATAGTATTCTCAAAT
GTATTTGTCATGTCCCTAGGCTATTGAGCCAGAATTTGTAAATGTATAAA
ATGTGTTGTGATATTTGTAGAAGCTTGTGTAGTGTTTATGTGACGTGATG
TGATGTAGTGTTGTGCCACAGTGTTTTAGTAAGTTTATTTCTTGTACata
ttctattctattctatttTGCTATGTATAGCTTATCTGTCTATGTTACCT
ATTGACTTGTGTTTAGAATCTACTTTGTATTCTTATATTTATGTGTTTAT
CATTGTATTATTTTTAGCGTCTTCGTTATGTCAAAGAAGTCAGTAAACAC
AGCACCTCACTAATGGTCATTCTTTTTTGGGACCGTTAAAGTCACTAATA
AAAGGCTTTGAGAGACATTAAAAAACCCCATTATATTCTGATAATTATAT
GGAGAAAGGTTTACTTCCTAGATTTTTATATTGGTTTTAAAGGAGGGTTT
GCGGTTTTTTAGTTGCAAAGAAGGTTTTCCACTGATTGATACGAGGATGG
CattacaaaaaagttttttcaggaTCTCCAtaaatccatcaaaaatgtta
aaatgagTCCCTGGTTTTAAAGATATAAGTTCAAAGGAATAGGAAGTAAC
CTGGCTAATTATTATTCTCAGAAATGCAAAGATAAGGAGATTATTTAAAA
TCATAAAAGAAGTGCTTATCTCACTGTTAAAGTTAATAAATGAtatgaaa
tttctaaaaaatgtccATCATCAAAGGATATAAGTAAGATTATAAGCCTA
TTAACAGACTTTTAAATTCATTAGAAAGTATGCTTATGGTAATTATATTG
ATAACAGAAAATCCCACCATGTTTCATTAAGAATCTCGATGTCAAAGAGA
GCTGAAGACAATGCAAAATAGTAGCATGTCCTTTTTACAATTAGATAGGA
ACTTGACAAAAAATGCTGCGAATTCTCCATAATGAAACTCTACTGAAAAA
AACTGAAACCTCTGTCGTGTCATCCAAAAATCTGCAACACTGTCCTCCCA
TCTAGACAAGATGTAGCTTACAAATGAAGTCATTTTGATCAGCTTATAAa
caattttgattgaattttcaaTCCTTGTTTGGCTATCACGCCCAGTCTAT
CCAGCGATGTCACAAAATGAGCTGCTTGGATGGAGTGATTCGACGTTCTA
TTTGTCGTTTGTGACGTAAAAGTCGGGAATagtttttgcataaattataa
taatttttaaaaaactttccatgaattttcattatttctccTCTTTGGGG
TTTATTCATTTTATAATTTCTAGTCTGAAAGTAAAAAATGAATAAGAAAT
GT Run BLAST on NCBI protein sequence of TCONS_00063216-protein >TCONS_00063216-protein ID=TCONS_00063216-protein|Name=TCONS_00063216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
VVEKPSFVKESLIAKRLFVNEDLSQVLFAEPINDVPIVSSRVVVEPMHTV
IVEPIQVAVIESIPVVEELIEVVGELKRAVIVEPLHTIVVEPIRMECFSL
VIESNLSFVKEPYFPAGLEVTQREPVIELNDFEIPECSIVHDMTEKLLLI
LVLQLANKWKSVQMNFYGLCDLDLRYRTLRLFGFLISRFWSSNMSLYLTV
GSVTTF Run BLAST on NCBI transcript from alignment at scaffold_384:110060..112961 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063216 ID=TCONS_00063216|Name=TCONS_00063216|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at scaffold_384:110060..112961 (Clytia hemisphaerica)
ACATTTCTTATTCATTTTTTACTTTCAGACTAGAAATTATAAAATGAATA
AACCCCAAAGAggagaaataatgaaaattcatggaaagttttttaaaaat
tattataatttatgcaaaaactATTCCCGACTTTTACGTCACAAACGACA
AATAGAACGTCGAATCACTCCATCCAAGCAGCTCATTTTGTGACATCGCT
GGATAGACTGGGCGTGATAGCCAAACAAGGAttgaaaattcaatcaaaat
tgtTTATAAGCTGATCAAAATGACTTCATTTGTAAGCTACATCTTGTCTA
GATGGGAGGACAGTGTTGCAGATTTTTGGATGACACGACAGAGGTTTCAG
TTTTTTTCAGTAGAGTTTCATTATGGAGAATTCGCAGCATTTTTTGTCAA
GTTCCTATCTAATTGTAAAAAGGACATGCTACTATTTTGCATTGTCTTCA
GCTCTCTTTGACATCGAGATTCTTAATGAAACATGGTGGGATTTTCTGTT
ATCAATATAATTACCATAAGCATACTTTCTAATGAATTTAAAAGTCTGTT
AATAGGCTTATAATCTTACTTATATCCTTTGATGATggacattttttaga
aatttcataTCATTTATTAACTTTAACAGTGAGATAAGCACTTCTTTTAT
GATTTTAAATAATCTCCTTATCTTTGCATTTCTGAGAATAATAATTAGCC
AGGTTACTTCCTATTCCTTTGAACTTATATCTTTAAAACCAGGGActcat
tttaacatttttgatggatttaTGGAGAtcctgaaaaaacttttttgtaa
tGCCATCCTCGTATCAATCAGTGGAAAACCTTCTTTGCAACTAAAAAACC
GCAAACCCTCCTTTAAAACCAATATAAAAATCTAGGAAGTAAACCTTTCT
CCATATAATTATCAGAATATAATGGGGTTTTTTAATGTCTCTCAAAGCCT
TTTATTAGTGACTTTAACGGTCCCAAAAAAGAATGACCATTAGTGAGGTG
CTGTGTTTACTGACTTCTTTGACATAACGAAGACGCTAAAAATAATACAA
TGATAAACACATAAATATAAGAATACAAAGTAGATTCTAAACACAAGTCA
ATAGGTAACATAGACAGATAAGCTATACATAGCAaaatagaatagaatag
aatatGTACAAGAAATAAACTTACTAAAACACTGTGGCACAACACTACAT
CACATCACGTCACATAAACACTACACAAGCTTCTACAAATATCACAACAC
ATTTTATACATTTACAAATTCTGGCTCAATAGCCTAGGGACATGACAAAT
ACATTTGAGAATACTATATACAAAGGATAATTACTATAATAAAAGTACTT
AAGGATAATGAActaatttacaaaacaataaaacataACACAAATTTAAA
CTGCCTCTAAAAGGTAGTTACACTCCCCACCGTCAAGTATAGTGACATAT
TGCTTGACCAAAATCTGGAAATCAGAAAACCAAATAATCTCAATGTTCCA
TACCGTAAATCCAAATCACAAAGGCCATAAAAGTTCATCTGAACACTTTT
CCATTTATTGGCTAATTGCAAAACAAGTATCAATAACAACTTTTCAATCA
TATCATGAACAATTGAACATTCGTGGATTTTGGAATCGTTCAATTCGATA
ACAGGTTCACGTTGCGTTACCTCCAAACCAGCTGGAAAATACGGTTCTTT
AACAAATGACAAGTTTGATTCAATGACAAGGCTGAAACATTCCATGCGGA
TTGGTTCCACGACAATAGTGTGCAACGGCTCGACGATAACTGCACGTTTC
AGCTCGACTACAACTTCAATCAGCTCTTCAACCACGGGAATCGACTCTAT
AACAGCAACTTGAATTGGCTCCACGATGACAATATGCATTGGCTCTATAA
CGACGCGAGACGAAACTATGGGAACATCACTTATTGGCTCTGCGAACAAT
ACTTGTGACAGATCTTCATTGACGAACAACCTTTTAGCAATCAAAGACTC
TTTAACGAAGGATGACTTTTCAACGACAAATGAATCATCAATATGAAACG
ACTCTACATGCAACGGCTCTCTACTGACACACTAGCTCAATAGCCTAGGG
ACATGACAAATACATTTGAGAATACTATATACAAAGGATAATTACTATAA
TAAAAGTACTTAACTGTACAAACACAGGAGAAGACCAACACACCAAAGAT
GCAATATCGAAGGAGAGTGACATAAAACGATAATGAGCTAgtttacaaaa
caataaaacataACACAAATTTAAACTGCCTCTAAAAGGTAGTTACACTC
CCCACCGTCAAGTATAGTGACATATTGCTTGACCAAAATCTGGAAATCAG
AAAACCAAATAATCTCAATGTTCGATACCGTAAATCCAAATCACAAAGGC
CATAAAAGTTCATCTGAACACTTTTCCATTTATTGGCTAATTGCAAAACA
AGTATCAAAAGCAACTTTTCAGTCATATCATGAACAATTGAACATTCGGG
GATTTCGAAATCGTTCAATTCGATAACAGGTTCACGTTGCGTTACCTCCA
AACCAGCTGGAAAATACGGTTCTTTAACAAATGACAAGTTTGATTCAATG
ACAAGGCTGAAACATTCCATGCGGATTGGTTCCACGACAATAGTGTGCAA
CGGCTCGACGATAACTGCACGTTTCAGCTCGCCTACAACTTCAATCAGCT
CTTCAACCACGGGAATCGACTCTATAACAGCAACTTGAATTGGCTCCACG
ATGACAGTGTGCATTGGCTCTACAACGACGCGAGACGAAACTATGGGAAC
ATCATTTATTGGCTCTGCGAACAATACTTGTGACAGATCTTCATTGACGA
ACAACCTTTTAGCAATCAAAGACTCTTTAACGAAGGATGGCTTTTCAACG
AC Coding sequence (CDS) from alignment at scaffold_384:110060..112961 >TCONS_00063216 ID=TCONS_00063216|Name=TCONS_00063216|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_384:110060..112961 (Clytia hemisphaerica)
CTAAAAGGTAGTTACACTCCCCACCGTCAAGTATAGTGACATATTGCTTG
ACCAAAATCTGGAAATCAGAAAACCAAATAATCTCAATGTTCGATACCGT
AAATCCAAATCACAAAGGCCATAAAAGTTCATCTGAACACTTTTCCATTT
ATTGGCTAATTGCAAAACAAGTATCAAAAGCAACTTTTCAGTCATATCAT
GAACAATTGAACATTCGGGGATTTCGAAATCGTTCAATTCGATAACAGGT
TCACGTTGCGTTACCTCCAAACCAGCTGGAAAATACGGTTCTTTAACAAA
TGACAAGTTTGATTCAATGACAAGGCTGAAACATTCCATGCGGATTGGTT
CCACGACAATAGTGTGCAACGGCTCGACGATAACTGCACGTTTCAGCTCG
CCTACAACTTCAATCAGCTCTTCAACCACGGGAATCGACTCTATAACAGC
AACTTGAATTGGCTCCACGATGACAGTGTGCATTGGCTCTACAACGACGC
GAGACGAAACTATGGGAACATCATTTATTGGCTCTGCGAACAATACTTGT
GACAGATCTTCATTGACGAACAACCTTTTAGCAATCAAAGACTCTTTAAC
GAAGGATGGCTTTTCAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063216-exon-scaffold_384-1491911889:110060..112961 | TCONS_00063216-exon-scaffold_384-1491911889:110060..112961 | Clytia hemisphaerica | exon |
| TCONS_00063216-exon-scaffold_384-1510915933:110060..112961 | TCONS_00063216-exon-scaffold_384-1510915933:110060..112961 | Clytia hemisphaerica | exon |
| TCONS_00063216-exon-scaffold_384-1575043694:110060..112961 | TCONS_00063216-exon-scaffold_384-1575043694:110060..112961 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:110060..112961 . |
Blast
The following BLAST results are available for this feature:
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