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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063155 ID=TCONS_00063155|Name=TCONS_00063155|organism=Clytia hemisphaerica|type=transcript|length=811bp
ATGTTAATTCAGAGAACACCTAATTGTATGgtgtttatattatatttttg
agagtatcttaagtaaaatttaatAATGTAACCCCCTGACCAGATGCCAG
ATTCGCTTtacgaaatcaaaacattgaatacCAGTTTTCAATTTTGTGGT
TTCTTTGACTTTGAGTGTTAAAGTTGGAGTGGTGGAAGTGATAAGCTGAT
CTGGAGTCTGGTGTAAGAAAAGTGGAAAGGAGAAACATAATTCAACCACA
AAATCATGATGTGTCGGGATGCTGTATCATAACATAAACTGCACGAAACC
ATTTCTCGTCAAGTAAATCAAGAGTAAGGTTAAATGACTTTATCAAGCAC
TGAAACTGTACAACTCTCTGCACCATAAAGAACCTACACTACATGATGTG
ACAGACAAAACGAGAAAGGGAACACCATGAACTGACACGATTTTTGAAGA
AAGCTGATCGACTTATGATCCTGAAATCGAGTTATTTGGCAAGTGACGGT
TACtgatttctttgatgttttgagTGTTTGTTTCAAGAGCTAAAAGTTGC
TTGAAATAGGATACTCATCTTGGAATTTTGATAAAGAAAGTTGGACCAAA
GTTTAACTTATTTGACTAATACTCTTAAGTTTTTGCCCTCATACATTGTA
TACAGAGCATTTgtattttttctgtatttttttacCTTGTAATTTAGATT
ATCTAAATATTAAATTTACTTTATCTTATTTAATATGAATTTTTAGTTCT
TCTAAAGATGAAATAGATCAGTAACATGAAATGTAAACTAAAAAGTAACC
TTTGTGTCTTC Run BLAST on NCBI transcript from alignment at scaffold_383:183597..185735+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063155 ID=TCONS_00063155|Name=TCONS_00063155|organism=Clytia hemisphaerica|type=transcript|length=2139bp|location=Sequence derived from alignment at scaffold_383:183597..185735+ (Clytia hemisphaerica)
ATGTTAATTCAGAGAACACCTAATTGTATGgtgtttatattatatttttg
agagtatcttaagtaaaatttaatAATGTAACCCCCTGACCAGATGCCAG
ATTCGCTTtacgaaatcaaaacattgaatacCAGTTTTCAATTTTGTGGT
TTCTTTGACTTTGAGTGTTAAAGTTGGAGTGGTGGAAGTGATAAGCTGAT
CTGGAGTCTGGTGTAAGAAAAGTGGAAAGGAGAAACATAATTCAACCACA
AAATCATGATGTGTAAGTATTACTTCACCCATTTATATCGACAAATGAGT
CTAGTTAGTGCTATTTCTATCTATCCTAAACTAAGGGTCGATCAGACAAC
ACtaatttaaggatttttttgtatctttttgtttctttaatttgCCTTTG
CGATTTGTCATGTCATTCACCCAGATCAGGGGTATATTAtctactttttt
tttacttttNATCAGACAACACtaatttaaggatttttttgtatcttttt
gtttctttaatttgCCTTTGCGATTTGTCATGTCATTCACCCAGATCAgg
gttttttttacttttttgtaaatgtTGTTTTCCTTTGCTGTTCATTTGTT
GTCAAAATATTTGACTCTTTTGTCTTTCTACACTACAGGTCGGGATGCTG
TATCATAACATAAACTGCACGAAACCATTTCTCGTCAAGTAAATCAAGAG
TAAGGTAAGGGAATTATCTGCTTATTTGTAtgctattttttttaaaagaa
ctataAGCTGGATAATTTGCTATATATGTAgatatttcaagttttttttg
agcagtgaaatgtttttggcaaagctttcttctcaatttttgaCTATTCT
ATGATTAAAATTCATGATTATCTTTGTTTGTGAATGAATAATGGAGCAAT
ATACAtcagttttgtttatttctgTACAGGTTAAATGACTTTATCAAGCA
CTGAAACTGTACAACTCTCTGCACCATAAAGAACCTACACTACATGATGT
GACAGACAAAACGAGAAAGGTATTTATCAcagaattcaattcaatttttt
caactaTTCCTAGTCCATTTGCTTTACAAGGTAACCTTTTCTCTCGAAAC
TAGAGATCAAATGTATATAAAGTGATTTTACTAAACTGTTGTTTTATAGC
CAATGTTTTGTTAATTTCCCGGAGGGGGCACTTAGTCAAAATTGGGCATG
GGGACCTTCTGCTGGGCAGGGTCCCTTTTTTTATACTCTGAAGATATCTA
ACAGGgtgcaaaattttctaattttcaagatgagtTTCTGATAGGGTCGA
tttatattttgattattttggacaattttcacggtggaaatgagaaaatt
taaaacttcttcggctacttttattaatttttgccactCCATGGTGAAAA
TGGgagatcttttaattttttgttctgaCAGGGTTCCAATTTTGCCAAAA
GTTCACATCTGACAGGATCAACTTTTCAAACTCNatgagaaaatttaaaa
aattttcggctacttttattaatttttgcccctccagggtgaaaatggga
gatcttttaattttttgttctgaCAAGGTTCCAATTTTGGCAAAAGTTCA
CATCTGACAGGatcaacttttcaaactccagtggtacttccccgtcggcc
gtcaaggtcagagCCCTTGGGTTAATTTCGTGATAAGATTCATATTTACT
TTTGATAGTTTGACCATATTATtatcgattttcaatttttctccaGGGAA
CACCATGAACTGACACGATTTTTGAAGAAAGCTGATCGACTTATGATCCT
GAAATCGAGTTATTTGGCAAGTGACGGTTACtgatttctttgatgttttg
agTGTTTGTTTCAAGAGCTAAAAGTTGCTTGAAATAGGATACTCATCTTG
GAATTTTGATAAAGAAAGTTGGACCAAAGTTTAACTTATTTGACTAATAC
TCTTAAGTTTTTGCCCTCATACATTGTATACAGAGCATTTgtattttttc
tgtatttttttacCTTGTAATTTAGATTATCTAAATATTAAATTTACTTT
ATCTTATTTAATATGAATTTTTAGTTCTTCTAAAGATGAAATAGATCAGT
AACATGAAATGTAAACTAAAAAGTAACCTTTGTGTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063155-exon-scaffold_383-1491911889:183597..183858 | TCONS_00063155-exon-scaffold_383-1491911889:183597..183858 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1510915933:183597..183858 | TCONS_00063155-exon-scaffold_383-1510915933:183597..183858 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1575043694:183597..183858 | TCONS_00063155-exon-scaffold_383-1575043694:183597..183858 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1491911889:184235..184300 | TCONS_00063155-exon-scaffold_383-1491911889:184235..184300 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1510915933:184235..184300 | TCONS_00063155-exon-scaffold_383-1510915933:184235..184300 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1575043694:184235..184300 | TCONS_00063155-exon-scaffold_383-1575043694:184235..184300 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1491911889:184526..184615 | TCONS_00063155-exon-scaffold_383-1491911889:184526..184615 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1510915933:184526..184615 | TCONS_00063155-exon-scaffold_383-1510915933:184526..184615 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1575043694:184526..184615 | TCONS_00063155-exon-scaffold_383-1575043694:184526..184615 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1491911889:185343..185735 | TCONS_00063155-exon-scaffold_383-1491911889:185343..185735 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1510915933:185343..185735 | TCONS_00063155-exon-scaffold_383-1510915933:185343..185735 | Clytia hemisphaerica | exon |
| TCONS_00063155-exon-scaffold_383-1575043694:185343..185735 | TCONS_00063155-exon-scaffold_383-1575043694:185343..185735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_383 | supercontig | scaffold_383:183597..185735 + |
Blast
The following BLAST results are available for this feature:
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