TCONS_00063134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063134
Unique NameTCONS_00063134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063134 ID=TCONS_00063134|Name=TCONS_00063134|organism=Clytia hemisphaerica|type=transcript|length=521bp
GGAAGATCTATAAAAAATGAACACAGTACTATCTTTTGTTCGTAAAACTA
AGATATATTTCAGAAGATTTTACTACttgataaatttgataaaataaaca
ataattacATATAGGCTTGCTATAAATTTTTAGCGGTGAGAAAAGGTATT
TCAAGTTTTGGCAGGAGTTCGAAAAGCATGGCAAATCGTGTACAGGTTGT
ACAGAGTGGTGACAAAAAGACGTTTTTACCATATGATTATAATGAAAAAG
TATTCAAATGACAAAGACACGCACTGAATTTCTATccacttctttttttt
caattatgaaaaaaattgagccaGTAATATATATTTTGCATTCTTGTTAG
TTTGGACGATTTTAAGAAAGATATCGGAGTTTGCGAATTTGCAGTCTACC
TTTTTCAAAACTGGGTGGAGCCGTGCTTGTAATAAAGATTAGTAATCTAC
ctaataggccatttcacagtcaaAATGGAAAATGGTTGTCAGGAGTAGTT
GCCATCTAGTAACGACTTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_381:9941..10461

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063134 ID=TCONS_00063134|Name=TCONS_00063134|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at scaffold_381:9941..10461 (Clytia hemisphaerica)
CGGAAGTCGTTACTAGATGGCAACTACTCCTGACAACCATTTTCCATTtt
gactgtgaaatggcctattagGTAGATTACTAATCTTTATTACAAGCACG
GCTCCACCCAGTTTTGAAAAAGGTAGACTGCAAATTCGCAAACTCCGATA
TCTTTCTTAAAATCGTCCAAACTAACAAGAATGCAAAATATATATTACtg
gctcaatttttttcataattgaaaaaaaagaagtggATAGAAATTCAGTG
CGTGTCTTTGTCATTTGAATACTTTTTCATTATAATCATATGGTAAAAAC
GTCTTTTTGTCACCACTCTGTACAACCTGTACACGATTTGCCATGCTTTT
CGAACTCCTGCCAAAACTTGAAATACCTTTTCTCACCGCTAAAAATTTAT
AGCAAGCCTATATgtaattattgtttattttatcaaatttatcaaGTAGT
AAAATCTTCTGAAATATATCTTAGTTTTACGAACAAAAGATAGTACTGTG
TTCATTTTTTATAGATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039551XLOC_039551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063134-exon-scaffold_381-1491911889:9941..10461TCONS_00063134-exon-scaffold_381-1491911889:9941..10461Clytia hemisphaericaexon
TCONS_00063134-exon-scaffold_381-1510915933:9941..10461TCONS_00063134-exon-scaffold_381-1510915933:9941..10461Clytia hemisphaericaexon
TCONS_00063134-exon-scaffold_381-1575043694:9941..10461TCONS_00063134-exon-scaffold_381-1575043694:9941..10461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_381supercontigscaffold_381:9941..10461 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227421	0.332658	0	0.251922	0.306691	0	0.292386	0.136864	0	0.237382	0.115204	0.378654	0.453753	0	0.322843	0.277168	0	0	0.241754	0.126489	0.439768	0.321755	0.391135	0.237066	0	0	0	0.332804	2.65041	3.08611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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