TCONS_00063184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063184
Unique NameTCONS_00063184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063184 ID=TCONS_00063184|Name=TCONS_00063184|organism=Clytia hemisphaerica|type=transcript|length=797bp
AAATCGATCCGAGTTTATCCAAAACTATTTTGAAAGAAGATGAATACAGA
TACATAAACGATCTGATCATTCTATACCAAATGGAGCATCGCCCAAAACT
ACGGATCGCTTTGTTACACGTTTTCGGGTGCTTCTGCCAACTCGGTGCGG
ACTTTGTATCAACGTTGCTATGTTCAGTATTACCGACGGAGTTGGCGCAA
GACTTGATGCAAGATCAATCCGACATGACGAAATTTTTAACGACGTCCCT
GATGTTGACGATGATTTTTTCGACAGGTGAACCAGTGCCCTACCATCATT
ATGTTCagttCAACGACGAGTTTGTGGAGTTTGTACTGAACACCATTGAA
GAACCACCGGACAACGATATCGATGATCAAGTTTCGGACACTCTCATTGG
AATGTTACTCTCCTTTAATCAACATTTCAAAGCGCCTCGTTCCAGTACGC
TGATACAGGTTTTAAGAAATCGGACAGTCTTTCGGACGCTGACTGAGAAA
ATTCTACTCCTGTTAAATCGTGAAACTGATCCCTGTGCGATGTTTGATTT
CATCGACCCTTGTCCAGATTCTGTTCTCAAATTCCTCATCGACGTCTTTA
GCGCTAAAGAAACATCAGAAATGTTCTTCACTAACGATTTATACGTTCTC
TTTGACATCATCTTGAGACAGCTGGTTAATCGAGAAGAGAAGGATAAGGT
AAGCGAGACCAAAATGTGGTCTTTTCTTATTCCTTAGTGTTTGATAAACA
GAAGAGTCAAAGGTAGAATCGAATTTGAAACTGTGAGTAACTAGGGC
Run BLAST on NCBI

protein sequence of TCONS_00063184-protein

>TCONS_00063184-protein ID=TCONS_00063184-protein|Name=TCONS_00063184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
IDPSLSKTILKEDEYRYINDLIILYQMEHRPKLRIALLHVFGCFCQLGAD
FVSTLLCSVLPTELAQDLMQDQSDMTKFLTTSLMLTMIFSTGEPVPYHHY
VQFNDEFVEFVLNTIEEPPDNDIDDQVSDTLIGMLLSFNQHFKAPRSSTL
IQVLRNRTVFRTLTEKILLLLNRETDPCAMFDFIDPCPDSVLKFLIDVFS
AKETSEMFFTNDLYVLFDIILRQLVNREEKDKVSETKMWSFLIP
Run BLAST on NCBI

transcript from alignment at scaffold_384:1..2929+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063184 ID=TCONS_00063184|Name=TCONS_00063184|organism=Clytia hemisphaerica|type=transcript|length=2929bp|location=Sequence derived from alignment at scaffold_384:1..2929+ (Clytia hemisphaerica)
AAATCGATCCGAGTTTATCCAAAACTATTTTGAAAGAAGATGAATACAGG
TAAGGTTTTTTATATATACATTGAattcaaagaacatttttcttcaGGTA
GTCTTTCAACTGCAAAATTTTGTAGCTCGTTTGAATTCAGTTAAATTCTC
TCTTTGAAGAGAGATTATGATTGAATCTGATTGGGTGCAAGAgttttaaa
cattattttttcgaaaaaagtatGATTGGTTGCaggagttttgaaatttt
ttttttgaattcttttttctaaatttgataGATACATAAACGATCTGATC
ATTCTATACCAAATGGAGCATCGCCCAAAACTACGGATCGCTTTGTTACA
CGTTTTCGGGTGCTTCTGCCAACTCGGTGCGGACTTTGTATCAACGTTGC
TATGTTCAGTATTACCGACGGAGTTGGCGCAAGACTTGATGCAAGATCAA
TCCGACATGACGAAATTTTTAACGACGTCCCTGATGTTGACGATGATTTT
TTCGACAGGTGAACCAGTGCCCTACCATCATTATGTTCaggtaattttct
tttttcgaaaCGAGGTCCGCAACACCTTTATCAGTGCCGCAACATTTTCG
GTTTATatatatcaaattttattttagaattcCAATTTGGGTCTAGAATT
TAGCGGTTCTACCCCTGTATGAAATAAAAAACCTTTCAACCTTTCAAAGT
TTCACTAGATAGGCTACTACTCCCGCTTCAATCAATGAACTGGGGATGTT
AACCATGCTAATGAGTTAAACTGTAGTGTCGTGGAACGAACGCAGAGAAT
GCAGAAAGCCTCCTGGTCACGTCAGGTAGCGAGCTCTCATGAACAagtct
ctgtaactcgaactTTTCATAACTCAAACTAAGTTCAACGTTTTCAagtt
tgtacatgttttttttaagcataacgcttataagcatatgaaggctcaga
tttgcagatttcctaagcataacataagcatatacgccAGCCTGTAATAT
GTTTCATGTGGTcaattctttttgtttaaaaaggtttggaagtggtcaag
taaaaaaagccATTTCGTGACTAGCCATATTCCACTGCTCCCGAAATCTG
AACGCCATTTGAATCAAATGTTTACTAAATTTCGGAGAATTTTCCTGATA
TAAGCATTATAATTCATAAGCATATGATAAGCATAGGCTATGCCTTGATG
CTTTGAAAGATTGAGCACGCACGAGACTGACCAAGGGGCTGACActtgct
tataacaaaaaaaacatgtatgaagactcattcaaatatttttagttCAA
CGACGAGTTTGTGGAGTTTGTACTGAACACCATTGAAGAACCACCGGACA
ACGATATCGATGATCAAGTTTCGGACACTCTCATTGGAATGTTACTCTCC
TTTAATCAACATTTCAAAGGTACAACGATCTAAGtattatttttcctttt
cttttgcTTCCTACTTTTGCTGATAATTAATACTGCAAGATTAGAATAAT
TGTGCAAAACAATTAATTATTAGTCTGATAGAATTAGCTAAAAAAGGCCC
TAACGCAGCTGATTGGAACAAAATGTTTCTTTTGGGTCCGAGAACCATAA
ATTGGGAAACACCTCTCCAACCCCGTCTGAAATAGGTATTACCCCAACCT
CAAATCTCTTATCAGCCCCCACCTTATCAACAACCTAAATTTGTAGAATC
TCCAGACCCCAACCGAAAATCCAGGAGCACTCAAGATTCTAGTTAAAAGT
CCATTTTAGCTGAGCAAAACTTTAAACCCAAATTTTCAGTTAGTACTTTT
GAAGGCCCATTCTTTGAGCCTGGTTTGAAAAGGTCAATCTTATTGAGtag
ttgatgacgtcacaggGAAAATATGGCAGATTTTGGCTCAATTCGGACCA
TTTTAAGGGGTCTAAATTGTCTCTGAAAACGTTCAAAAAATCTTGTTTGC
AGGTGTTGAAAAATTTACGTCACCATATTATACTATGTCCAAAAGGGCCC
AAAAATTATCGAATTAAATGTGGTTATTTTTTGTGGTTCTTTCATCCATA
ATGAACCTCTGTGGTAAATTTCTACCGGACTTTCATTTTAGGGTTGATTT
ACACGTCATTAATCTTGTCGGTGGTAAGAGATAATTTGTTACAAAAGAAA
ACGACTTCTCcaattttcactttatttgTACGTATAGTTTTGAAACCTCA
ATCTTTTTCTTTCAGCGCCTCGTTCCAGTACGCTGATACAGGTTTTAAGA
AATCGGACAGTCTTTCGGACGCTGACTGAGAAAATTCTACTCCTGTTAAA
TCGTGAAAGTAAGTTTGTACTGTTTCTGCATGTAACGTTAGCATGTTTCC
ACGATAGCATTATTATTCTTATATCGTGCCAACATGTATACATTGACTTA
AATTTGATAGTGAACTACTATACTGAAGTTTGAAAAGAGATCTCATGACT
TTCGCATGACCAGTACAactgctctaccgactgagctatccAGTCCACAC
TGGAAGCACCTTCGGGAAGTAATTCACTCCACAGTTTTCAACTTCTTCAA
CTCTTTTTATGTTtgcaaaactttggggcagcttGTAGAACTAAAAAATT
AACCTACGGAGCTGAAATTTTTAGTGATTCAGTattttcattttactttt
tttacagCTGATCCCTGTGCGATGTTTGATTTCATCGACCCTTGTCCAGA
TTCTGTTCTCAAATTCCTCATCGACGTCTTTAGCGCTAAAGAAACATCAG
AAATGTTCTTCACTAACGATTTATACGTTCTCTTTGACATCATCTTGAGA
CAGCTGGTTAATCGAGAAGAGAAGGATAAGGTAAGCGAGACCAAAATGTG
GTCTTTTCTTATTCCTTAGTGTTTGATAAACAGAAGAGTCAAAGGTAGAA
TCGAATTTGAAACTGTGAGTAACTAGGGC

Coding sequence (CDS) from alignment at scaffold_384:1..2929+

>TCONS_00063184 ID=TCONS_00063184|Name=TCONS_00063184|organism=Clytia hemisphaerica|type=CDS|length=3675bp|location=Sequence derived from alignment at scaffold_384:1..2929+ (Clytia hemisphaerica)
ATCGATCCGAGTTTATCCAAAACTATTTTGAAAGAAGATGAATACAGATA
CATAAACGATCTGATCATTCTATACCAAATGGAGCATCGCCCAAAACTAC
GGATCGCTTTGTTACACGTTTTCGGGTGCTTCTGCCAACTCGGTGCGGAC
TTTGTATCAACGTTGCTATGTTCAGTATTACCGACGGAGTTGGCGCAAGA
CTTGATGCAAGATCAATCCGACATGACGAAATTTTTAACGACGTCCCTGA
TGTTGACGATGATTTTTTCGACAGGTGAACCAGTGCCCTACCATCATTAT
GTTCagttCAACGACGAGTTTGTGGAGTTTGTACTGAACACCATTGAAGA
ACCACCGGACAACGATATCGATGATCAAGTTTCGGACACTCTCATTGGAA
TGTTACTCTCCTTTAATCAACATTTCAAAGCGCCTCGTTCCAGTACGCTG
ATACAGGTTTTAAGAAATCGGACAGTCTTTCGGACGCTGACTGAGAAAAT
TCTACTCCTGTTAAATCGTGAAACTGATCCCTGTGCGATGTTTGATTTCA
TCGACCCTTGTCCAGATTCTGTTCTCAAATTCCTCATCGACGTCTTTAGC
GCTAAAGAAACATCAGAAATGTTCTTCACTAACGATTTATACGTTCTCTT
TGACATCATCTTGAGACAGCTGGTTAATCGAGAAGAGAAGGATAAGGTAA
GCGAGACCAAAATGTGGTCTTTTCTTATTCCTTAGATCGATCCGAGTTTA
TCCAAAACTATTTTGAAAGAAGATGAATACAGATACATAAACGATCTGAT
CATTCTATACCAAATGGAGCATCGCCCAAAACTACGGATCGCTTTGTTAC
ACGTTTTCGGGTGCTTCTGCCAACTCGGTGCGGACTTTGTATCAACGTTG
CTATGTTCAGTATTACCGACGGAGTTGGCGCAAGACTTGATGCAAGATCA
ATCCGACATGACGAAATTTTTAACGACGTCCCTGATGTTGACGATGATTT
TTTCGACAGGTGAACCAGTGCCCTACCATCATTATGTTCagttCAACGAC
GAGTTTGTGGAGTTTGTACTGAACACCATTGAAGAACCACCGGACAACGA
TATCGATGATCAAGTTTCGGACACTCTCATTGGAATGTTACTCTCCTTTA
ATCAACATTTCAAAGCGCCTCGTTCCAGTACGCTGATACAGGTTTTAAGA
AATCGGACAGTCTTTCGGACGCTGACTGAGAAAATTCTACTCCTGTTAAA
TCGTGAAACTGATCCCTGTGCGATGTTTGATTTCATCGACCCTTGTCCAG
ATTCTGTTCTCAAATTCCTCATCGACGTCTTTAGCGCTAAAGAAACATCA
GAAATGTTCTTCACTAACGATTTATACGTTCTCTTTGACATCATCTTGAG
ACAGCTGGTTAATCGAGAAGAGAAGGATAAGGTAAGCGAGACCAAAATGT
GGTCTTTTCTTATTCCTTAGATCGATCCGAGTTTATCCAAAACTATTTTG
AAAGAAGATGAATACAGATACATAAACGATCTGATCATTCTATACCAAAT
GGAGCATCGCCCAAAACTACGGATCGCTTTGTTACACGTTTTCGGGTGCT
TCTGCCAACTCGGTGCGGACTTTGTATCAACGTTGCTATGTTCAGTATTA
CCGACGGAGTTGGCGCAAGACTTGATGCAAGATCAATCCGACATGACGAA
ATTTTTAACGACGTCCCTGATGTTGACGATGATTTTTTCGACAGGTGAAC
CAGTGCCCTACCATCATTATGTTCagttCAACGACGAGTTTGTGGAGTTT
GTACTGAACACCATTGAAGAACCACCGGACAACGATATCGATGATCAAGT
TTCGGACACTCTCATTGGAATGTTACTCTCCTTTAATCAACATTTCAAAG
CGCCTCGTTCCAGTACGCTGATACAGGTTTTAAGAAATCGGACAGTCTTT
CGGACGCTGACTGAGAAAATTCTACTCCTGTTAAATCGTGAAACTGATCC
CTGTGCGATGTTTGATTTCATCGACCCTTGTCCAGATTCTGTTCTCAAAT
TCCTCATCGACGTCTTTAGCGCTAAAGAAACATCAGAAATGTTCTTCACT
AACGATTTATACGTTCTCTTTGACATCATCTTGAGACAGCTGGTTAATCG
AGAAGAGAAGGATAAGGTAAGCGAGACCAAAATGTGGTCTTTTCTTATTC
CTTAGATCGATCCGAGTTTATCCAAAACTATTTTGAAAGAAGATGAATAC
AGATACATAAACGATCTGATCATTCTATACCAAATGGAGCATCGCCCAAA
ACTACGGATCGCTTTGTTACACGTTTTCGGGTGCTTCTGCCAACTCGGTG
CGGACTTTGTATCAACGTTGCTATGTTCAGTATTACCGACGGAGTTGGCG
CAAGACTTGATGCAAGATCAATCCGACATGACGAAATTTTTAACGACGTC
CCTGATGTTGACGATGATTTTTTCGACAGGTGAACCAGTGCCCTACCATC
ATTATGTTCagttCAACGACGAGTTTGTGGAGTTTGTACTGAACACCATT
GAAGAACCACCGGACAACGATATCGATGATCAAGTTTCGGACACTCTCAT
TGGAATGTTACTCTCCTTTAATCAACATTTCAAAGCGCCTCGTTCCAGTA
CGCTGATACAGGTTTTAAGAAATCGGACAGTCTTTCGGACGCTGACTGAG
AAAATTCTACTCCTGTTAAATCGTGAAACTGATCCCTGTGCGATGTTTGA
TTTCATCGACCCTTGTCCAGATTCTGTTCTCAAATTCCTCATCGACGTCT
TTAGCGCTAAAGAAACATCAGAAATGTTCTTCACTAACGATTTATACGTT
CTCTTTGACATCATCTTGAGACAGCTGGTTAATCGAGAAGAGAAGGATAA
GGTAAGCGAGACCAAAATGTGGTCTTTTCTTATTCCTTAGATCGATCCGA
GTTTATCCAAAACTATTTTGAAAGAAGATGAATACAGATACATAAACGAT
CTGATCATTCTATACCAAATGGAGCATCGCCCAAAACTACGGATCGCTTT
GTTACACGTTTTCGGGTGCTTCTGCCAACTCGGTGCGGACTTTGTATCAA
CGTTGCTATGTTCAGTATTACCGACGGAGTTGGCGCAAGACTTGATGCAA
GATCAATCCGACATGACGAAATTTTTAACGACGTCCCTGATGTTGACGAT
GATTTTTTCGACAGGTGAACCAGTGCCCTACCATCATTATGTTCagttCA
ACGACGAGTTTGTGGAGTTTGTACTGAACACCATTGAAGAACCACCGGAC
AACGATATCGATGATCAAGTTTCGGACACTCTCATTGGAATGTTACTCTC
CTTTAATCAACATTTCAAAGCGCCTCGTTCCAGTACGCTGATACAGGTTT
TAAGAAATCGGACAGTCTTTCGGACGCTGACTGAGAAAATTCTACTCCTG
TTAAATCGTGAAACTGATCCCTGTGCGATGTTTGATTTCATCGACCCTTG
TCCAGATTCTGTTCTCAAATTCCTCATCGACGTCTTTAGCGCTAAAGAAA
CATCAGAAATGTTCTTCACTAACGATTTATACGTTCTCTTTGACATCATC
TTGAGACAGCTGGTTAATCGAGAAGAGAAGGATAAGGTAAGCGAGACCAA
AATGTGGTCTTTTCTTATTCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039591XLOC_039591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063184-exon-scaffold_384-1491911889:1..49TCONS_00063184-exon-scaffold_384-1491911889:1..49Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1510915933:1..49TCONS_00063184-exon-scaffold_384-1510915933:1..49Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1575043694:1..49TCONS_00063184-exon-scaffold_384-1575043694:1..49Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1491911889:282..540TCONS_00063184-exon-scaffold_384-1491911889:282..540Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1510915933:282..540TCONS_00063184-exon-scaffold_384-1510915933:282..540Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1575043694:282..540TCONS_00063184-exon-scaffold_384-1575043694:282..540Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1491911889:1296..1419TCONS_00063184-exon-scaffold_384-1491911889:1296..1419Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1510915933:1296..1419TCONS_00063184-exon-scaffold_384-1510915933:1296..1419Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1575043694:1296..1419TCONS_00063184-exon-scaffold_384-1575043694:1296..1419Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1491911889:2216..2308TCONS_00063184-exon-scaffold_384-1491911889:2216..2308Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1510915933:2216..2308TCONS_00063184-exon-scaffold_384-1510915933:2216..2308Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1575043694:2216..2308TCONS_00063184-exon-scaffold_384-1575043694:2216..2308Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1491911889:2658..2929TCONS_00063184-exon-scaffold_384-1491911889:2658..2929Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1510915933:2658..2929TCONS_00063184-exon-scaffold_384-1510915933:2658..2929Clytia hemisphaericaexon
TCONS_00063184-exon-scaffold_384-1575043694:2658..2929TCONS_00063184-exon-scaffold_384-1575043694:2658..2929Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063184-proteinTCONS_00063184-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:1..2929 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06825	5.29537	1.98116	1.40356	10.1709	5.20807	6.82632	7.40742	3.86416	6.42384	3.30095	2.6923	3.89239	3.33385	3.97427	5.18418	5.43531	6.45309	3.07866	2.95313	4.43358	4.18282	6.15706	7.79898	8.03277	7.63158	4.05392	2.29567	5.69233	5.45843
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018556DUF2013
Blast
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BLAST of TCONS_00063184 vs. Swiss-Prot (Human)
Match: SPN90 (NCK-interacting protein with SH3 domain OS=Homo sapiens GN=NCKIPSD PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.075e-46
Identity = 91/232 (39.22%), Postives = 131/232 (56.47%), Query Frame = 3 
Query:    6 DPSLSKTILKEDEYRYINDLIILYQMEHRPKLRIALLHVFGCFCQLGADFVSTLLCSVLPTELAQDLMQDQSDMTKFLTTSLMLTMIFSTGEPVPYHHYVQFNDEFVEFVLNTIEEPPDNDIDDQVSDTLIGMLLSFNQHFKAPRSSTLIQVLRNRTVFRTLTEKILLLLNRETDPCAMFDFIDPCPDSVLKFLIDVFSAKETSEMFFTNDLYVLFDIILRQLVNREEKDKV 701
            DP + K + K +E+  +  L+  YQMEHR  LR+ LL  FG  C L A  +STL+ SVLP ELA+D+  D  D  K   ++L+L M+FS GE VPY HY      F +F+LN +E+    D  +Q+ D  + +LL+ N H  A   + ++  L      +  +EK+LLLLNR  DP  +F      P SVLKFL DVF +  T+ +F+  D+  L DI +R + +    DK+
Sbjct:  425 DPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTTEQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKL 656
The following BLAST results are available for this feature:
BLAST of TCONS_00063184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPN907.075e-4639.22NCK-interacting protein with SH3 domain OS=Homo sa... [more]
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