TCONS_00063193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063193
Unique NameTCONS_00063193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063193 ID=TCONS_00063193|Name=TCONS_00063193|organism=Clytia hemisphaerica|type=transcript|length=1206bp
CAAGCAGAATACGAAGATGTTGTCTCCAAAAATGCAGATGTGGAAGATCG
ATACTCACAGatttcttcgGAAATTGAAGATTTAGAACGACATCTCGAAG
ATGAAGAACAAAAAGCTGTCCAAGCAGAAGAGTaagtcaaatttttcttt
tatttttgttcgcATAGNTGAAGAACAAAAAGCCGTCCAAGCAGAAGAAC
GTGTAAAACACTTGGATAATGAAGTAGTGGTTGTAGGAAACAGTCTAAAG
GCTATGGAAATAAGCGAAAACCAGGCCAGTGCTAGAGAAAACCAATACAC
TACTAAACTCCAAGAAATGAGCACACGGTATCAAGAGGCTGAGTCACGTG
CTTCTAAATACGAAGATCACTCAAAAGAATTGGAATCCACCCTCGATGAT
TTACAAGATAAATTGGAGGAGGAAAGGAACCTATACGATAAAGTCAAAGG
TGATCTCGACAATCTCCTGGCTGAGATCCAAAACTTGAATGTCTAAATGA
ACTATTAACTATTGAATGACCACTGATTTCACAAATAAACAAAAGACCCA
ACATTTCAACAATGTAATTATCATTTTATTATGCATATTTTAAATTGTAT
GGTTTTAGTTACTCTTTTAGTTGCTCTTATTGCTgctgttttgttgttgt
ttacaTGTTTGAATTTCATCTTTAGATTAGACCTCTCATAAAATAAACGT
CATGAATACTTACCTCATTTGAAATAATGATGCAGCTGTCAaccatttaa
aggttttgtttttaagtaagagtgatatcgtttgcttactcatcaatttt
aattcacaagctttttcacattgaattgacacgaatgtggagcaagatcg
gtcagaaagaggaaaagaaaaacattttttgcttatatcagcataatata
acaatagtaagacactgtcctgaaatgaaatatgtgtctgatatgaaacg
ggaaaaaATGCACCTGATGCTTATAACATCCAAACAGTTTAGCATAATAT
CGCACTGCCTGGACCTCTCTAAACTAATTTTTTATTGCTAAGTTCAAaaa
tgttgtattttttactgtagTTGTTTTTATGAGCATTGTATCTATGTATT
TTACTGTTTATGACCCCCTTAAATAAATTTAGCATCTTTTTTGTGAATGT
ATATATTccttatttgtttttttttctaaaaaatacttcaaataaTATTT
ATAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_384:100057..108678+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063193 ID=TCONS_00063193|Name=TCONS_00063193|organism=Clytia hemisphaerica|type=transcript|length=8622bp|location=Sequence derived from alignment at scaffold_384:100057..108678+ (Clytia hemisphaerica)
CAAGCAGAATACGAAGATGTTGTCTCCAAAAATGCAGATGTGGAAGATCG
ATACTCACAGGTATATTTTGTGTAGCATTCTTGAAGCTCTTAAAATATGC
TGGAATCTGACCCCTGTTTGTTACTAATAATAGCAGGCAAGCACTAAGGT
CAAATTATAAATTTCTGCTGTTTCCAACAGGAAAAATGACTTAAAATCTT
TTAACAGTTTCTTTATTCATCACATCAATGGCttcataaatatttttcaa
ttgatAATAATATAAATTTGTCATTCCAACTGCTTACTTTGACcgaattt
cttttaatttttagatttcttcgGAAATTGAAGATTTAGAACGACATCTC
GAAGATGAAGAACAAAAAGCTGTCCAAGCAGAAGAGTaagtcaaattttt
cttttatttttgttcgcATAGNTGAAGAACAAAAAGCCGTCCAAGCAGAA
GAGTaagtcaaatttttcttttatttttgttcgcATAGGCTATTGCATAT
TTTTTAGCGATTGCAATTTTTGGACACATCACTATCTCTTCAAGATGATA
ATTTTTCTGTCACTAACTTCCTTAGTACTTAGGTATGAAATTGttgaatt
attttatttcaaagtttaaCGTTAATTTTTTCCGAGattatttgataaag
tttattAAAGTACATATTCACTTATGCCTGTAACCAAGGCAGATACACAC
ACTCTGTCCTTTACACGTTCTCTAAGAGCTTTGTTCCCTAACATTTGGAT
AGAAACGCAATTtcactataaaaaaacattatgCATACACATTTTCATAC
TTTGCAATACCTACATATATATACGAAATCcattaaaaaaactttagtTA
TGATCAAGAGGGCAGGTTGTTTCTGCTTTAGCATGAAGCACATACTACTA
ACCTCAATAGAAAAtattattatcattatcattatcAAACTACAGTACAC
TACATCTCTACAATGAATCttttaaagattgaaaaagAAACTTAACCTCG
AAAGGCACACCTACATACATACCCgagttttatttctttttattctcAAC
CTAACCTATGGTGTTCAGAACACAAACACACATACACACCCATAgatgga
aaaaatctcaaatgggTACAAGTCCATTTTATTTCTTTGTATTCTCAACT
TAACTAtggagtgaaaaaaaaacacaaacacaCATACACGTACAtacaac
gaaaaaaaaataatctaaaattgATCCAAGTCTATTTTATTTCGTTTTAT
CCTCAACCTAACCTCCGATGAGCAGACGTGTAAAACACTTGGATAATGAA
GTAGTGGTTGTAGGAAACAGTCTAAAGGCTATGGAAATAAGCGAAAACCA
GGCCAGTGCTAGAGAAAACCAATACACTACTAAACTCCAAGAAATGAGCA
CACGGTATCAAGAGGTAAGGGCGCGTTAGAAGGGCGTTTCATTAGGCGCG
AGGGTGTGAAAATCATTTAGGGTGGTTTTTAGGATGGATTAAAAATGATC
TCAAATTTTGGTGTCGTAATCGTCAATCCTTGTGGAATACACGAATTTCC
TATTTTacagattcatgtaaaaaagtcacgaaaaaacgtcgacTGGAGCG
TCAACTAAGATTTTTTTATAGCGGCTGTTGTGGGCTGTTACCTTTCGTGA
AATTATTTCCCTTGAAAAGTTTGGTTACTGTGAACCAGTGTGAACACCAC
TTTGTTGGGATCATTTTTAATCAATATCAtaggttggtctaatgtcgaca
cccctcttctaattttgacacccttctttagagatgggAATAACGGGAAG
gaagaggggtgtcgacattagaccaacttacggtacacaGCAGAATGGGG
TGGTTTCCTGCTTTCCCTTGTTTCATGATATAATATGACTTTGGGTGAAA
CCTCAGATTACTTTTGGATCACTTTTTATCGccgtttctttacttccaaa
tatctatatttcaaaaaagaaatatttgataGTCTTTCGTTAAAGTCCTC
AGGTTGAGGTGATCCGAGTAAAATTCGAGTTACTTACTCAAAGTCATATT
GTGTTCATGATTTATTATCCCCATAAGCCAATTTCATTCATTTATATACA
TATACACTTCTTTATCTAATCAATACACCGTTCTCTCAACACCCTCCCGC
CCATCCGCCCAAACAGAATGTCGAAAACATTGGATAAAACGTTAACGGAG
GTTGGCAACTCCTTACGTTTGATGGAACGTAACGACAAAGACGCGTCAGA
GCGGGAAGATAAGTTGTCATCAAAACTTGCAGCTATGAAGCAAACATACA
CGGAGGTAATGTAACCCCTCCCTAGCCCTAAAACCCCCTATCTCTGTCAT
CGGGTTTTAGTCTAAATTCTTCTCTgctgtttttttatttaccaATACCA
TCTGTCTTctattttgatcaatttttatttcttttgtttgccCAAAACTT
TTTATATGACACGATCTTATCtacactgaaaatgaaaaactaaagATTTT
ACGTCAAAAGTCTAAGGCTTGTGGTTTTTGCAAATCAAGGATATAAACCT
ATCAACCTTTAAAGCGTGAGGAGACTAAGTTCGAGTTTACCAGGAAGAAA
TGACTTCAAAATGTCTAAAGCCATGCATTCACATTCTCATTATAAACAAA
CATTTTGACATCATTTCCTTGTAAGTTCTATCATTACCAGACCCCTCAAA
GGCTTACCATACccaaagatttataaagcccgaagggctcgatgtcgtgc
tttaagccatcgcaggcaaaacaaattatattgttgttattgtttccgaa
aacccgcgaagcttctgattggtcaagcgctgaaattctattgtaatgtc
acgtgacctaggtaggatctcctacctaacctcgacacacttttcagcaa
aagtttgatatctagcccttcgggctttataaatctgacCACACCGTCAG
GTTTGATAGGTACATTTTAATCACGCGAGATTGTTGTTTCAGGCTTATAA
GTTAACCCTTTTAATTTCTGGATACTTTTTGTTTAATTTCTCTACTTTGA
TCTCAATTCAGGCTGAGTCACGTGCTTCTAAATACGAAGATCACTCAAAA
GAATTGGAATCCACCCTCGATGATTTACAAGGTAAGTCTATAACgatttt
tcaacgtttatctcaCGTTTTATTGGAACTGAAATATGACTTTGACCCAA
AAAGTACGTAATATACATAAgctctctcttattcgaacttctattattct
tTTTATAATTCTAACTAGTTTCCAGTCCTCGTCAAGGATGAAACCCTTTG
AAANACTTCTATTATTCTTTTTATAATTCTAACTAGTTTCCAGTCCTCGT
CAAGGACGAAACCCTTTGAAAATATTCTCTATATTTCGAGTCTCTGTAAT
TCGAGCAAATGAGTTTCCCTgttcgaattagtgagagtcaactgtattgt
CAGACAATATTattgacaaaacaaaaaatatattgtGAAGTGCTCAGAAT
GTATTGAAAAGGTGTTCACTATTATATTCCAACAAAATAGGGGGAAataa
gtaaaacaaaaaaatgaagcgactgcttagATTGAAATGAGCTGCTCCAT
TAAAAATccgtacagggggggggggatagacgaacctttttaagtcacaa
taaaattcttggaaatgtgaggataacccctggaaattggcaaaattttc
aaagaaaatcttGGAAATATTTTAAAGAATACTTAAGTTACGGTTGACGA
ACTAAACCTGTCTTTTACCTCcttgaaattttagaataactatttacccc
ctgataaatgaaaaaaacactcatTTAGACCCTCTGGAAATTCTTTTCAT
GGTTACCCCCGGGAAATGTTcgcccccccctgtatggagataaaatggaa
tggcccaatgccCGTCATATTTTATATAGGATATGGTGTCatgggggtag
tgaaaaatctacaaaatttgccatgtccggggggtaaacttgctctgttt
gggggtaattttgcttggtttatgggttattttgaatgtctcggggtcaa
ctgatgcttgtccggcgggtcagacctgctgtccgggggtcaaaattcac
aatgtccgggggtcaaaattcacaatgtccgggggtaaatttataaaaaa
agttatatcctccacccccatattcaattttttttctggaagagcccaat
ttggTGAAGATATTGTTCTTACCAGACTGGGAATGTTTTAGTTTTGGTTA
GAAGTAATTTTGGCGAATCACAGGGTAAATTTGTTTTTAGACAAATTGct
ttttcaaacaaagattattttagagaatcataaaaaactttatttttgcg
AGGAACATTGTTCTCGTTTTTTTCGTAGCGGCTTTCGGCTTAgttttctg
taaaatatttttttctaaaatgacaggtacgacctttttttaaacacaAA
AACGAACGATTTTCAATATATGACAAGGTAAAATGACTACTTAATTATTT
CCTGTCTGTAATTTGAGCGAGATCAATCTCTCCTCCCAGttgaaaaacta
tttttcaaaagtcaattaTGACCAGCTATGACTGATTTCTAGCACTACAA
GAAGCTCTTGAAAAAAGAGcaagttaaaattttgtttttaaaaatataag
aGTAATAtcttttgcttactcatcaattttaattcacaagctttttcaca
tttgattgacacggacgtggagcaagattggtcagaaaaaggaaaggaaa
attttttttgcttatatcagcctaatataacaatagccagacactgtcct
gatatgaaatattatgtgtctgatatgaaacggaaacacttatgtaaaaa
taaaacctttaaactttATTTGGACCCCacctttgatttgtttttgaaaa
tagtttcaaaggtcaaaagaaaaatactttcttttttgcTAAGCCTAAAT
TTTTGATTTAGTCCATATTtactttatttcattttatttccaacccctgg
aaattaggccccttttattaaaattagaaaatattttcaaagcaagTTTA
TTAAACACCCGAGAGTTACTTGCTGTCTGGTTTATGGCTTCTTCTGTAAA
TTTGTCTCAtaactcaaatttttttctcttaagtTTAGACAAGAGTGACT
GTTTATTTGTTTTGACTAGGCCTGTTCAATAGTGTTTTATGGTTTTCATA
ACTAAGTTTTCTTCTACTGTTATATGTTGGTCCTCGATTTTAAGTTTGTT
TAAGGTTTAAAGAGGAtttcgaaattatttttctatgGCCTTGTTTGGAG
TTTCGAGGACCTACTTTTGTATGTAACAAAAATCTAAACTCAACCATCAT
TCTTTGTCAAGTTTCATCGGGCTtcctcaaattttaaatttaggtTAATT
GCAGAACCCTAAAACTctaaatttattaatttttgacaGAGTCTAGTGGA
GCCAATAAAGGTCAAACTGTTAAGGTTATGAGCAGTCTACCATAGTTGAT
GTCATCAAAAGAAAAGCTTTTCAGTTTGCTCTCAAATAGGCTGCCTAGTT
TACATGGTGATTAATGTATGTTGGAAGGGCTTCATCTGTCTTTTACAGCT
CTTAAGCTCTAGGTGCGTGTTTATATAAATTggcgaacaatattcgacaa
gaTGTTTGCGGACCATAATTCATGAAGTAAATAATAGGCGGTTCTCtgtt
ataaaaaggaattttctttctgaaaGCACCCCCCCTATTTTATTTGGGgc
aattgggccattccattttctAACGATACAGGGAAtggacgaacttttcc
aggggctAATCTGAAgcaaaaactttctttaatttttcagggggtaaaaa
aatattctaaaactTTCAGGGGGTTAAAGACTGGTTTTAGTTGATCACCC
TTACTTTTAAGGTATGAAGAAAACATTTCCAAAGGTCTTGcatattttgc
cattttccagggggagggtcaagaattattttttttcttaaagagGTGCA
TTCACCCCCTGTATTGATTTAAAGTGGAACAGCCCATCGTGGTCAATATA
TTGTATATTGTAACCCTTTAGTTCTACAAATCTTGTGATTTTCCAAATGT
TTTCGATATGGAGAGCTATGAGAGAATATTTGGCCTATAGACAAAAGtat
aagaacattgtaagaagaTTTATAACAacattttcttaggaaattacacc
aaaataaatacaaaatgatgaaaataagaacaatggatattttagaattc
ttttaaaaaggTCTTAGAACTTTCCTTCTCAAAAGGTTGTACTacacgtc
tttttataagagcaaattatatataagaacataagacttcgattgccaaa
atgttaagaacaggCTAAGtgtattttaaggctttgcagactctaaatgg
ccaatttcttaagaaaattgacCAAAGTGCTCacgaaatggtgaaaataa
gaatatatgctaagaacatttttaggcttgaagctaaaaaagttaagaac
atccgaaggcttcaaaaatttaggatgttcttatttaaaatAAAACGTGT
AATGTTGACGAGAAAGAATGTATAGTCTATCACTCATAACCATGTCTGTG
GAGAAAGTAACACGtcgttttgacattttctttcaatcAACTTAATCAAT
TTAAGCTTtacagtgaaaaaaaaatctcaatatagTCTTAGATCTGATTT
AATATTGAcaaattttatcaaagaaaagttgaaatttttttaataatgta
GCATATATATGATTAACTGTAACATGTTAAAATGCTACATAATCTTAAAA
ATTTAGTATATATACTGCATTCTTATGAACCCCCTCTATgggaatttgtt
ttttaaaattgCTTTCCATCTATTGCTCTCAGTTTTCCATGAAGATCAGA
ATGTACAGGAATATAAACCTTCAAATTACCGACTTTATTTGTAGTTGATC
AATAAACGCCCTCTCCCACTTTTATCTATTTCTTTTGGAGAACTTTATGG
ATCCCTATTTCTACTAGGGCCCATCGATTCGGGCTACGATGAGAATTGAA
CTGTTGATTAATCATTATGCACCTTTTTATATTAAAACTGGAAACTTTTG
GCTGAGGTTCggctgtttttgtttttccgaTTAAGATTTTAAATGCTCTT
AAATTGTTCCTCGTTTATAAAAAAGGGGGTAGCAACTGCGATTATAAACT
CATCCGTACGGTCATTGTTGAAAAAAGTGTCTCATTTTTTGTCTATGTAA
AGTGACTCGTCAATAGTAATTGAGATTAAAAACTGATGTCACTCTTTTAC
TAAAAAATAACCtacctctttaaaaaaattgctttgaatgATTTAATCTA
CTTTTAGGATGAGTGACAAGTCTGTTATTACGTCACCATCTATATATCTA
AACTGCTACCACTCCGGTAGTCAAAGGCTATTTTTATGTTTCACTTGCTT
TAAGTCGAAGACGatccgaaggctcctctttcggtAGCTGTCTACCGGAC
GTAGCGTCACTCTTTTCCCCTAATTTGTCTGACTTACCTAGGACCCCTTC
TCTTGTTGCTGAACCGGAGAAGTGTCAAGTAACATTTTTTGCTAAGTATA
AAGTCTTTGGCATGACCCGACCTCGCTTCGAACCCAAGACTTTGCACTTC
GCAACCGAGTACTTTACCTTTTCACTAAGAAATAAGGGGAGAGACTTAGC
TGTATTATAAGTCTCCAGCCAAAGTGTCCCAGGCGGGATTTCTATACCCA
CGACACTGATTTCGCCATAACACTGGCGGCGTGCGTATTCATTTAATTCA
TATAAATCCTTTTCTTTTTACAGATAAATTGGAGGAGGAAAGGAACCTAT
ACGATAAAGTCAAAGGTGATCTCGACAATCTCCTGGCTGAGATCCAAAAC
TTGAATGTCTAAATGAACTATTAACTATTGAATGACCACTGATTTCACAA
ATAAACAAAAGACCCAACATTTCAACAATGTAATTATCATTTTATTATGC
ATATTTTAAATTGTATGGTTTTAGTTACTCTTTTAGTTGCTCTTATTGCT
gctgttttgttgttgtttacaTGTTTGAATTTCATCTTTAGATTAGACCT
CTCATAAAATAAACGTCATGAATACTTACCTCATTTGAAATAATGATGCA
GCTGTCAaccatttaaaggttttgtttttaagtaagagtgatatcgtttg
cttactcatcaattttaattcacaagctttttcacattgaattgacacga
atgtggagcaagatcggtcagaaagaggaaaagaaaaacattttttgctt
atatcagcataatataacaatagtaagacactgtcctgaaatgaaatatg
tgtctgatatgaaacgggaaaaaATGCACCTGATGCTTATAACATCCAAA
CAGTTTAGCATAATATCGCACTGCCTGGACCTCTCTAAACTAATTTTTTA
TTGCTAAGTTCAAaaatgttgtattttttactgtagTTGTTTTTATGAGC
ATTGTATCTATGTATTTTACTGTTTATGACCCCCTTAAATAAATTTAGCA
TCTTTTTTGTGAATGTATATATTccttatttgtttttttttctaaaaaat
acttcaaataaTATTTATAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039594XLOC_039594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063193-exon-scaffold_384-1491911889:100057..100116TCONS_00063193-exon-scaffold_384-1491911889:100057..100116Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1510915933:100057..100116TCONS_00063193-exon-scaffold_384-1510915933:100057..100116Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1575043694:100057..100116TCONS_00063193-exon-scaffold_384-1575043694:100057..100116Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1491911889:100371..100508TCONS_00063193-exon-scaffold_384-1491911889:100371..100508Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1510915933:100371..100508TCONS_00063193-exon-scaffold_384-1510915933:100371..100508Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1575043694:100371..100508TCONS_00063193-exon-scaffold_384-1575043694:100371..100508Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1491911889:101332..101470TCONS_00063193-exon-scaffold_384-1491911889:101332..101470Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1510915933:101332..101470TCONS_00063193-exon-scaffold_384-1510915933:101332..101470Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1575043694:101332..101470TCONS_00063193-exon-scaffold_384-1575043694:101332..101470Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1491911889:103118..103187TCONS_00063193-exon-scaffold_384-1491911889:103118..103187Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1510915933:103118..103187TCONS_00063193-exon-scaffold_384-1510915933:103118..103187Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1575043694:103118..103187TCONS_00063193-exon-scaffold_384-1575043694:103118..103187Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1491911889:107880..108678TCONS_00063193-exon-scaffold_384-1491911889:107880..108678Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1510915933:107880..108678TCONS_00063193-exon-scaffold_384-1510915933:107880..108678Clytia hemisphaericaexon
TCONS_00063193-exon-scaffold_384-1575043694:107880..108678TCONS_00063193-exon-scaffold_384-1575043694:107880..108678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:100057..108678 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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