TCONS_00063197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063197
Unique NameTCONS_00063197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063197 ID=TCONS_00063197|Name=TCONS_00063197|organism=Clytia hemisphaerica|type=transcript|length=944bp
TGGTATCTGCTTGGATATTACTGGAGATCTCGTTGGTATGTTGATTTGAG
ATTGCCATTTGGACTTAGACCTTCTCCTTTTATTTTCACTACCTTTTCTG
ACGCACTTCAATGGATTTTAGTCGTCAAGTATAACATTACCGCTCATGTA
CATTACCTTGATGATTTTTTCGTTGTTGGCAGAACAAAGGAAGAGTGTCA
GTCTCGTATGGATCTTATGGTTCAGGTCTTTGACTTCTTAGGTGTTCCTA
TAGCAGAGGACAAGTTCGAGGGCCCATCTCAGAGGATTGTGTTCTTGGGG
ATTGAGATAGATTCTGTTGACTTTACCATCCGTCTACCTGCAGACAAAAA
ATTTAGTCTTTCCAATACTGTTGAATGTTGGCTAGTTCGGAAGAAATGCA
CCAAGCTTGATCTTCTTTCTCTCATAGGTTCTCTTTCCTTTGCATGCAAG
GTTATCAAACCTGGTAGAATTTTCCTGCGTCGTCTCATTAACCTTTCTAC
TTCTGTAGCTAAGCTCCATCATCATATCTCTCTCTCTAAATCAGTTCAAG
AAGATCTTATTATGTGGTCTACTTTCCTCCGCTCTTGGAATGGGAAATCC
ATTATGCTGAGCCCCGTTGTGTCTTCCAAATCCCTAGCTTTGTCTACGGA
TGCATCCTTCTTGGGTTTCGGTTCCTTTTTTCAGGGACATTGGTTCTCTG
TTCCCTGGCCTTCCCCTCCTGCTCAGCACAAAGGAAAACCTATTCACGTT
GGATCTCCGTTCCCTGGGCTTCCCCTCCTGCTCAGCACAAAGGAGAACCT
ATTCACATTGCTATCCTAGAGTTGTTTGCCATCTATGCTGCTCTCTCTTG
CTGGAAATATTCGTTCTTTTCCCAACAAGTCTATTTTCACAGACAATGAG
ACCATTGTCTCTGTCTGGGCCTCTGGTACCTCCAAAGATCCTAG
Run BLAST on NCBI

protein sequence of TCONS_00063197-protein

>TCONS_00063197-protein ID=TCONS_00063197-protein|Name=TCONS_00063197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
WYLLGYYWRSRWYVDLRLPFGLRPSPFIFTTFSDALQWILVVKYNITAHV
HYLDDFFVVGRTKEECQSRMDLMVQVFDFLGVPIAEDKFEGPSQRIVFLG
IEIDSVDFTIRLPADKKFSLSNTVECWLVRKKCTKLDLLSLIGSLSFACK
VIKPGRIFLRRLINLSTSVAKLHHHISLSKSVQEDLIMWSTFLRSWNGKS
IMLSPVVSSKSLALSTDASFLGFGSFFQGHWFSVPWPSPPAQHKGKPIHV
GSPFPGLPLLLSTKENLFTLLS
Run BLAST on NCBI

transcript from alignment at scaffold_384:207038..209064+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063197 ID=TCONS_00063197|Name=TCONS_00063197|organism=Clytia hemisphaerica|type=transcript|length=2027bp|location=Sequence derived from alignment at scaffold_384:207038..209064+ (Clytia hemisphaerica)
TGGTATCTGCTTGGATATTACTGGAGATCTCGTTGGTATGTTGATTTGAG
ATTGCCATTTGGACTTAGACCTTCTCCTTTTATTTTCACTACCTTTTCTG
ACGCACTTCAATGGATTTTAGTCGTCAAGTATAACATTACCGCTCATGTA
CATTACCTTGATGATTTTTTCGTTGTTGGCAGAACAAAGGAAGAGTGTCA
GTCTCGTATGGATCTTATGGTTCAGGTCTTTGACTTCTTAGGTGTTCCTA
TAGCAGAGGACAAGTTCGAGGGCCCATCTCAGAGGATTGTGTTCTTGGGG
ATTGAGATAGATTCTGTTGACTTTACCATCCGTCTACCTGCAGACAAAAA
ATTTAGTCTTTCCAATACTGTTGAATGTTGGCTAGTTCGGAAGAAATGCA
CCAAGCTTGATCTTCTTTCTCTCATAGGTTCTCTTTCCTTACATGCAAGG
TTGTCAAACCTGGTAGGATTTTCCTGCTTCTTTCTACTTCTGTAATTAAG
CTCCATCATCATATCTGTCTCCCTAAATCAGTTCAAGAAGATCTTATTAC
TATTTTCCGCCGCTCTTGGAATGGGAAATACATTATGCTGAGCCCCGTCG
TGTCTTCCAAATCCCTAGCTTTGTCTActgtagcctgggaatccaagctc
ataattttagaaaaaacaaaaaatacctcacctcacaaagttctaaaatt
atagagcttggtgcaggtagattagtctgacacaNCTCTCATAGGTTCTC
TTTCCTTTGCATGCAAGGTTATCAAACCTGGTAGAATTTTCCTGCGTCGT
CTCATTAACCTTTCTACTTCTGTAGCTAAGCTCCATCATCATATCTCTCT
CTCTAAATCAGTTCAAGAAGATCTTATTATGTGGTCTACTTTCCTCCGCT
CTTGGAATGGGAAATCCATTATGCTGAGCCCCGTTGTGTCTTCCAAATCC
CTAGCTTTGTCTACGGATGCATCCTTCTTGGGTTTCGGTTCCTTTTTTCA
GGGACATTGGTTCTCTGTTCCCTGGCCTTCCCCTCCTGCTCAGCACAAAG
GAAAACCTATTCACATTGCTATCCTAGAGTTGTTTGCCATCTATGCTGCC
CTCTCTTGCTGGAAACATTCGTTCTTTTCCCAACAAGTCTTGATCTTCAC
AGACAATGAGACCATTGTCTCTGTCTGGGCTTCTGGTACCTCCAAAGATC
CTAGAATCATGTGTATTGTCCGAGCTCTTTTCTTCTTATCTGTAGAAATC
AACGCCTCCTTTACTTTCCAACATGTCGCAGGCAAAGACAACATCTTTTC
TGATCTTCTATCTCGTCTACAGGTCGAGAAATTCAAATCCATCTGCCCAG
CTTCAGATCAATGTCCGTCAGTCATTCACACCTCTATCATGGACCTTTGG
GAAGAGATCTTGTCCATTTCTTGAGACAGTCTACAGCTCCGTCAACACAA
AACACCTACAGATCAGGCATCCGTTCTTACACAACATTCTGTCTTTCGAA
TCAAGCTACTCCTTTTCCAGCGACAGAAGCTTCTTTGTGTTTTTATGCTG
TTTCCTTAGCCAACCGCAAGCTATCGTTCAAGACTATCAAAGTGTATATA
TTTAGGGTCCTTTATCAAAACAATATACTGGGTCAATTTTCTCGCTTATC
AGATTTCAACATCTTATTTCACACTCTTCGCGGAATCCGGCGGTCTCGAC
CACCCAGGTCCCCTATCACAATTCGACACCTTCACATTATCCTGGACTAT
CTCAACCTCTCTGGATTCTCACCTGCCGACAAAGCNTACTGATGCATCCT
TCTTGGGTTTCGGTTCCTTTTTTCAGGGACGTTGGATCTCCGTTCCCTGG
GCTTCCCCTCCTGCTCAGCACAAAGGAGAACCTATTCACATTGCTATCCT
AGAGTTGTTTGCCATCTATGCTGCTCTCTCTTGCTGGAAATATTCGTTCT
TTTCCCAACAAGTCTATTTTCACAGACAATGAGACCATTGTCTCTGTCTG
GGCCTCTGGTACCTCCAAAGATCCTAG

Coding sequence (CDS) from alignment at scaffold_384:207038..209064+

>TCONS_00063197 ID=TCONS_00063197|Name=TCONS_00063197|organism=Clytia hemisphaerica|type=CDS|length=2457bp|location=Sequence derived from alignment at scaffold_384:207038..209064+ (Clytia hemisphaerica)
TGGTATCTGCTTGGATATTACTGGAGATCTCGTTGGTATGTTGATTTGAG
ATTGCCATTTGGACTTAGACCTTCTCCTTTTATTTTCACTACCTTTTCTG
ACGCACTTCAATGGATTTTAGTCGTCAAGTATAACATTACCGCTCATGTA
CATTACCTTGATGATTTTTTCGTTGTTGGCAGAACAAAGGAAGAGTGTCA
GTCTCGTATGGATCTTATGGTTCAGGTCTTTGACTTCTTAGGTGTTCCTA
TAGCAGAGGACAAGTTCGAGGGCCCATCTCAGAGGATTGTGTTCTTGGGG
ATTGAGATAGATTCTGTTGACTTTACCATCCGTCTACCTGCAGACAAAAA
ATTTAGTCTTTCCAATACTGTTGAATGTTGGCTAGTTCGGAAGAAATGCA
CCAAGCTTGATCTTCTTTCTCTCATAGGTTCTCTTTCCTTTGCATGCAAG
GTTATCAAACCTGGTAGAATTTTCCTGCGTCGTCTCATTAACCTTTCTAC
TTCTGTAGCTAAGCTCCATCATCATATCTCTCTCTCTAAATCAGTTCAAG
AAGATCTTATTATGTGGTCTACTTTCCTCCGCTCTTGGAATGGGAAATCC
ATTATGCTGAGCCCCGTTGTGTCTTCCAAATCCCTAGCTTTGTCTACGGA
TGCATCCTTCTTGGGTTTCGGTTCCTTTTTTCAGGGACATTGGTTCTCTG
TTCCCTGGCCTTCCCCTCCTGCTCAGCACAAAGGAAAACCTATTCACGTT
GGATCTCCGTTCCCTGGGCTTCCCCTCCTGCTCAGCACAAAGGAGAACCT
ATTCACATTGCTATCCTAGTGGTATCTGCTTGGATATTACTGGAGATCTC
GTTGGTATGTTGATTTGAGATTGCCATTTGGACTTAGACCTTCTCCTTTT
ATTTTCACTACCTTTTCTGACGCACTTCAATGGATTTTAGTCGTCAAGTA
TAACATTACCGCTCATGTACATTACCTTGATGATTTTTTCGTTGTTGGCA
GAACAAAGGAAGAGTGTCAGTCTCGTATGGATCTTATGGTTCAGGTCTTT
GACTTCTTAGGTGTTCCTATAGCAGAGGACAAGTTCGAGGGCCCATCTCA
GAGGATTGTGTTCTTGGGGATTGAGATAGATTCTGTTGACTTTACCATCC
GTCTACCTGCAGACAAAAAATTTAGTCTTTCCAATACTGTTGAATGTTGG
CTAGTTCGGAAGAAATGCACCAAGCTTGATCTTCTTTCTCTCATAGGTTC
TCTTTCCTTTGCATGCAAGGTTATCAAACCTGGTAGAATTTTCCTGCGTC
GTCTCATTAACCTTTCTACTTCTGTAGCTAAGCTCCATCATCATATCTCT
CTCTCTAAATCAGTTCAAGAAGATCTTATTATGTGGTCTACTTTCCTCCG
CTCTTGGAATGGGAAATCCATTATGCTGAGCCCCGTTGTGTCTTCCAAAT
CCCTAGCTTTGTCTACGGATGCATCCTTCTTGGGTTTCGGTTCCTTTTTT
CAGGGACATTGGTTCTCTGTTCCCTGGCCTTCCCCTCCTGCTCAGCACAA
AGGAAAACCTATTCACGTTGGATCTCCGTTCCCTGGGCTTCCCCTCCTGC
TCAGCACAAAGGAGAACCTATTCACATTGCTATCCTAGTGGTATCTGCTT
GGATATTACTGGAGATCTCGTTGGTATGTTGATTTGAGATTGCCATTTGG
ACTTAGACCTTCTCCTTTTATTTTCACTACCTTTTCTGACGCACTTCAAT
GGATTTTAGTCGTCAAGTATAACATTACCGCTCATGTACATTACCTTGAT
GATTTTTTCGTTGTTGGCAGAACAAAGGAAGAGTGTCAGTCTCGTATGGA
TCTTATGGTTCAGGTCTTTGACTTCTTAGGTGTTCCTATAGCAGAGGACA
AGTTCGAGGGCCCATCTCAGAGGATTGTGTTCTTGGGGATTGAGATAGAT
TCTGTTGACTTTACCATCCGTCTACCTGCAGACAAAAAATTTAGTCTTTC
CAATACTGTTGAATGTTGGCTAGTTCGGAAGAAATGCACCAAGCTTGATC
TTCTTTCTCTCATAGGTTCTCTTTCCTTTGCATGCAAGGTTATCAAACCT
GGTAGAATTTTCCTGCGTCGTCTCATTAACCTTTCTACTTCTGTAGCTAA
GCTCCATCATCATATCTCTCTCTCTAAATCAGTTCAAGAAGATCTTATTA
TGTGGTCTACTTTCCTCCGCTCTTGGAATGGGAAATCCATTATGCTGAGC
CCCGTTGTGTCTTCCAAATCCCTAGCTTTGTCTACGGATGCATCCTTCTT
GGGTTTCGGTTCCTTTTTTCAGGGACATTGGTTCTCTGTTCCCTGGCCTT
CCCCTCCTGCTCAGCACAAAGGAAAACCTATTCACGTTGGATCTCCGTTC
CCTGGGCTTCCCCTCCTGCTCAGCACAAAGGAGAACCTATTCACATTGCT
ATCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039596XLOC_039596Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063197-proteinTCONS_00063197-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063197-exon-scaffold_384-1491911889:207038..207464TCONS_00063197-exon-scaffold_384-1491911889:207038..207464Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1510915933:207038..207464TCONS_00063197-exon-scaffold_384-1510915933:207038..207464Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1575043694:207038..207464TCONS_00063197-exon-scaffold_384-1575043694:207038..207464Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1491911889:207782..208101TCONS_00063197-exon-scaffold_384-1491911889:207782..208101Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1510915933:207782..208101TCONS_00063197-exon-scaffold_384-1510915933:207782..208101Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1575043694:207782..208101TCONS_00063197-exon-scaffold_384-1575043694:207782..208101Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1491911889:208868..209064TCONS_00063197-exon-scaffold_384-1491911889:208868..209064Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1510915933:208868..209064TCONS_00063197-exon-scaffold_384-1510915933:208868..209064Clytia hemisphaericaexon
TCONS_00063197-exon-scaffold_384-1575043694:208868..209064TCONS_00063197-exon-scaffold_384-1575043694:208868..209064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:207038..209064 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07007	0.19765	0.479389	0.303679	0.234761	0	1.38405	0	1.99016	5.28828	4.02154	2.38031	9.32928	8.91539	6.21695	9.83804	7.01027	7.858	5.80791	5.6856	5.368	5.47674	1.77467	2.55025	1.72488	0.00108783	2.75119	5.49636	3.89009	3.24636
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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