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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063200 ID=TCONS_00063200|Name=TCONS_00063200|organism=Clytia hemisphaerica|type=transcript|length=1575bp
ATTTGAAACTACAGTTATTGCTATGCTATAAAAACTTTATGAAAGATGGT
CAGTTAAAACTTCAATATAAACCAGTTTCAAAACAGGCTGGTTCAACAGA
TTGTGGTATTTTCGTCATTGCTTATGCTTTCGATATTGCCAGTGGGAGAT
CCCCTGAAAAAATCATTTATAACCAGTTTACCATGAGAGCACATCTTTCG
ACTTGCATTAATAGAAGGtctttttcacattttccaGTTGTTCTCAATGA
TAATTCAGATACTAAAATTTGTTCAGTATTTATGATCAAGTAGACCAAAA
CATTTAAGAAAACACGATNGGGGGGTGGAATGGGTTCCCTGATTCCGTGC
GTCAATTTGTACCTAAATTTCCGTCCGTAAATTCCGACACAGCTTTTTAA
GAACGTCTTTACAATGTGTTCTCCTCGAATTCAAGAGTTTTCGATTTGTT
CCCCTTTTCTATCTCTTGCTCTCAGAATTTTACGCTGAAAGTAAGCCTga
atttaaagcccgaagggctagaagtgaaTCTCAAGTCTTTCCCGGACAAA
ACCAAGTGATGCTTCAACAATTTTCACCAAATAACGGATGAAGAATTGAA
TAGAAATGATATTTTTTCCGAActgtcatattttcaaaatctagCGGTAA
ACGCTTTTTTCAATCTTTGCATTTGTATGATAACCATGTGGGTCGCGCAA
CTTTGGAAGATTCgtttctagccttcggcttaaTTCATTGTGCCTGAGTG
TGTGTACTctattttgcttttcttttctttaagcTTCTGGCTGTACAATA
CCCGTATGTGGCAAGATTCTATCAGTTATCTTTACTATCGATCATCTGGG
TTCTCTGGCAACTGGAGTGGGAATAAACATATAACGACCGACTATCGAGA
GCACCTTTAACTTTCCTCCGATATTAGAACGCTGGAGATTTGctacaaag
ttcaaaaatcgcTTTCAANCTTTACTTTTCCTGGGTTGGTGTACAGTTCG
ATTTTTTTGTAGATTGGTAATGGTTTGGTTTTTCCAGATGGAGTTGcagt
tttgttgtttgttggtgGGTTATAGTTTCAGTGTTGCCAGATGGGGTTCC
ATCATTGCTGTTTGCGGGTGGCTGACATTTTCAGTGCTGCTAGATGGGGA
GTTCCAGCATTGCTGTTTGCGGGTGGGCGATAGTTTCAGTGTTGCCAGAT
GGGGTTCCAGTATTGCTGTTTGTGGGTGGCCGACAATTTCAGTGCTGCTA
GATGGGGCTGGCTTGCAATTTAGTTGTTTGCAGGTGGGTGGGGGTTTCAG
TGCTGCTAGATGGGATTACATTTTTGTTATTTGCGGGTGGCTGACAGTTA
GTTTTTATGGATGAGGTTGCAGTTTTGTTACTGAATGAGCTGGCAACTAT
GGTGTTCCTGAATTGGTTGTGCTGGCAACTATGGTGTTCCTGAATGACCT
GGCAGCTACGCCGTTCCTGAATATATTGACAGTTTTTGTGTTCCGGGCTG
GCATTTTGGtgttacttttcttttgtttgttggTGGTTggattgaaattt
tgattttttgggatGGGTGACGACN Run BLAST on NCBI transcript from alignment at scaffold_384:372912..374655+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063200 ID=TCONS_00063200|Name=TCONS_00063200|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at scaffold_384:372912..374655+ (Clytia hemisphaerica)
ATTTGAAACTACAGTTATTGCTATGCTATAAAAACTTTATGAAAGATGGT
CAGTTAAAACTTCAATATAAACCAGTTTCAAAACAGGCTGGTTCAACAGA
TTGTGGTATTTTCGTCATTGCTTATGCTTTCGATATTGCCAGTGGGAGAT
CCCCTGAAAAAATCATTTATAACCAGTTTACCATGAGAGCACATCTTTCG
ACTTGCATTAATAGAAGGtctttttcacattttccaGTTGTTCTCAATGA
TAATTCAGATACTAAAATTTGTTCAGTATTTATGATCAAGTAGACCAAAA
CATTTAAGAAAACACGATNGGGGGGTGGAATGGGTTCCCTGATTCCGTGC
GTCAATTTGTACCTAAATTTCCGTCCGTAAATTCCGACACAGCTTTTTAA
GAACGTCTTTACAATGTGTTCTCCTCGAATTCAAGAGTTTTCGATTTGTT
CCCCTTTTCTATCTCTTGCTCTCAGAATTTTACGCTGAAAGTAAGCCTga
atttaaagcccgaagggctagaagtgaaTCTCAAGTCTTTCCCGGACAAA
ACCAAGTGATGCTTCAACAATTTTCACCAAATAACGGATGAAGAATTGAA
TAGAAATGATATTTTTTCCGAActgtcatattttcaaaatctagCGGTAA
ACGCTTTTTTCAATCTTTGCATTTGTATGATAACCATGTGGGTCGCGCAA
CTTTGGAAGATTCgtttctagccttcggcttaaTTCATTGTGCCTGAGTG
TGTGTACTctattttgcttttcttttctttaagcTTCTGGCTGTACAATA
CCCGTATGTGGCAAGATTCTATCAGTTATCTTTAGTAAGTggcttttaaa
ataatttttgttagtttttaattcgcgaaattttattGTAAACTTCGCGG
TTTTATGGCATAAAAGTTGGTACGATTTCTCTCTTCTGGAATCTTGAGTG
TAAGTAAAGAAATTGTGGGCAGAATgttgattcattttttttttaccttt
cagCTATCGATCATCTGGGTTCTCTGGCAACTGGAGTGGGAATAAACATA
TAACGACCGACTATCGAGAGCACCTTTAACTTTCCTCCGATATTAGAACG
CTGGAGATTTGctacaaagttcaaaaatcgcTTTCAANCTTTACTTTTCC
TGGGTTGGTGTACAGTTCGATTTTTTTGTAGATTGGTAATGGTTTGGTTT
TTCCAGATGGAGTTGcagttttgttgtttgttggtgGGTTATAGTTTCAG
TGTTGCCAGATGGGGTTCCATCATTGCTGTTTGCGGGTGGCTGACATTTT
CAGTGCTGCTAGATGGGGAGTTCCAGCATTGCTGTTTGCGGGTGGGCGAT
AGTTTCAGTGTTGCCAGATGGGGTTCCAGTATTGCTGTTTGTGGGTGGCC
GACAATTTCAGTGCTGCTAGATGGGGCTGGCTTGCAATTTAGTTGTTTGC
AGGTGGGTGGGGGTTTCAGTGCTGCTAGATGGGATTACATTTTTGTTATT
TGCGGGTGGCTGACAGTTAGTTTTTATGGATGAGGTTGCAGTTTTGTTAC
TGAATGAGCTGGCAACTATGGTGTTCCTGAATTGGTTGTGCTGGCAACTA
TGGTGTTCCTGAATGACCTGGCAGCTACGCCGTTCCTGAATATATTGACA
GTTTTTGTGTTCCGGGCTGGCATTTTGGtgttacttttcttttgtttgtt
ggTGGTTggattgaaattttgattttttgggatGGGTGACGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063200-exon-scaffold_384-1491911889:372912..373745 | TCONS_00063200-exon-scaffold_384-1491911889:372912..373745 | Clytia hemisphaerica | exon |
| TCONS_00063200-exon-scaffold_384-1510915933:372912..373745 | TCONS_00063200-exon-scaffold_384-1510915933:372912..373745 | Clytia hemisphaerica | exon |
| TCONS_00063200-exon-scaffold_384-1575043694:372912..373745 | TCONS_00063200-exon-scaffold_384-1575043694:372912..373745 | Clytia hemisphaerica | exon |
| TCONS_00063200-exon-scaffold_384-1491911889:373915..374655 | TCONS_00063200-exon-scaffold_384-1491911889:373915..374655 | Clytia hemisphaerica | exon |
| TCONS_00063200-exon-scaffold_384-1510915933:373915..374655 | TCONS_00063200-exon-scaffold_384-1510915933:373915..374655 | Clytia hemisphaerica | exon |
| TCONS_00063200-exon-scaffold_384-1575043694:373915..374655 | TCONS_00063200-exon-scaffold_384-1575043694:373915..374655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:372912..374655 + |
Blast
The following BLAST results are available for this feature:
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