|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063145 ID=TCONS_00063145|Name=TCONS_00063145|organism=Clytia hemisphaerica|type=transcript|length=379bp
TGATCTTTAACTCTTACTACATCAATAATCTGACTGAGGGTCATTCCGAA
CTTCACGATGACCGGGCTGGAATCATTTTGAACCGGACGTTCTGCAGGAT
TGTATCGACTGAACAATGACGTCAACAAGTTTTCTTCGTATTTGCTGCAC
ATCGCACCTAAGGAGGGAGTGGCATAGGAGGATCGTTGGGGCCTTTATGA
TACAATCGCATGATATAACACAACACAACGATCATGATCACCATCTCAAT
CATCGAAGCAGTAAAAAAGACACCGACAAGGGGTACAACATCACTTGTGG
CAGGGATGATCTCAGCAACGACCAACATGAAGACTGTCATGGCCAGGAGT
AAAGTGATAGCCAATGAAACACGTTCACC Run BLAST on NCBI transcript from alignment at scaffold_382:109087..112043- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063145 ID=TCONS_00063145|Name=TCONS_00063145|organism=Clytia hemisphaerica|type=transcript|length=2957bp|location=Sequence derived from alignment at scaffold_382:109087..112043- (Clytia hemisphaerica)
TGATCTTTAACTCTTACTACATCAATAATCTGACTGAGGGTCATTCCGAA
CTTCACGATGACCGGGCTGGAATCATTTTGAACCGGACGTTCTGCAGGAT
TGTATCGACTGAACAATGACGTCAACAAGTTTTCTTCGTATTTGCTGCAC
ATCGCACCTAAGGAGGGGTATGTGAACTATCGTAACTGTTCTTATTTCCT
CTAATCGCACATGTTGAGAACTTTTGATAACCGACACAAGCCGGGAAAAA
ATGAAAAGACCAGGAACCCTTAGACAGACATTTATTATGTTTTTGAAAAA
GTTTGTTCATAGATTTTTTAAACCAGCTATTCAGGGGATAGATCACATCC
CCTGAACTATCTGGCCATCGCAAGTGTGCAACAATTTGTTGTTTGTTTCA
ATTTTCATAAAAAATAAATTTTGAAGATCGAACTTTAGGACTAAAATCAA
AGTCAGTTGAAATAAAATAAAGCGTTTTAATTTCTTTCCAATATGGAAAA
ACCTTGTATTAAAAAAAAGTCAGAAAACTAAAAGATTACCTTACCTTGTA
AAATGCTTGCAATCAGAAAACCTGTATAAAGTTTTGTAAGTGACATAATT
TTGGAGCAGGTTTTCGACCACGCATACAAGTATCTGATAAAGTGGAAATA
CACTAAAGAGGTCGAATTGTATTTATGTTCGTACTAAGTCTTAAAGAATG
CAAGNCTACCAAGCCATAAAAAATTGATTAGGCCCATGTTCAATGTTTTT
CATTGACTTTCAGCAAGTTTTATTGACTGTCAAGAGCAAATTATTGACAA
AAAGTATTTTACATCCACTGTCAATATTTCCCTTTTTTAAAGTCAACGTT
TTGTATTGACTGTCAATATAAAGTAATGAACAGTCAATGCAAAAAATTGA
CTGTTAATATTGACGGTCAATATATTCTATTAGTTTTCAAGAAAATTGGT
TGACAGTCAATGTAAAATATTTTTTGTCAATAATTTGCATTCGACAGTCA
ATGAAAAACATTGAACATGGGCCTAATCAATGTTCTTTGACCTAGTAGTG
ATACAAGTATCTGATAAAGTGGAAATACACTAAAGAGGTCGAATTGTATT
TATGTTCGTACTAAGTCTTAAAGAATGCAAGGGAAACGAAATTTCAAAGT
CACCAAAATGTTCCAAATGAAGCCTCAAATTTATGATGACTTTTTATCAT
TCTTTTTGATATAGAAAAAAAAATTACAATATTCTTTAAACTTGCAAAGT
ACAATTAAAACTTGACCAAAACTGAATAAGAAAAATATCTATAAAATGTC
TTTCCGAGCGGACAAAAAGTCTAGAGAAAAATAAAAAAAATATTCGAACT
AAAGTCTGTCTCAAAATAATTTGCAGTTGGAGAAAAAAATGGCTGTAACT
TCTGATAGAATTCGAATCAAGTTGCGATTTTGTGCTCGTTAAAAAGATAT
TCGTGAGTGGAATATTATGAAGTAAAAAAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNACTACATAACTACCAGATGTTGAAAT
TTCCATCTTAAAATGATGAGATCGTACCAATTTAACTGACATAACCAGGT
GACCGCAGGAAACATGCTAATAAAGTCACAATGTATACCAAGAAAAAGAT
GACCAATAGACAGCGATCAATAGTCATCGCTACCGTGCGCCATTCATTCT
TAACCTCATCTTCCTCATCCATGGTTCGGAGGCGCTCGATAAAGACGTCT
AATTTACTGACCACCAGTTGAGCTTCAGTTAACCTTCCAGAAGGCGCCAT
ATAGCCGACGTCTCCACATTTAGAGGCGTTTAGATTACACAGTGCTTTCT
TTTTCCAGTTTTCCTTATTGTACTCGTTCGAGTTACGGTTGTACTTGTTG
AGTAAGGTCATCTGTTCGTTGGGTGTGGCATTGTTGTTAAATGCATTTCG
ATGTGAACTGTTGAATGTGTTGTTGAGATTGGATGATCGCGATTTGTTGA
TGTTCTTTTCACGTGCACGAATACCGACCAAGAAGGATAACCAGTTCAAG
ATATATCTGTAAAAAGTGAAATTTAGTGAAATAAATAATCCTTTGTTTAA
CTGTACCAAATTGCGTTATTCCACTGACTCGTCGCCTTGTGTTACCTTTG
AAATAACGAAGAATCCGTAAAAGTGTATAGTTCTTCCCCCATCAAAACGG
TTACTCTAATAAATTACTTTTCGAAATCACCACTAGTCAAATTAAAGGAA
TAGCCACCCCATTCTAATTTGAAAAAATCTTACACCTAAATGAAATTCAG
GGTTTTTTCATATTTAACTTACTGTAATTTGCACACTCACTTTAGCATAG
AGACAGGAAGGAGTTCTTTTGATAAAGACTTACTTTTTCATCCAGAGTGG
CATAGGAGGATCGTTGGGGCCTTTATGATACAATCGCATGATATAACACA
ACACAACGATCATGATCACCATCTCAATCATCGAAGCAGTAAAAAAGACA
CCGACAAGGGGTACAACATCACTTGTGGCAGGGATGATCTCAGCAACGAC
CAACATGAAGACTGTCATGGCCAGGAGTAAAGTGATAGCCAATGAAACAC
GTTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063145-exon-scaffold_382-1575043694:111877..112043 | TCONS_00063145-exon-scaffold_382-1575043694:111877..112043 | Clytia hemisphaerica | exon |
| TCONS_00063145-exon-scaffold_382-1575043694:109087..109298 | TCONS_00063145-exon-scaffold_382-1575043694:109087..109298 | Clytia hemisphaerica | exon |
| TCONS_00063145-exon-scaffold_382-1510915933:111877..112043 | TCONS_00063145-exon-scaffold_382-1510915933:111877..112043 | Clytia hemisphaerica | exon |
| TCONS_00063145-exon-scaffold_382-1510915933:109087..109298 | TCONS_00063145-exon-scaffold_382-1510915933:109087..109298 | Clytia hemisphaerica | exon |
| TCONS_00063145-exon-scaffold_382-1491911889:111877..112043 | TCONS_00063145-exon-scaffold_382-1491911889:111877..112043 | Clytia hemisphaerica | exon |
| TCONS_00063145-exon-scaffold_382-1491911889:109087..109298 | TCONS_00063145-exon-scaffold_382-1491911889:109087..109298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_382 | supercontig | scaffold_382:109087..112043 - |
Blast
The following BLAST results are available for this feature:
|
