TCONS_00063150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063150
Unique NameTCONS_00063150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063150 ID=TCONS_00063150|Name=TCONS_00063150|organism=Clytia hemisphaerica|type=transcript|length=347bp
CCGTCGGCAGCAAAATTCACTTTTAACTACGTAACATTCCAATGCTATTT
ATTTACAATGTTCGATGTTTAATGTTTTTCTGGTATTTTTCCCTGTTTgg
gaaaaacttaattttgattGACTTACTTTTTCATCCAAAGAGGCATTGGA
GGATCATTGGGACCTTTATGATACAATCGCATGATATAACACAACACAAC
GATCATGATCACCATCTCAATCATCGAAGCACTAAAGAAAATCCCAACCA
AAGGAATGACGTCACTGGTGGCCGGAATGATATCTGCAACAACCAACATG
AAAACCGTCATTGCCAATAGCAACGTGATAGCCAATGAAATTCGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_382:118575..118921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063150 ID=TCONS_00063150|Name=TCONS_00063150|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_382:118575..118921 (Clytia hemisphaerica)
GAACGAATTTCATTGGCTATCACGTTGCTATTGGCAATGACGGTTTTCAT
GTTGGTTGTTGCAGATATCATTCCGGCCACCAGTGACGTCATTCCTTTGG
TTGGGATTTTCTTTAGTGCTTCGATGATTGAGATGGTGATCATGATCGTT
GTGTTGTGTTATATCATGCGATTGTATCATAAAGGTCCCAATGATCCTCC
AATGCCTCTTTGGATGAAAAAGTAAGTCaatcaaaattaagtttttcccA
AACAGGGAAAAATACCAGAAAAACATTAAACATCGAACATTGTAAATAAA
TAGCATTGGAATGTTACGTAGTTAAAAGTGAATTTTGCTGCCGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039564XLOC_039564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063150-exon-scaffold_382-1491911889:118575..118921TCONS_00063150-exon-scaffold_382-1491911889:118575..118921Clytia hemisphaericaexon
TCONS_00063150-exon-scaffold_382-1510915933:118575..118921TCONS_00063150-exon-scaffold_382-1510915933:118575..118921Clytia hemisphaericaexon
TCONS_00063150-exon-scaffold_382-1575043694:118575..118921TCONS_00063150-exon-scaffold_382-1575043694:118575..118921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_382supercontigscaffold_382:118575..118921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.250698	0	0	0.346693	0	0	0	0	0	0	0	2.57287	3.61612	0	0	1.00417	0.593433	7.64433	9.96215	0.295646	0	0.655546	0.559846	0.27602	0.739024	0.433886	0.705513	0	0
Blast
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BLAST of TCONS_00063150 vs. Swiss-Prot (Human)
Match: CRFM7 (CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.099e-16
Identity = 33/73 (45.21%), Postives = 55/73 (75.34%), Query Frame = -1 
Query:  129 ERISLAITLLLAMTVFMLVVADIIPATSDVIPLVGIFFSASMIEMVIMIVVLCYIMRLYHKGPNDPPMPLWMK 347
            E+ISL IT+LL++TVFML+VA+I+PATSD +PL+  +F+++MI + + +VV   +++ +H  P+   MP W +
Sbjct:  170 EKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTR 242
The following BLAST results are available for this feature:
BLAST of TCONS_00063150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRFM76.099e-1645.21CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHR... [more]
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