TCONS_00063133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063133
Unique NameTCONS_00063133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063133 ID=TCONS_00063133|Name=TCONS_00063133|organism=Clytia hemisphaerica|type=transcript|length=478bp
ATTCGAGATGAAGTATTACAAAGAGATTTTCAACGAAATCCATGATTCCT
TGATGAGGGACACAGTGCATATTTTCATCGCAAAATCTAAACAACTTACT
TCTCAAAAGCAATTCACGAGAGCTTTGAACATTTTGAACACGTATCTCAA
GATTCTGACGTCATACGCTACACGAGCGAGTCCTGGTTGCTCAACATCTA
AGGTGAAAAATATCATGCATCATGACTCTTGTGGACCGAATTGAAATTTG
CTGAAGAAGACCCTGATAAAGCTAATACATCAGAGACGATGCGACGATCA
AAAGCTTGCATACAGCATAGTAATCAAAGTAAGATATCCCTAATCATACT
GTTATGACAATGGGGTTCACTGTTGGCGGTGGAGTGGATTATGCTCAGAA
TTATGGCAGAATTAGAAAGCTCCCCccacaacgttctttcaacgtttatc
ttaTGTTCACAAAGTCAATATAACGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_381:25049..26899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063133 ID=TCONS_00063133|Name=TCONS_00063133|organism=Clytia hemisphaerica|type=transcript|length=1851bp|location=Sequence derived from alignment at scaffold_381:25049..26899- (Clytia hemisphaerica)
ATTCGAGATGAAGTATTACAAAGAGATTTTCAACGAAATCCATGATTCCT
TGATGAGGGACACAGTGCATATTTTCATCGCAAAATCTAAACAACTTACT
TCTCAAAAGGTGAACATTTCTTTCTTGTCATTTTTTTTTCCTTAATTGTA
TTAAATGTTCAGCCCACTTCGAGCCCTTGCTATTGCTAGTTTTCAATAAT
AAGTCTCAGCGTTTTATAAGTCATTCCGGCTGATCTGATACTATGAGACC
TGTATCTTATGGGAGATGTCGGAAATTTAGGTAGTAGAAGAATACTTCGA
CTAGGCACAATTTAGTCACGTAGAGACTTTTCCCCATCTAATATTTTAAC
TTTTCTTTGAGTGCAAGCAGTAAGGGGTCGCTTCCATAGGACATTTTGGC
CGATGCAATGGTGTGTGAACAGCAAATCCTCTTAGTTTTAAGACTTAAAG
TTACGCTTTGTTTAGCGAGTAAAAATAATTGAAATCGATCATCGATTGAA
AACCTATTCATAACTTGATAGTGTCAATATTTTACACGGATAGCCCAGTA
ATCTAAGACTTTAAGACAGTCTGGAGCTAGCGCCTTAGACATCTTACTTA
CTCATTGCTCTNAATCTAGGACTTTAAGACAGTCTGGAGCTAGCGCCTTA
GGCATCTTACTTACTCATTGCTCTTACCTCGCTCTCTTTCTCGTATTGCA
GCAATTCACGAGAGCTTTGAACATTTTGAACACGTATCTCAAGATTCTGA
CGTCATACGCTACACGAGCGAGTCCTGGTTGCTCAACATCTAAGGTGAAA
AATATCATGCATCATGACTCTTGTGGACCGAATTGAAATTTGCTGAAGAA
GACCCTGATAAGTAAAGGATCTATTTGCTTTTCTACAACGGGGCGTTAAA
GGGAAGAGTTGGCGAGGATTGTATTTCTTCTAATTTTCTAGAAGTATCAG
GGAGATTTGTTAAGATAAGAGGATGTGCCTTCTTTTTTGGACCAAATTAA
AATTCACTGTGGGTTTACTTTCTCTAGACTTTTTCTTAGATTAAAAATGA
AGTAAAGGTGAAAGAAAGAGTTTGTTAATTCTGCTTTATCAGCATCAGAG
ACGCGCTTACTTTGTTTTTTTATCTATCGTCAAAAACAATACTCTGTTTA
AAAGATGTATCTCCACTTTTTGAGAGTGTTTGTTTTGGATTGTCCACATA
GCGAAAAGTTTGACTTTATAGACCTTCAAAAGTACAACGCACCGAATCTA
AAGCGATTCCATCCTCCTCTGCGTTAATTTCTCTTTCCCGTTAATTAATT
ACATAACAAAAGAAAGTTAATGGCTTTCACGGTTTTCCAATCATTTCGAA
ATGAACTGTGCTATCAATTTTGGAATGGCTAATTGATCTTTATATAATTG
AAGCGGCCGTAGCACAAAGCTAGAGCATCCAATTACCGTGCTCAATTTTT
TGGTTTCAAACCACTTCGGTACTTGATTCCTCTCTGCTTGAAGTTCAGCA
GTCAAAGAACACTTTAAGGTAAGTGGAGAAATCTAGAGAAAGGGGTGATC
CTTTCCTACCTTCGGATAGACAGCTAAAGAGAAAGAAAGCCTGTTATCCT
CGTGAATATTTCGTATGTATTTCCCTGAATTTTCATCCATAGAGCTAATA
CATCAGAGACGATGCGACGATCAAAAGCTTGCATACAGCATAGTAATCAA
AGTAAGATATCCCTAATCATACTGTTATGACAATGGGGTTCACTGTTGGC
GGTGGAGTGGATTATGCTCAGAATTATGGCAGAATTAGAAAGCTCCCCCC
ACAACGTTCTTTCAACGTTTATCTTATGTTCACAAAGTCAATATAACGTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039550XLOC_039550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063133-exon-scaffold_381-1575043694:26791..26899TCONS_00063133-exon-scaffold_381-1575043694:26791..26899Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1575043694:26039..26198TCONS_00063133-exon-scaffold_381-1575043694:26039..26198Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1575043694:25049..25257TCONS_00063133-exon-scaffold_381-1575043694:25049..25257Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1510915933:26791..26899TCONS_00063133-exon-scaffold_381-1510915933:26791..26899Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1510915933:26039..26198TCONS_00063133-exon-scaffold_381-1510915933:26039..26198Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1510915933:25049..25257TCONS_00063133-exon-scaffold_381-1510915933:25049..25257Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1491911889:26791..26899TCONS_00063133-exon-scaffold_381-1491911889:26791..26899Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1491911889:26039..26198TCONS_00063133-exon-scaffold_381-1491911889:26039..26198Clytia hemisphaericaexon
TCONS_00063133-exon-scaffold_381-1491911889:25049..25257TCONS_00063133-exon-scaffold_381-1491911889:25049..25257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_381supercontigscaffold_381:25049..26899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.91031	1.76704	1.39696	1.83877	0	0.281091	0.847811	0.160846	1.19115	1.37363	0.670558	1.79591	1.16524	1.80736	2.48725	4.04291	1.03799	2.52577	3.64676	3.31246	4.16953	3.30821	5.9118	6.59958	0.143794	0	3.6054	6.45008	3.14356	3.50489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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