TCONS_00063172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063172
Unique NameTCONS_00063172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063172 ID=TCONS_00063172|Name=TCONS_00063172|organism=Clytia hemisphaerica|type=transcript|length=611bp
GGGGCActaattgaaagcgtctatattGCGAAAATGGGCCTCAAAGTCAT
ATCatactagcgtcccgccaaaattaatatcaaagattaatgctgggAAA
GGGCTTTACCCTTTACAGGCTAgttctaaagctctaaaacagcatctaat
aacatgaaaaccagaataagATTCTTCGGCCTTCTTTAAAAGTTTAGTAA
CCGCTTGGGAACAAAGTTTTGTAAACGTTCAAAATACGATATTTGACACT
CATATAACATTCCAAACCCCGAAATTTTTTATCTGTAAGATAGGATCCAT
CTAAATGATATCAAGGACGAAATATAATATTTCTTATAATCTTTCCAAAG
GACGTAATGTAAATGGTGTAATAGAAGTGTGATTACTAACGTAATAGTTG
GGTACTCCCCGTTCTTTGAAATCACTTAAGATAAATGTTTTCAAAGAACG
AGCAATACACTATTAATAAGAATAACGTATTAGATGTGTATTCCCCGTTC
TTCGAAATCACTCGATCAAAACGGCGATTCGGTATGTACCGTATCTAACC
TTTTTATAGGCGAAAAATTGCGATCCGGTACGCACCGTCCGGTACTAAAC
TTAAAGAAGgc
Run BLAST on NCBI

transcript from alignment at scaffold_383:139563..140173

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063172 ID=TCONS_00063172|Name=TCONS_00063172|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_383:139563..140173 (Clytia hemisphaerica)
gcCTTCTTTAAGTTTAGTACCGGACGGTGCGTACCGGATCGCAATTTTTC
GCCTATAAAAAGGTTAGATACGGTACATACCGAATCGCCGTTTTGATCGA
GTGATTTCGAAGAACGGGGAATACACATCTAATACGTTATTCTTATTAAT
AGTGTATTGCTCGTTCTTTGAAAACATTTATCTTAAGTGATTTCAAAGAA
CGGGGAGTACCCAACTATTACGTTAGTAATCACACTTCTATTACACCATT
TACATTACGTCCTTTGGAAAGATTATAAGAAATATTATATTTCGTCCTTG
ATATCATTTAGATGGATCCTATCTTACAGATAAAAAATTTCGGGGTTTGG
AATGTTATATGAGTGTCAAATATCGTATTTTGAACGTTTACAAAACTTTG
TTCCCAAGCGGTTACTAAACTTTTAAAGAAGGCCGAAGAATcttattctg
gttttcatgttattagatgctgttttagagctttagaacTAGCCTGTAAA
GGGTAAAGCCCTTTcccagcattaatctttgatattaattttggcgggac
gctagtatGATATGACTTTGAGGCCCATTTTCGCaatatagacgctttca
attagTGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039580XLOC_039580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063172-exon-scaffold_383-1491911889:139563..140173TCONS_00063172-exon-scaffold_383-1491911889:139563..140173Clytia hemisphaericaexon
TCONS_00063172-exon-scaffold_383-1510915933:139563..140173TCONS_00063172-exon-scaffold_383-1510915933:139563..140173Clytia hemisphaericaexon
TCONS_00063172-exon-scaffold_383-1575043694:139563..140173TCONS_00063172-exon-scaffold_383-1575043694:139563..140173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:139563..140173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0989863	1.07325	0.376548	0.341738	0.213618	0.0744565	0	0.268874	0.353793	0.235298	0.308234	0.10066	0.323107	0.199802	0.136394	0.281445	0.294512	0	0.376662	0.202379	0.370248	0	0.16913	0.485837	0.129754	0.491503	0.200301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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