TCONS_00063175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063175
Unique NameTCONS_00063175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063175 ID=TCONS_00063175|Name=TCONS_00063175|organism=Clytia hemisphaerica|type=transcript|length=507bp
tttattgagTCATTATCACAAGTAGAGCATCAGTTGTACAGATAGCTGGT
CAAGACTTGGGAAGAAGGCAAGAAATTTTAAGTTATGAAGAAATGATATT
TGGTACCCCTCAATTGGCATGTAGAAGAATTGGCAAGGATGGAGTGAACT
GTAAAGGAGGTACTAACCAATAACAAGTTTTCCAGAATTACTAATGGCTA
GAATTGATAGCAATGAGCAACTTTGGGTATCCAAATATTCCGTTTCCCCT
TTCAATAAAGGGCTCGTAATTGCGGTTGTGATAGATTCTCCTACCGGACC
GGCTGTACGGTTAGGAGTCTCTCAGCAACGAGGATGTTAGTGTAAATGTT
CGTAGTGCAAGTTGTGAGGATTCAGGCCGGCTGTCTGGGCAACCCGGCTG
GTTGGGAAAATCCGACGATTCTAGGCAATTCATCTCGATAGGGAGGTCAG
ATTCGGAACAAAGTCCGGCTTTATCCCGGCTGGTGGCGGACCTCCTCAGT
TTTCGNN
Run BLAST on NCBI

transcript from alignment at scaffold_383:181852..182358

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063175 ID=TCONS_00063175|Name=TCONS_00063175|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_383:181852..182358 (Clytia hemisphaerica)
NNCGAAAACTGAGGAGGTCCGCCACCAGCCGGGATAAAGCCGGACTTTGT
TCCGAATCTGACCTCCCTATCGAGATGAATTGCCTAGAATCGTCGGATTT
TCCCAACCAGCCGGGTTGCCCAGACAGCCGGCCTGAATCCTCACAACTTG
CACTACGAACATTTACACTAACATCCTCGTTGCTGAGAGACTCCTAACCG
TACAGCCGGTCCGGTAGGAGAATCTATCACAACCGCAATTACGAGCCCTT
TATTGAAAGGGGAAACGGAATATTTGGATACCCAAAGTTGCTCATTGCTA
TCAATTCTAGCCATTAGTAATTCTGGAAAACTTGTTATTGGTTAGTACCT
CCTTTACAGTTCACTCCATCCTTGCCAATTCTTCTACATGCCAATTGAGG
GGTACCAAATATCATTTCTTCATAACTTAAAATTTCTTGCCTTCTTCCCA
AGTCTTGACCAGCTATCTGTACAACTGATGCTCTACTTGTGATAATGAct
caataaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039583XLOC_039583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063175-exon-scaffold_383-1491911889:181852..182358TCONS_00063175-exon-scaffold_383-1491911889:181852..182358Clytia hemisphaericaexon
TCONS_00063175-exon-scaffold_383-1510915933:181852..182358TCONS_00063175-exon-scaffold_383-1510915933:181852..182358Clytia hemisphaericaexon
TCONS_00063175-exon-scaffold_383-1575043694:181852..182358TCONS_00063175-exon-scaffold_383-1575043694:181852..182358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:181852..182358 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.683782	0.780805	0.351639	0.694337	0	0	1.17971	0.525621	0.926461	0.869452	1.02988	1.22491	2.69591	1.52837	1.80904	4.23968	3.58051	5.49882	0.817789	1.41802	1.95381	1.53338	0.299854	1.17129	1.43504	3.04494	0.33727	0	0.231102	0.264867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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