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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063125 ID=TCONS_00063125|Name=TCONS_00063125|organism=Clytia hemisphaerica|type=transcript|length=1015bp
TCGGGCGTGACGGACGTGACGGAATTGATGGAAAAGATGGAAAACAAGGA
CCAGCAGAAAAACCTGGTAAAAATGGGGCTGATGGGATTGATGGAATAAA
CGGTGTAGACGGAAAAGAGGGAAAAGATGGGATCCACGGAAAGGACGGAA
AAGATTGCAAAATGGGAATGCGTGGAAGAGATGGGTTAAACGGAACAAAT
GGAAAAGATGGAATGGATGGAAAAGACGGAAAAGACGGCTTAAATGGAAT
TGACGGAAAAGACGGCTTGAACGGAACAAATGGAAGGGATGGAGTCGATG
GAAGGGACGGGTTAAACGATTCAAATGGAATTGATGGATTAGACGGTATA
AACGGAGCAAATGGAATGAATGGAAAAGACTCACCGAAGAGACATTGGAA
AGAATGTGCTTGGGACAAAAGCTTTTATAGTGAACTAGATGCAGGTCTTC
TTAAGATTTGCACGTTCAGAAAGAAATCGATTGAAACATATTTAAGGGTA
GAGGTGATTTCAAATCTAAGAATATGGAATTGTGATGATTGCTGCAGCCG
ATGGTTTGTCACTTTCAATGGACAAGAATGTACACCCGTGCCGATAGACG
GTACAGTCTATATGAAATTTGGTAAAGGAAATCGTGAAAAGAATCTTCAC
CGACCACAAGTTATTACTGGACGTTGCAAGATTTCGAAAATTGGTTATAT
CAATGTGGGTTTCAATGTTGGTGAATGTGCAGGTGCAGGTAAAAATACCG
CTGATGCGTTTACAGGGTGGCAACAGGCAACACGCATTTACGTCGAAGAA
ATGGAGGGGCCACAGTCTGATCttgtttcataaaaaaatcaatacTAGTT
TTCTCTAGCGggttttatactttttttatttgtaatttAAGGGGAaagat
cattgaaatttttttttttaatgaaattatttGTTTTCAAGATGTAACTT
CTATAtcattttatcatgtttttatttagttttatcatttgtattaaaaa
aagcTTATTTCAGGG Run BLAST on NCBI protein sequence of TCONS_00063125-protein >TCONS_00063125-protein ID=TCONS_00063125-protein|Name=TCONS_00063125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
GRDGRDGIDGKDGKQGPAEKPGKNGADGIDGINGVDGKEGKDGIHGKDGK
DCKMGMRGRDGLNGTNGKDGMDGKDGKDGLNGIDGKDGLNGTNGRDGVDG
RDGLNDSNGIDGLDGINGANGMNGKDSPKRHWKECAWDKSFYSELDAGLL
KICTFRKKSIETYLRVEVISNLRIWNCDDCCSRWFVTFNGQECTPVPIDG
TVYMKFGKGNREKNLHRPQVITGRCKISKIGYINVGFNVGECAGAGKNTA
DAFTGWQQATRIYVEEMEGPQSDLVS Run BLAST on NCBI transcript from alignment at scaffold_380:59104..60349+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063125 ID=TCONS_00063125|Name=TCONS_00063125|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at scaffold_380:59104..60349+ (Clytia hemisphaerica)
TCGGGCGTGACGGACGTGACGGAATTGATGGAAAAGATGGAAAACAAGGA
CCAGCAGAAAAACCTGGTAAAAATGGGGCTGATGGGATTGATGGAATAAA
CGGTGTAGACGGAAAAGAGGGAAAAGATGGGATCCACGGAAAGGACGGAA
AAGATTGCAAAATGGGAATGCGTGGAAGAGATGGGTTAAACGGAACAAAT
GGAAAAGATGGAATGGATGGAAAAGACGGAAAAGACGGCTTAAATGGAAT
TGACGGAAAAGACGGCTTGAACGGAACAAATGGAAGGGATGGAGTCGATG
GAAGGGACGGGTTAAACGATTCAAATGGAATTGATGGATTAGACGGTATA
AACGGAGCAAATGGAATGAATGGAAAAGACTCACCGAAGAGACATTGGAA
AGAATGTGCTTGGGACAAAAGCTTTTATAGTGAACTAGATGCAGGTCTTC
TTAAGGTATGTAAAGCACTTTAAAATTGAATTCATGGTAGATAAAACTGT
GTTGTGTTTTTGCTTGATAAGATCTCTGATAACTAAAAatattagaattt
caaaaattcagtaTTTCAAACATTTCGAAAAACATTTCGAGGCGATCAGT
TTTTCTGGGTGAGAAAAACATTTGCTTTCCATTTTGGAACTTAGAAATCG
TTTGAttgtgaataatttttttctcccgtTTTACAGATTTGCACGTTCAG
AAAGAAATCGATTGAAACATATTTAAGGGTAGAGGTGATTTCAAATCTAA
GAATATGGAATTGTGATGATTGCTGCAGCCGATGGTTTGTCACTTTCAAT
GGACAAGAATGTACACCCGTGCCGATAGACGGTACAGTCTATATGAAATT
TGGTAAAGGAAATCGTGAAAAGAATCTTCACCGACCACAAGTTATTACTG
GACGTTGCAAGATTTCGAAAATTGGTTATATCAATGTGGGTTTCAATGTT
GGTGAATGTGCAGGTGCAGGTAAAAATACCGCTGATGCGTTTACAGGGTG
GCAACAGGCAACACGCATTTACGTCGAAGAAATGGAGGGGCCACAGTCTG
ATCttgtttcataaaaaaatcaatacTAGTTTTCTCTAGCGggttttata
ctttttttatttgtaatttAAGGGGAaagatcattgaaattttttttttt
aatgaaattatttGTTTTCAAGATGTAACTTCTATAtcattttatcatgt
ttttatttagttttatcatttgtattaaaaaaagcTTATTTCAGGG Coding sequence (CDS) from alignment at scaffold_380:59104..60349+ >TCONS_00063125 ID=TCONS_00063125|Name=TCONS_00063125|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_380:59104..60349+ (Clytia hemisphaerica)
GGGCGTGACGGACGTGACGGAATTGATGGAAAAGATGGAAAACAAGGACC
AGCAGAAAAACCTGGTAAAAATGGGGCTGATGGGATTGATGGAATAAACG
GTGTAGACGGAAAAGAGGGAAAAGATGGGATCCACGGAAAGGACGGAAAA
GATTGCAAAATGGGAATGCGTGGAAGAGATGGGTTAAACGGAACAAATGG
AAAAGATGGAATGGATGGAAAAGACGGAAAAGACGGCTTAAATGGAATTG
ACGGAAAAGACGGCTTGAACGGAACAAATGGAAGGGATGGAGTCGATGGA
AGGGACGGGTTAAACGATTCAAATGGAATTGATGGATTAGACGGTATAAA
CGGAGCAAATGGAATGAATGGAAAAGACTCACCGAAGAGACATTGGAAAG
AATGTGCTTGGGACAAAAGCTTTTATAGTGAACTAGATGCAGGTCTTCTT
AAGATTTGCACGTTCAGAAAGAAATCGATTGAAACATATTTAAGGGTAGA
GGTGATTTCAAATCTAAGAATATGGAATTGTGATGATTGCTGCAGCCGAT
GGTTTGTCACTTTCAATGGACAAGAATGTACACCCGTGCCGATAGACGGT
ACAGTCTATATGAAATTTGGTAAAGGAAATCGTGAAAAGAATCTTCACCG
ACCACAAGTTATTACTGGACGTTGCAAGATTTCGAAAATTGGTTATATCA
ATGTGGGTTTCAATGTTGGTGAATGTGCAGGTGCAGGTAAAAATACCGCT
GATGCGTTTACAGGGTGGCAACAGGCAACACGCATTTACGTCGAAGAAAT
GGAGGGGCCACAGTCTGATCttgtttcataaGGGCGTGACGGACGTGACG
GAATTGATGGAAAAGATGGAAAACAAGGACCAGCAGAAAAACCTGGTAAA
AATGGGGCTGATGGGATTGATGGAATAAACGGTGTAGACGGAAAAGAGGG
AAAAGATGGGATCCACGGAAAGGACGGAAAAGATTGCAAAATGGGAATGC
GTGGAAGAGATGGGTTAAACGGAACAAATGGAAAAGATGGAATGGATGGA
AAAGACGGAAAAGACGGCTTAAATGGAATTGACGGAAAAGACGGCTTGAA
CGGAACAAATGGAAGGGATGGAGTCGATGGAAGGGACGGGTTAAACGATT
CAAATGGAATTGATGGATTAGACGGTATAAACGGAGCAAATGGAATGAAT
GGAAAAGACTCACCGAAGAGACATTGGAAAGAATGTGCTTGGGACAAAAG
CTTTTATAGTGAACTAGATGCAGGTCTTCTTAAGATTTGCACGTTCAGAA
AGAAATCGATTGAAACATATTTAAGGGTAGAGGTGATTTCAAATCTAAGA
ATATGGAATTGTGATGATTGCTGCAGCCGATGGTTTGTCACTTTCAATGG
ACAAGAATGTACACCCGTGCCGATAGACGGTACAGTCTATATGAAATTTG
GTAAAGGAAATCGTGAAAAGAATCTTCACCGACCACAAGTTATTACTGGA
CGTTGCAAGATTTCGAAAATTGGTTATATCAATGTGGGTTTCAATGTTGG
TGAATGTGCAGGTGCAGGTAAAAATACCGCTGATGCGTTTACAGGGTGGC
AACAGGCAACACGCATTTACGTCGAAGAAATGGAGGGGCCACAGTCTGAT
Cttgtttcataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063125-exon-scaffold_380-1491911889:59104..59558 | TCONS_00063125-exon-scaffold_380-1491911889:59104..59558 | Clytia hemisphaerica | exon |
| TCONS_00063125-exon-scaffold_380-1510915933:59104..59558 | TCONS_00063125-exon-scaffold_380-1510915933:59104..59558 | Clytia hemisphaerica | exon |
| TCONS_00063125-exon-scaffold_380-1575043694:59104..59558 | TCONS_00063125-exon-scaffold_380-1575043694:59104..59558 | Clytia hemisphaerica | exon |
| TCONS_00063125-exon-scaffold_380-1491911889:59790..60349 | TCONS_00063125-exon-scaffold_380-1491911889:59790..60349 | Clytia hemisphaerica | exon |
| TCONS_00063125-exon-scaffold_380-1510915933:59790..60349 | TCONS_00063125-exon-scaffold_380-1510915933:59790..60349 | Clytia hemisphaerica | exon |
| TCONS_00063125-exon-scaffold_380-1575043694:59790..60349 | TCONS_00063125-exon-scaffold_380-1575043694:59790..60349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_380 | supercontig | scaffold_380:59104..60349 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
BLAST of TCONS_00063125 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.053e-28 Identity = 69/188 (36.70%), Postives = 97/188 (51.60%), Query Frame = 3
Query: 279 NGRDGVDGRDGLNDSNGIDGLDGINGANGMNG------KDSPKRHW----KECAWDKSFYSELDAGLLKICTFRKKSIETYLRVEVISNLRIWNCDDCCSRWFVTFNGQECT-PVPIDGTVYMKFGKG--NREKNLHRPQVITGRCKISKIGYINVGFNVGECAGAGKNTADAFTGWQQATRIYVEEM 803
G GV GRDG +NGI G GI G +G G ++S + W K+C+W Y +D G + CTF K + LRV +LR+ + CC RW+ TFNG EC+ P+PI+ +Y+ G N N+HR + G C+ G ++V VG C+ K DA TGW +RI +EE+
Sbjct: 57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYG-IDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK--GDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
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