TCONS_00063136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063136
Unique NameTCONS_00063136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063136 ID=TCONS_00063136|Name=TCONS_00063136|organism=Clytia hemisphaerica|type=transcript|length=220bp
TAAGTAAAGTTTATCCTTCAGCGCAGTCAGTGATGAATCCGATCTGACCG
ATGGTGtcttttcagccatttttgagatgaataaaatgaatcatgaaatt
tttgttatctAAAGAGATGGGTGAAACACCATGTTTGAACTATGAGCCTA
TATCTTGGATATCTCTCTCATATCAAAACTGTTCAATGCGATCGAAAAAA
TCTTTCCCAGCTGAATTCNN
Run BLAST on NCBI

transcript from alignment at scaffold_381:15080..15299

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063136 ID=TCONS_00063136|Name=TCONS_00063136|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at scaffold_381:15080..15299 (Clytia hemisphaerica)
NNGAATTCAGCTGGGAAAGATTTTTTCGATCGCATTGAACAGTTTTGATA
TGAGAGAGATATCCAAGATATAGGCTCATAGTTCAAACATGGTGTTTCAC
CCATCTCTTTagataacaaaaatttcatgattcattttattcatctcaaa
aatggctgaaaagaCACCATCGGTCAGATCGGATTCATCACTGACTGCGC
TGAAGGATAAACTTTACTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039553XLOC_039553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063136-exon-scaffold_381-1491911889:15080..15299TCONS_00063136-exon-scaffold_381-1491911889:15080..15299Clytia hemisphaericaexon
TCONS_00063136-exon-scaffold_381-1510915933:15080..15299TCONS_00063136-exon-scaffold_381-1510915933:15080..15299Clytia hemisphaericaexon
TCONS_00063136-exon-scaffold_381-1575043694:15080..15299TCONS_00063136-exon-scaffold_381-1575043694:15080..15299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_381supercontigscaffold_381:15080..15299 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00482	1.82413	0	0	1.79777	6.59171	2.78533	7.97044	10.6108	0	6.06551	13.9995	3.54773	8.41803	5.13442	7.08779	2.78612	4.71345	6.23872	9.51841	10.0763	0.769043	6.33913	8.62233	0	0	9.19764	4.86595	8.23771	1.70258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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