TCONS_00063173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063173
Unique NameTCONS_00063173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063173 ID=TCONS_00063173|Name=TCONS_00063173|organism=Clytia hemisphaerica|type=transcript|length=375bp
tctgagtatgataatctacataaaatttcgcttccaacggtaccaagaaa
gtttacgcaaaatttttttctacgttcacccctgttttattgtatttgtG
CCAGACTAGCATTNCATTTCGATATAAAATGCCTTGAAAAGTGCTATCCT
TGCCATGGTAGGTGTCTTTCGAAACACTCAAATATGTATGcccctgtctc
aaaaatctGGGGGGGGGATTTCCCAACAAACACATCTCTGGAAACCACAA
GCAATTAAACAGTGTCATCAATGATATGAAATGGGTCACGTGCAAGGCAA
AAGCACATGGGGATAGtgctgactttcaaagactttgaatagcTTTGATA
GGTTTTTAGTGTAGCTGATGACCAG
Run BLAST on NCBI

transcript from alignment at scaffold_383:177951..178325

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063173 ID=TCONS_00063173|Name=TCONS_00063173|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at scaffold_383:177951..178325 (Clytia hemisphaerica)
CTGGTCATCAGCTACACTAAAAACCTATCAAAgctattcaaagtctttga
aagtcagcaCTATCCCCATGTGCTTTTGCCTTGCACGTGACCCATTTCAT
ATCATTGATGACACTGTTTAATTGCTTGTGGTTTCCAGAGATGTGTTTGT
TGGGAAATCCCCCCCCCagatttttgagacaggggCATACATATTTGAGT
GTTTCGAAAGACACCTACCATGGCAAGGATAGCACTTTTCAAGGCATTTT
ATATCGAAATGNAATGCTAGTCTGGCacaaatacaataaaacaggggtga
acgtagaaaaaaattttgcgtaaactttcttggtaccgttggaagcgaaa
ttttatgtagattatcatactcaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039581XLOC_039581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063173-exon-scaffold_383-1491911889:177951..178325TCONS_00063173-exon-scaffold_383-1491911889:177951..178325Clytia hemisphaericaexon
TCONS_00063173-exon-scaffold_383-1510915933:177951..178325TCONS_00063173-exon-scaffold_383-1510915933:177951..178325Clytia hemisphaericaexon
TCONS_00063173-exon-scaffold_383-1575043694:177951..178325TCONS_00063173-exon-scaffold_383-1575043694:177951..178325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:177951..178325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213721	0	1.20993	0.476847	0	0.455503	0.274773	0.257239	0.360198	0.288712	0	0	0.284279	0.305567	0.139394	0.130236	0.164446	0.332572	0.243359	0.260302	0	0.687489	0	0.457537	3.02222	1.22874	0.33316	0.364175	0.308201	0.241684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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