TCONS_00063201 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063201
Unique Name	TCONS_00063201
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1473

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_384:11564..18615-

transcript sequence

>TCONS_00063201 ID=TCONS_00063201|Name=TCONS_00063201|organism=Clytia hemisphaerica|type=transcript|length=1473bp
TTGTCAAGAGTAATGAGATACGTCTCCAAATATGAAGATTTTTACAATTT
GACAGCATCAGTAATTCGTTATATCAAGCTAGTATGTATGATGTTAATGG
TTGCCCACTGGAATGGTTGCCTTGGTTTCTTAGTACCCATGCTTCAAGAT
TTTCCAGTTGATTCATGGGTAGCATTGAACAATTTACAGGAAGCACATTG
GACTGAGCAATACGGATGGGCGCTATTTAAGGCGTTATCCCATATGCTTT
GTATTGGGTATGGGCGTTTTATACCACGCCTTTTATCCGAAGCATGTATT
ACAATCTTCAGTATGGTAACAGGAGCAACCTTTTACGCCCTTTTTATCGC
CCATTCTATGGCTTATATTCAACAACGCGATTCAGCTCGAAGATTGTATT
CTGAAAAGTTTCAACAAATTGAAGAATATATGCGATACCGTGATTTGCCG
CAAAACGTGCGCGAAAAGATTACAGATTATTATGAACATAAGTACAGTCA
GAAGAGACTTTTTAACGAATTGGAAATCTTAAGCGAAGTCTCCAAGCCTC
TGCGTGACGATATTGTTAACCATAATTGTCGAGATCTGATCGAATGCGTT
CCATTCTTACGGGAAGGTGGTCCTGATTTTATAACTCAAGTTACAAATAG
TCTGACGTTTGATGTTTACTTGGCGGGTGACATCATTATTAAGGAAGGAA
CTTTCGGTGACGAAATGTTCTTCATACGTAACGGAAGCGTTGACGTCATC
GCGAGCGGACAATACGTCACCACGTTGGTAGAAGGAGATTACTTCGGAGA
AATTACAATGCTAACAAGTGCCCGTCGCGTAGCAACCATTACAGCCGTTA
CCGTTTGCGATCTGTTCATTTTAACGGCCGATAATTTGAACAAGACACTT
GAGGAGTTTCCTGAAATGCGAGCCGTTATGGAAAAAGTGGCACTCAATCG
ATTATTGCGATTGCGCGAAAAGCTACCCGAGTGTACCAACACACATTCAG
CGACTgtcgatttaaaaaagaagcctCGGTTCGAGTCTGCTTCATCATGC
ACAACACGTAACATGTCTACCATTATTAACGAAGCAACAGACATTATCTC
AAAATCAACAACAAACATTGCTAACCCAAAAAATAACCAAGTCTCTCCGG
CGCCACATAACTTCCCGGCCGTACCGACGATTAATGTATCCGGATCAAAT
GGGAATATTGCCGTAAACAAAGATACTCCGGATAAGCAGGAAACCGGAGA
ATTAAGTAATACGGAATCGAGCAAGAAGGATCCGCACGTTGTTGTGTAAT
TGGACGAATAGGTTTCTAGTGTTGTTaatgtttatttcattttctaaatt
tatacctttttatctttaataaatttatttttaaatatttttcataaatt
tgactTGAAACACAAAACtttcgataatttttttctaaacttttcaagAT
ATCATAGGGTTACAAAATGGAAC

Run BLAST on NCBI

transcript from alignment at scaffold_384:11564..18615-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063201 ID=TCONS_00063201|Name=TCONS_00063201|organism=Clytia hemisphaerica|type=transcript|length=7052bp|location=Sequence derived from alignment at scaffold_384:11564..18615- (Clytia hemisphaerica)
TTGTCAAGAGTAATGAGATACGTCTCCAAATATGAAGATGTAAGTATGCA
TTGACTTGTACTCAGTCCTCTATTCGTTTTTTTATAAAAATATCCAAAAT
TTTAGGAGCCCTCGGATATTCTTAACTTTTTGAATTTTAAGCCTATTTTC
ACCATTCTGTAAGTATTTTTGGCCATTTTTTCTACAAAATTGGGTGACCC
CGCAAAGCCTTAAAATGTTCTTAACTTGTTCAAAACATTTTATTATAGTT
TTACAATTTGACAGCATCAGTAATTCGTTATATCAAGCTAGTATGTATGA
TGTTAATGGTTGCCCACTGGAATGGTTGCCTTGGTTTCTTAGTACCCATG
CTTCAAGATTTTCCAGTTGATTCATGGGTAGCATTGAACAATTTACAGGT
AGGTGGTGACCATTTTAATGTAATACGTTTTGACGTACTTATAACGTCTA
TAGGGTCCATATAAATAAGAAAGTCTGCAACAGCATTCGGAGGCGAGGGG
CAAATCACTCGAAAAATCGTGTACGAGATTTATGATTTATTTTTGATTTA
TNTTCAGCTATTTTAAATCGTGGTTTTTGATTGATTTAATTAGTTCGTTT
CCCTTCGACAATATCATTCTCTTGATCTCTGGAGGAAATACGGATAGTTA
TGGTCTAGGCGTTAAAAGTGCATTTCGTGGATTCAAATTTTTGCGCTTAG
TCAAACTTTTGAGTTTGTTGAAATTATTGAGATTGTCAAGAGTAATGAGA
TACGTCTCCAAATATGAGGATGTAAGTATGCATTGACTTGTACTCAGTCC
TCTATTCGTTTTTTTATAAAAATATCCAAAATTTTAGGAGCCCTCGGATA
TTCTTAACTTTTTGAATTTTAAGCCTATTTTCACCATTCTGTAAGTATTT
TTGGCCATTTTTTCTACAAAATTGGGTGACCCCGCAAAGCCTTAAAATGT
TCTTAACTTGTTCAAAACATTTTATTATAGTTTTACAATTTGACAGCATC
AGTAATTCGTTATATCAAGCTAGTATGTATGATGTTAATGGTTGCCCACT
GGAATGGTTGCCTTGGTTTCTTAGTACCCATGCTTCAAGATTTTCCAGTT
GATTCATGGGTAGCATTGAACAATTTACAGGTAGGTGGTGACCATTTTAA
TGTAATAACGTCTATAGGGTCCATATAAATAAGAAAGTCTGCAACAGCAT
TCGGAGGCGAGGGGCTAATCACTCGAAAAATCGTGTACGAGATTTATGAT
TTATTTTTGATTTATGATTTATTTCTGATTTATTTTTGATTTATTTTTGA
TTTACAAAATTGTGTACGAGATTTATTTCAGTGATTTTCCCCTTGATCCG
AAGGCTCTACTTTCCGCTAACAGATGCGCCACTTTTTCCCCCTGGATTAC
TCCACTTACTTTTGATCCTTCTCTTAATTGCTGAACATCAAGCAGAGAGG
TATTATTTTTGTATTTAGGCGAGACCAATTTGATTTGTTGTTCGTTAGCA
AAATATGGGTCGGTCGGTCAGTCGGTAAAATAAGAATAAACTTTTCATTT
ATCAGGGTTGGTAAAGTACCGAAAATGTTTTCCAAAAAATATCTGGTTCA
AAAATTCACTTTTTTTATCTTCGATGGAGATCATGATAAAATCTTAGTGT
ATGGAATGCTTGATTTTCTAAATTTTTCAATTTCTTGAATTAATTTTCAG
CTTTCTTCAAATTTGATTCTTACAAAAAACTAGTGTGTAAAATATATTGT
AGTGGATGAAATTCAATATTTTTTTTTTACTTTAGCAAAAATAGGGTCGG
TCGGGCCCGTAGAACAACAAATTAAATTGGTCTCGCCTTACACAGTACAT
GGTCTTTGGTATGACCCCGGTCGGAGATTGACCCGCGACCGCTATGGTCC
ATATAACGTTTCTATGAGTATTGAAACAATGCAGAGGCGCGAAAGTAAAC
AAATTCAGAATTTTTCAGATGCCTTCAAAAAGGTTTCCAAACTGCCTTGT
ATTACCAATTATATGTATGCAACTTATTTCTCTATCTTTAGGAAGCACAT
TGGACTGAGCAATACGGATGGGCGCTATTTAAGGCGTTATCCCATATGCT
TTGTATTGGGTATGGGCGTTTTATACCACGCCTTTTATCCGAAGCATGTA
TTACAATCTTCAGTATGGTAACAGGAGCAACCTTTTACGCCCTTTTTATC
GCCCATTCTATGGCTTATATTCAACAACGCGATTCAGCTCGAAGATTGTA
TTCTGAAAAGGTAATTCCCTCTCTATTTAACTTTCGAGACTTTCGAAATT
CTCAAGACATTTAAGGCCAGTCTCCACTTGCGCGCGCTTCGATCGCGCTT
TTTCGAGCAAAGCTTCCACGCTATTGGTCAAAAGAAAAATGAAGCAACTG
CATTGGCGCGAACTGACGTAACGGTTGAAAAAAGTTGAAATATGTTCAAC
TTTTTATCGAGCGCGCGCTACATTTTTATGACGTAATCTTTTTTCCAAGC
AAAAAGGATTGAAGCCCAAAAGTGCGATCGTAGCGCGCGCAAGTGGAAAC
CGGCCTTTACATATATGAATCGCGAGTTGATGACTATTCAATTATTGCTA
AATTATCATCAGTAAAAAGTGACGGAAGATCGCTTGGTGACGAGTTTTTA
CCGTCTAATTTTTTTGCCGATGTTTGTTTTTGATAGTGGAAAGAAAAAGG
TCTTCACTTTAAAATACGTTAACAATATTATTCTTCGCCACGGCATGACG
TCAGAACTGGGGTATAACAGAACACTTACTAAAGATTAATTATGTGTTTT
CAGTAAACATAATCTTTTAGTGAGTTAAACCATAGTGTTTGTTTTACCAT
CGAAATTATTAAGTCTTATTGGTTGAAAAAGATGTCACATGACTTTCCGT
GGCAAAGAATTCAAATGAAAATGGTACTTTAATGTTTACATTCCTCGTTG
TAAATAATTGCTGTCAAATCCAAGGCGTGAGCTCTAAGAATCCAGTTTTC
ACTTAAGTTTAACTTTAAGTTATTTTTTTTCTTCTTTTTTTCAATAGTTT
CAACAAATTGAAGAATATATGCGATACCGTGATTTGCCGCAAAACGTGCG
CGAAAAGATTACAGATTATTATGAACATAAGTACAGTCAGAAGAGACTTT
TTAACGAATTGGAAATCTTAAGCGAAGTCTCCAAGCCTCTGCGTGACGTA
AGTAATAAACTTTATCTTTCATAGGGAGAATTTTTAACAGGAAGAAATTG
AAAATAAAAGATCCCTGGAATTTTTGGGTACTGAATTCACAGTAAAAAAT
CTATTAAAACTTTTCAACTTTTTGCAAATTATTGCAAAGTTTTCAATTTC
TTCCTGTGTGTCATCCAAACTTTTGACTGTAAAGGAATTCCTGTGTAGCA
GACCCAATGGAAACCTACCTACTGGAAAATTTGACTAAAATTTCAGCCCC
ACTGAGAAATATATATTTTTTTCATTCTCGTTTGTAATTCCATGTAAGAA
ATGGCACTCGCCCATTGAGATCTTGATATTAAATAGGGTTGACGTTTTGG
TTTTTTTAATTATGCAAAAAAGCATTTTAATTTGCAGAGGCGATCCCTTG
TGCAAATGGAAGATTTGATACCATATGGTGGTAATGACTAAACATGAAAA
GTCTTATAAAAACCTATTTTTATGTCCCCTCCCTCGTACATCTCGCATTG
AGTGATTTTTAAAATGTTGGAAAGTTTACGAAATTTTGAACCCGTTCATA
AAACGCGAACCTTGAAAATCCGAACATTTTTAGCTCTTCAGTGTAGGAGG
CTACTTTTTGGATTAAACATATTTCCAATAATCCAAATTTTTCACAATGC
ATACAAGGATAGGTGTGTGGGATCATTTCACTACTATCATTTCAACCTAC
ACTCAGAACCATGAAAACTGTGTTATACTTTTTAATCGGGTTTATTTATT
TTCGCGAGCCAGCATTATGAAATATTTTGCATGTATTTAATTTTGCAACT
GAGCCCGAAATCAGACTTGAAAAAAGGCTTTAAAAGTACAGCCAATTTTC
GCCGGAATTAATCTTATCAGAATACAGTCGAGTCTCCATAACTCGAATCT
TCGAATTATGGTGTAAGGTTTATAAGGGATTGTTAACTGAAGAGACTAAA
AAACTAGAGTTAAGGAGTCATTCGAATTATTGAGACTGCACTGTAGTGAA
ACTCACGCGCGGTATATAATCATAAGCAAATATTCAATAGGTAAAAGTTG
GTTATGTACTTGTTATCATATGACTTCGAGTGCAATACGATACAATATTT
TACGAGTTCAGAGATTTTTCCGTAATATTTTTCCGAGCCTTAACCCGAGG
TGATGTAATATTCAACGAGGCCAAGCCGAGGTATTATGCAATGGCTGTTT
TTAACCTACAGTTATATAATAATTATATTAAATTTTATCTCTACAGGATA
TTGTTAACCATAATTGTCGAGATCTGATCGAATGCGTTCCATTCTTACGG
GAAGGTGGTCCTGATTTTATAACTCAAGTTACAAATAGTCTGACGTTTGA
TGTTTACTTGGCGGGTGACATCATTATTAAGGAAGGAACTTTCGGTGACG
AAATGTTCTTCATACGTAACGGAAGCGTTGACGTCATCGCGAGCGGACAA
TACGTCACCACGTTGGTAGAAGGAGATTACTTCGGAGGTAAAAAGTCTCA
TTATCTTTTTTTACGAGAACAATTTAGTCTCAAAATACCAAAAAATAAGA
ATAATTTAAGAATAATTCTAAATCTGGAATTGCTAAATCTTGAAAAAATG
AAGGGTCAAATCAGTGAGAAAGAATCTAAAATACCTGGATTCTACTACTT
GAAGTTAATAAGAATACAATTTGAAGCTCAAAATACCAAACCAATTAAGA
ACAAAAGAACCTAAACAAAATTTTACTGGGTCTTAAAAACAATTACATTT
CATCGTCTTCATGCTTAACATCGCGTTTGTTGAAAACTATCATATTCGTG
ACATTTTCCATTTTAGAAATTACAATGCTAACAAGTGCCCGTCGCGTAGC
AACCATTACAGCCGTTACCGTTTGCGATCTGTTCATTTTAACGGCCGATA
ATTTGAACAAGACACTTGAGGAGTTTCCTGAAATGCGAGCCGTTATGGAA
AAAGTGGCACTCAATCGATTATTGCGATTGCGCGAAAAGGTATTTCTCAG
TTTGCTTTATGTTACCTTCTTAAGCCAGTATTATCTATTGATTATAAATT
CCCTGGTACAGTAGACTCTGGCTTATTCGAACTTCTATTATTCGTATCTT
TATATAATTCGAACTAATTCACAGTCCCCGTCAAGGAGAAACCCTCTTGA
AATACCTTCTACAGTTCGAACCTCTCTGTATTTCGAACAAATATCATTCC
CCGTTCCAGTTCGAATTAGTGATAGTCAACTGTATATATATAAATAAAGT
TTATTTGCTCCTTTTAATTTTTTTTTATGGTAAACTTCTTACACAATTAG
ACCCTCAAGAGCCAATTACCGTGGCTGATATGGGCATCCCTGCGCCTATC
TTCCGGCGGAGGTTTAAGTTAGGCGGCCGCCTATCTTTTCGGATTTAAGA
TAGGCGGCCGTCTAATTAGTCAATCTTGCTGATCTATTCTGGTCTGTATT
TTTATCATCTCAATTCAGGCGGCCGCCAGTTTTATCATTTCAAATTTCAA
AACAAACAACAAACATGGTAGCCATTTTCCTTTTACTTTGTTTTGAAATT
CCTCTGCCACTTGATACACCATTTTGGTATTTTTGTTTACTTTATTAACA
CGTGCAACAGAAGATAGGCGGCCAACTCAGGCGGCCGCCTAAGATTTAAC
AAGTTAGGCGGCCGCCTGAATTAGAATAGGTGGCCGCCTATCCCAACTCA
GGCGGCCGCCTAAGATTTAGCCAATGCTTAAAGAACTGAACGATATACAC
TCTAATCAATTCATGACGTAATGTTTCTAAATAAGCATCCCGGTTTTTGC
CAGAAGTGGCAAATCTATGCTAGAGAAAAAAGGGTTTTAAATTTGCCACT
TCTAGCAAAAACTGGGCTGATTCCATGGAAAATATTGCATAATGAGGCGA
AAATTAAAAGAATGTAGTGTTTCAGGAATGTGGTTTGAAGGAAAAAAGCT
CTCATGCGGCCGGCCTGCTATTTTTGATAACTTTTAAGATCATTGAAATA
GAACTTTAAAAATAACTTTTATGTACAAACAGTATGAAGTAAACCCTGAA
TATTAATGTATCAACTACTAACGAACAAAACTTTATTAGCGATTAGATTT
AGATTAGATTTACAGGTGGGAATATCTAACCAAAATACGTTTGATANAGA
TTTAGATTAGATTTACAGGTGGGAATATCTAACCAAAATACGTTTGATAG
GTTGATTTTCTTTATGATGAACCGTATAAATGAGCCCAAAGTTTGCGGTC
GCGTCAGAAAAAATTTTTTTTTCACCCGGCCGTTTTCCGGAAACACCACA
TTCTTTTATTTTTACCTGAATACCATAATTGTTTCTCTCTTTTCATCGCA
GCTACCCGAGTGTACCAACACACATTCAGCGACTGTCGATTTAAAAAAGA
AGCCTCGGTTCGAGTCTGCTTCATCATGCACAACACGTAACATGTCTACC
ATTATTAACGAAGCAACAGACATTATCTCAAAATCAACAACAAACATTGC
TAACCCAAAAAATAACCAAGTCTCTCCGGCGCCACATAACTTCCCGGCCG
TACCGACGATTAATGTATCCGGATCAAATGGGAATATTGCCGTAAACAAA
GATACTCCGGATAAGCAGGAAACCGGAGAATTAAGTAATACGGAATCGAG
CAAGAAGGATCCGCACGTTGTTGTGTAATTGGACGAATAGGTTTCTAGTG
TTGTTAATGTTTATTTCATTTTCTAAATTTATACCTTTTTATCTTTAATA
AATTTATTTTTAAATATTTTTCATAAATTTGACTTGAAACACAAAACTTT
CGATAATTTTTTTCTAAACTTTTCAAGATATCATAGGGTTACAAAATGGA
AC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039598	XLOC_039598	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_384	supercontig	scaffold_384:11564..18615 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409601	0.549656	0.282698	0.232838	0.720293	0.575056	0.466717	0.735767	0.994543	4.99577	0.982561	0.861004	2.07806	1.54394	1.19016	0.841274	0.643449	0.721437	2.04382	1.4963	0.49091	0.438087	0.941391	0.506583	1.37624	1.94094	0.445859	0.362489	0.807408	0.829496

Blast

[Close]

BLAST of TCONS_00063201 vs. Swiss-Prot (Human)
Match: HCN4 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Homo sapiens GN=HCN4 PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 1.430e-110
Identity = 158/322 (49.07%), Postives = 226/322 (70.19%), Query Frame = 1

Query:   19 YVSKYEDF----YNLTASVIRYIKLVCMMLMVAHWNGCLGFLVPMLQDFPVDSWVALNNLQEAHWTEQYGWALFKALSHMLCIGYGRFIPRLLSEACITIFSMVTGATFYALFIAHSMAYIQQRDSARRLYSEKFQQIEEYMRYRDLPQNVREKITDYYEHKYSQKRLFNELEILSEVSKPLRDDIVNHNCRDLIECVPFLREGGPDFITQVTNSLTFDVYLAGDIIIKEGTFGDEMFFIRNGSVDVIASGQYVTTLVEGDYFGEITMLTSARRVATITAVTVCDLFILTADNLNKTLEEFPEMRAVMEKVALNRLLRLREK 972
            Y+ ++E+     Y+L ++V+R + L+ MML++ HW+GCL FLVPMLQDFP D WV++NN+    W +QY +ALFKA+SHMLCIGYGR  P  +S+  +T+ SM+ GAT YA+FI H+ A IQ  DS+RR Y EK++Q+E+YM +  LP + R++I DYYEH+Y Q ++F+E  IL E+S+PLR++I+N NCR L+  +P      P+F+T +   L F+V+  GD II+EGT G +M+FI++G V V+  G   T L +G YFGEI +LT  RR A++ A T C L+ L+ DN N+ LEE+P MR   E VAL+RL R+ +K
Sbjct:  397 YIHQWEEIFHMTYDLASAVVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFPDDCWVSINNMVNNSWGKQYSYALFKAMSHMLCIGYGRQAPVGMSDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKK 717

The following BLAST results are available for this feature:

BLAST of TCONS_00063201 vs. Swiss-Prot (Human)

BLAST of TCONS_00063201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HCN4	1.430e-110	49.07	Potassium/sodium hyperpolarization-activated cycli...	[more]

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TCONS_00063201 (transcript) - C. hemisphaerica