TCONS_00063139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063139
Unique NameTCONS_00063139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063139 ID=TCONS_00063139|Name=TCONS_00063139|organism=Clytia hemisphaerica|type=transcript|length=710bp
NTTTGACGTTGGCCCCAAATTTGGGCTGCATAAGAAAGATGACAATGGAA
GAGAGAAAAGTATAATGATGTTAAGGTTTTTTTGTTGACATAATGTCGAA
GTTTGCTCAGAGCCCCATTGGctctttttaatttgttacaTACAAATACA
ACGTGATGTTTCAAGTTCAGATGCTCGTCAATATACACGCCAAGATATTT
TACAACTTTGCTTGGCCTAAGCCGATGaccattgattttaatttttaaat
cgtAGTTGATTTTATTTCTGACTGGACGGAAGATCATAAGCTCAGTCTTG
CTGGTGTTCAGAGATATTTTGTTTGCCTTCAGCCAATTCATCAATAGTTT
TAGATCAATATTGGCTTGCTTTGAAATTGGTTTTAGAGAttcgtttgaaa
aaaataacatagtgtcgtcagcaaaaagATTGACCAATGAATATCGAAGT
GCAATGTGGAGATCATTCacataaagaagaaaaagtaaagGGCCAAGGAC
AGAGCCTTGCGGGACACCATGTTTCATGGGTTTTGATCTTGAGTTCTTAC
CAGATACTGACACGAATTGTGATCTACCAGAAAGAAAAGAACGAAACCAG
TCAAGAGCTTTGTCACGAATGCCATAAAAATCGAGTTTTGACAGTAGAAT
TGAGTGATCGACGGTATCAAAGGCTTTTTGCAAATCGATAAAGATAGAAC
ATCCATACTC
Run BLAST on NCBI

protein sequence of TCONS_00063139-protein

>TCONS_00063139-protein ID=TCONS_00063139-protein|Name=TCONS_00063139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
EYGCSIFIDLQKAFDTVDHSILLSKLDFYGIRDKALDWFRSFLSGRSQFV
SVSGKNSRSKPMKHGVPQGSVLGPLLFLLYVNDLHIALRYSLVNLFADDT
MLFFSNESLKPISKQANIDLKLLMNWLKANKISLNTSKTELMIFRPVRNK
INYDLKIKINGHRLRPSKVVKYLGVYIDEHLNLKHHVVFVCNKLKRANGA
LSKLRHYVNKKTLTSLYFSLFHCHLSYAAQIWGQRQ
Run BLAST on NCBI

transcript from alignment at scaffold_381:38572..39281

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063139 ID=TCONS_00063139|Name=TCONS_00063139|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at scaffold_381:38572..39281 (Clytia hemisphaerica)
GAGTATGGATGTTCTATCTTTATCGATTTGCAAAAAGCCTTTGATACCGT
CGATCACTCAATTCTACTGTCAAAACTCGATTTTTATGGCATTCGTGACA
AAGCTCTTGACTGGTTTCGTTCTTTTCTTTCTGGTAGATCACAATTCGTG
TCAGTATCTGGTAAGAACTCAAGATCAAAACCCATGAAACATGGTGTCCC
GCAAGGCTCTGTCCTTGGCCctttactttttcttctttatgtGAATGATC
TCCACATTGCACTTCGATATTCATTGGTCAATctttttgctgacgacact
atgttatttttttcaaacgaaTCTCTAAAACCAATTTCAAAGCAAGCCAA
TATTGATCTAAAACTATTGATGAATTGGCTGAAGGCAAACAAAATATCTC
TGAACACCAGCAAGACTGAGCTTATGATCTTCCGTCCAGTCAGAAATAAA
ATCAACTacgatttaaaaattaaaatcaatggtCATCGGCTTAGGCCAAG
CAAAGTTGTAAAATATCTTGGCGTGTATATTGACGAGCATCTGAACTTGA
AACATCACGTTGTATTTGTAtgtaacaaattaaaaagagCCAATGGGGCT
CTGAGCAAACTTCGACATTATGTCAACAAAAAAACCTTAACATCATTATA
CTTTTCTCTCTTCCATTGTCATCTTTCTTATGCAGCCCAAATTTGGGGCC
AACGTCAAAN

Coding sequence (CDS) from alignment at scaffold_381:38572..39281

>TCONS_00063139 ID=TCONS_00063139|Name=TCONS_00063139|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_381:38572..39281 (Clytia hemisphaerica)
GAGTATGGATGTTCTATCTTTATCGATTTGCAAAAAGCCTTTGATACCGT
CGATCACTCAATTCTACTGTCAAAACTCGATTTTTATGGCATTCGTGACA
AAGCTCTTGACTGGTTTCGTTCTTTTCTTTCTGGTAGATCACAATTCGTG
TCAGTATCTGGTAAGAACTCAAGATCAAAACCCATGAAACATGGTGTCCC
GCAAGGCTCTGTCCTTGGCCctttactttttcttctttatgtGAATGATC
TCCACATTGCACTTCGATATTCATTGGTCAATctttttgctgacgacact
atgttatttttttcaaacgaaTCTCTAAAACCAATTTCAAAGCAAGCCAA
TATTGATCTAAAACTATTGATGAATTGGCTGAAGGCAAACAAAATATCTC
TGAACACCAGCAAGACTGAGCTTATGATCTTCCGTCCAGTCAGAAATAAA
ATCAACTacgatttaaaaattaaaatcaatggtCATCGGCTTAGGCCAAG
CAAAGTTGTAAAATATCTTGGCGTGTATATTGACGAGCATCTGAACTTGA
AACATCACGTTGTATTTGTAtgtaacaaattaaaaagagCCAATGGGGCT
CTGAGCAAACTTCGACATTATGTCAACAAAAAAACCTTAACATCATTATA
CTTTTCTCTCTTCCATTGTCATCTTTCTTATGCAGCCCAAATTTGGGGCC
AACGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039556XLOC_039556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063139-exon-scaffold_381-1491911889:38572..39281TCONS_00063139-exon-scaffold_381-1491911889:38572..39281Clytia hemisphaericaexon
TCONS_00063139-exon-scaffold_381-1510915933:38572..39281TCONS_00063139-exon-scaffold_381-1510915933:38572..39281Clytia hemisphaericaexon
TCONS_00063139-exon-scaffold_381-1575043694:38572..39281TCONS_00063139-exon-scaffold_381-1575043694:38572..39281Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063139-proteinTCONS_00063139-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_381supercontigscaffold_381:38572..39281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59247	2.60469	3.5231	2.46866	0.381986	0.572494	0.546254	0.562804	0.477388	0.443491	0.502207	0.551928	0.49016	0.586917	0.392488	0.560976	0.626118	0.67736	0.169562	0.315087	0.929457	0.641504	0.747887	0.482771	0.684267	0.610692	0.758631	0.878112	1.49124	1.82341
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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