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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063106 ID=TCONS_00063106|Name=TCONS_00063106|organism=Clytia hemisphaerica|type=transcript|length=1850bp
ATAGATCAAAATCTTGTGATTCATTAGAGGCGTGTAGTGTAACTTACAAC
GTGTTTAGAGAttcacaaaagaaaaagttcttCATTCTTCACTACGAGAA
AAGAagtcaaatttgaaatcaagaCATAGAAGAAAGAACGTTTCCGTTAG
AAATCTACGAGCATGATGCATATATCATTATTCTTTTGTTTGATAATCGG
TGGTGCACAAGCTTTAACTATCCGAAATAGTTGGAAAGATAATGACGAAA
AATGGGGAGCCATCgttgacaaaattgaaaagGATAACGCACAAGTGAAA
GACGTTTTTCGGGAAACGATGAAAAAACAAGACGAAATTGAAGCAGAGCT
GAATGAACTGGAAAATGTCTTCCAAAAGGATGCCTCGAAATCAGTAAAGG
AAGCTTTGGAACCAGGAAAGGATGCCTTGAAACTAGAAAAGGATGCCTTG
AAACCAGAGAAGCGGTCATCCCTAGAGGGAGAAGCACTGATGATGCATTT
GATTAAGGAGCATGGTGAAACACAGGAAGAAAGAAACAATGGAATTCCAC
ATATTCCAACTGAAGAAGATGACGATGCAGAATTTCATGAAGAGCATGCT
GAAAGTGTTGGAAGTAAAGAAGACTCTGTTGAAGGTGATGAAAAACGTCA
AATCGTCATAGATGAAGAAAGCGAAGACGCAACGGATGGAAATTTTGCTG
AAGAATTGGAAAATGATAATGAGAAAGAAGAAAAAGATGAGGGATTCAGT
CTAGTCAATGATCATGATGATGATAAAGACCACAGTCTAAACAaacacaa
caaggatgagagtaaGAAAGATGGCGGGGAAGCATCGACGGAAGAGATGA
TCATGAAATTATCAAGCGAGGACGATAAACACGAGAGGGAAATCGCACAA
ATGATTGAACAAATGAAAAGAGACTAAGCTCTAGTCTAGACGGTCGACTT
TCTACCTTGTCATCCCTCATTTTTAACGAAAGTCGGCAGAAAATCAACTG
ACGTCAAttcaatgacttctttcaacctttctcaaacaaaaatttcaatt
gcCGACTTTCCATCGACGTTCTGTTGTCTCTCACATTGAACGGAGGCAAg
acagaaagtcggccgtctaaattAGGTCTAAATAAGTGCAACAAGGAAAA
AGATTTGCAAAAgaactattttcaaatttaacaaaTGTTATAACCTTATT
TCCAGCATTAAAATATTTAAGGATTTTGCTTATTTCCAAAGGCCTTTTTT
CCACGCCATAATGTTGTTAAAAGTTAAGCTGTTGTGAATGTACAGTATTG
TATTTTAGGTTTCTTAGAATAATATTGCACAAAGAAAATGTAAGATTTTG
ATTGATCACTTAATTttgcaaaatattataaaagGGCCTTTAACGAAGTA
AAAGTAAGTATATTAATTTGGTGGCTGTCGGCAGAGCTGGAAATGAGGGA
GTCCATCCCCTTGACACTTTGCTCTAGACCTGGAAGTTCGAATGCTAAGA
TGGAGTGTCACACCACTCTCAGCTCCCAATTACTCACCGATCAGATCAGA
TCAGATCAGATTACCAAATATAAGCTACTCATTCACTGAGTTGGTGGTAA
CCAGGGATCAAACCCACAACCCTTTGATTGTAAAGTGAAtgctttttatt
ttaagaaaaatttaaagtcTAGCTATGATAAATGTCTACCCTTTCCACTA
TCATCATGAAAttctctaccgactgagctaccttCTTAACAAAAAATTAC
CTGAACAAGCATAATAAGAACAGAATCCAAACTGCTGAATGTCGCGCGTG
CTTCCACGTAGAAGTTAAGCTGTTGCTCAAAATCTCGCCCATAGTCaacc Run BLAST on NCBI protein sequence of TCONS_00063106-protein >TCONS_00063106-protein ID=TCONS_00063106-protein|Name=TCONS_00063106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MMHISLFFCLIIGGAQALTIRNSWKDNDEKWGAIVDKIEKDNAQVKDVFR
ETMKKQDEIEAELNELENVFQKDASKSVKEALEPGKDALKLEKDALKPEK
RSSLEGEALMMHLIKEHGETQEERNNGIPHIPTEEDDDAEFHEEHAESVG
SKEDSVEGDEKRQIVIDEESEDATDGNFAEELENDNEKEEKDEGFSLVND
HDDDKDHSLNKHNKDESKKDGGEASTEEMIMKLSSEDDKHEREIAQMIEQ
MKRD Run BLAST on NCBI transcript from alignment at scaffold_38:218267..220786- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063106 ID=TCONS_00063106|Name=TCONS_00063106|organism=Clytia hemisphaerica|type=transcript|length=2520bp|location=Sequence derived from alignment at scaffold_38:218267..220786- (Clytia hemisphaerica)
ATAGATCAAAATCTTGTGATTCATTAGAGGCGTGTAGTGTAACTTACAAC
GTGTTTAGAGATTCACAAAAGAAAAAGTTCTTCATTCTTCACTACGAGAA
AAGAAGTCAAATTTGAAATCAAGACATAGAAGAAAGAACGTTTCCGTTAG
AAATCTACGAGCATGATGCATATATCATTATTCTTTTGTTTGATAATCGG
TGGTGCACAAGCTTTAACTATCCGAAATAGTTGGAAAGATAATGACGAAA
AATGGGGAGCCATCGTTGACAAAATTGAAAAGGATAACGCACAAGTGAAA
GACGTTTTTCGGGAAACGATGAAAAAACAAGACGAAATTGAAGCAGAGCT
GAATGAACTGGAAAATGTCTTCCAAAAGGATGCCTCGAAATCAGTAAAGG
AAGCTTTGGAACCAGGAAAGGATGCCTTGAAACTAGAAAAGGATGCCTTG
AAACCAGAGAAGCGGTCATCCCTAGAGGGAGAAGCACTGATGATGCATTT
GATTAAGGTAAGACTTTCATTTTTTATCTCTTAAGTTGAAACACCGAAAA
TATTATGTCCACCAAAAGCGTCGAGTAAAAACTTTTAATACGATCGAAAA
TTTATGAAACACTTTCAGTCCGATGAAATGCGTTATCCAAGAAATATTGT
TGCATCAATTATTTTTTTCATTCCGAATGTTGATTTTCGAGGGAATAAAC
AACATACGCAAATGAATTTCATTATCGTTTTAGGAGCATGGTGAAACACA
GGAAGAAAGAAACAATGGAATTCCACATATTCCAACTGAAGAAGATGACG
ATGCAGAATTTCATGAAGAGCATGCTGAAAGTGTTGGAAGTAAAGAAGAC
TCTGTTGAAGGTGATGAAAAACGTCAAATCGTCATAGATGAAGAAAGCGA
AGACGCAACGGATGGAAATTTTGCTGAAGAATTGGAAAATGATAATGAGA
AAGAAGGTGACTAGACTATTAACTAAATTAAGAACTAGACTATTGTTAAT
ATAGAACCCTAAAACAGAACAGTTTTTTTATAAGAACATCCAAAATTATC
CAAGCCGAATGATCGGATGATCTTGACTTTTTGAGTTTTAGGCCTAAAAT
GTTCCTAAGATGTTCTTATTTTCATTATTTTGTGAGCATTTTTTTTCGCT
TTCCTAAGAAATCTGATGCTGTACAGTCCACAAAGTCTTAATATTTCGGC
CATCGAAGTCTTGTGTTCTTATAAAAAAAGTATAATATATAAATAATACG
TAACTAAAAGCATAACATAAAAAAACTTGTACGTAGTACATAATGCATAT
AACGGTGAGTGTAAAATAAAGACAAATCGAATGATATTATCCTCCAAAGG
CTTTTTCTCAAATCTGTCAAATCTTGTAAATTTATTTTTCCCGTTTCCAG
AAAAAGATGAGGGATTCAGTCTAGTCAATGATCATGATGATGATAAAGAC
CACAGTCTAAACAAACACAACAAGGATGAGAGTAAGAAAGATGGCGGGGA
AGCATCGACGGAAGAGATGATCATGAAATTATCAAGCGAGGACGATAAAC
ACGAGAGGGAAATCGCACAAATGATTGAACAAATGAAAAGAGACTAAGCT
CTAGTCTAGACGGTCGACTTTCTACCTTGTCATCCCTCATTTTTAACGAA
AGTCGGCAGAAAATCAACTGACGTCAATTCAATGACTTCTTTCAACCTTT
CTCAAACAAAAATTTCAATTGCCGACTTTCCATCGACGTTCTGTTGTCTC
TCACATTGAACGGAGGCAAGACAGAAAGTCGGCCGTCTAAATTAGGTCTA
AATAAGTGCAACAAGGAAAAAGATTTGCAAAAGAACTATTTTCAAATTTA
ACAAATGTTATAACCTTATTTCCAGCATTAAAATATTTAAGGATTTTGCT
TATTTCCAAAGGCCTTTTTTCCACGCCATAATGTTGTTAAAAGTTAAGCT
GTTGTGAATGTACAGTATTGTATTTTAGGTTTCTTAGAATAATATTGCAC
AAAGAAAATGTAAGATTTTGATTGATCACTTAATTTTGCAAAATATTATA
AAAGGGCCTTTAACGAAGTAAAAGTAAGTATATTAATTTGGTGGCTGTCG
GCAGAGCTGGAAATGAGGGAGTCCATCCCCTTGACACTTTGCTCTAGACC
TGGAAGTTCGAATGCTAAGATGGAGTGTCACACCACTCTCAGCTCCCAAT
TACTCACCGATCAGATCAGATCAGATCAGATTACCAAATATAAGCTACTC
ATTCACTGAGTTGGTGGTAACCAGGGATCAAACCCACAACCCTTTGATTG
TAAAGTGAATGCTTTTTATTTTAAGAAAAATTTAAAGTCTAGCTATGATA
AATGTCTACCCTTTCCACTATCATCATGAAATTCTCTACCGACTGAGCTA
CCTTCTTAACAAAAAATTACCTGAACAAGCATAATAAGAACAGAATCCAA
ACTGCTGAATGTCGCGCGTGCTTCCACGTAGAAGTTAAGCTGTTGCTCAA
AATCTCGCCCATAGTCAACC Coding sequence (CDS) from alignment at scaffold_38:218267..220786- >TCONS_00063106 ID=TCONS_00063106|Name=TCONS_00063106|organism=Clytia hemisphaerica|type=CDS|length=2295bp|location=Sequence derived from alignment at scaffold_38:218267..220786- (Clytia hemisphaerica)
AAAAAGATGAGGGATTCAGTCTAGTCAATGATCATGATGATGATAAAGAC
CACAGTCTAAACAAACACAACAAGGATGAGAGTAAGAAAGATGGCGGGGA
AGCATCGACGGAAGAGATGATCATGAAATTATCAAGCGAGGACGATAAAC
ACGAGAGGGAAATCGCACAAATGATTGAACAAATGAAAAGAGACTAAGAG
CATGGTGAAACACAGGAAGAAAGAAACAATGGAATTCCACATATTCCAAC
TGAAGAAGATGACGATGCAGAATTTCATGAAGAGCATGCTGAAAGTGTTG
GAAGTAAAGAAGACTCTGTTGAAGGTGATGAAAAACGTCAAATCGTCATA
GATGAAGAAAGCGAAGACGCAACGGATGGAAATTTTGCTGAAGAATTGGA
AAATGATAATGAGAAAGAAGATGATGCATATATCATTATTCTTTTGTTTG
ATAATCGGTGGTGCACAAGCTTTAACTATCCGAAATAGTTGGAAAGATAA
TGACGAAAAATGGGGAGCCATCGTTGACAAAATTGAAAAGGATAACGCAC
AAGTGAAAGACGTTTTTCGGGAAACGATGAAAAAACAAGACGAAATTGAA
GCAGAGCTGAATGAACTGGAAAATGTCTTCCAAAAGGATGCCTCGAAATC
AGTAAAGGAAGCTTTGGAACCAGGAAAGGATGCCTTGAAACTAGAAAAGG
ATGCCTTGAAACCAGAGAAGCGGTCATCCCTAGAGGGAGAAGCACTGATG
ATGCATTTGATTAAGAAAAAGATGAGGGATTCAGTCTAGTCAATGATCAT
GATGATGATAAAGACCACAGTCTAAACAAACACAACAAGGATGAGAGTAA
GAAAGATGGCGGGGAAGCATCGACGGAAGAGATGATCATGAAATTATCAA
GCGAGGACGATAAACACGAGAGGGAAATCGCACAAATGATTGAACAAATG
AAAAGAGACTAAGAGCATGGTGAAACACAGGAAGAAAGAAACAATGGAAT
TCCACATATTCCAACTGAAGAAGATGACGATGCAGAATTTCATGAAGAGC
ATGCTGAAAGTGTTGGAAGTAAAGAAGACTCTGTTGAAGGTGATGAAAAA
CGTCAAATCGTCATAGATGAAGAAAGCGAAGACGCAACGGATGGAAATTT
TGCTGAAGAATTGGAAAATGATAATGAGAAAGAAGATGATGCATATATCA
TTATTCTTTTGTTTGATAATCGGTGGTGCACAAGCTTTAACTATCCGAAA
TAGTTGGAAAGATAATGACGAAAAATGGGGAGCCATCGTTGACAAAATTG
AAAAGGATAACGCACAAGTGAAAGACGTTTTTCGGGAAACGATGAAAAAA
CAAGACGAAATTGAAGCAGAGCTGAATGAACTGGAAAATGTCTTCCAAAA
GGATGCCTCGAAATCAGTAAAGGAAGCTTTGGAACCAGGAAAGGATGCCT
TGAAACTAGAAAAGGATGCCTTGAAACCAGAGAAGCGGTCATCCCTAGAG
GGAGAAGCACTGATGATGCATTTGATTAAGAAAAAGATGAGGGATTCAGT
CTAGTCAATGATCATGATGATGATAAAGACCACAGTCTAAACAAACACAA
CAAGGATGAGAGTAAGAAAGATGGCGGGGAAGCATCGACGGAAGAGATGA
TCATGAAATTATCAAGCGAGGACGATAAACACGAGAGGGAAATCGCACAA
ATGATTGAACAAATGAAAAGAGACTAAGAGCATGGTGAAACACAGGAAGA
AAGAAACAATGGAATTCCACATATTCCAACTGAAGAAGATGACGATGCAG
AATTTCATGAAGAGCATGCTGAAAGTGTTGGAAGTAAAGAAGACTCTGTT
GAAGGTGATGAAAAACGTCAAATCGTCATAGATGAAGAAAGCGAAGACGC
AACGGATGGAAATTTTGCTGAAGAATTGGAAAATGATAATGAGAAAGAAG
ATGATGCATATATCATTATTCTTTTGTTTGATAATCGGTGGTGCACAAGC
TTTAACTATCCGAAATAGTTGGAAAGATAATGACGAAAAATGGGGAGCCA
TCGTTGACAAAATTGAAAAGGATAACGCACAAGTGAAAGACGTTTTTCGG
GAAACGATGAAAAAACAAGACGAAATTGAAGCAGAGCTGAATGAACTGGA
AAATGTCTTCCAAAAGGATGCCTCGAAATCAGTAAAGGAAGCTTTGGAAC
CAGGAAAGGATGCCTTGAAACTAGAAAAGGATGCCTTGAAACCAGAGAAG
CGGTCATCCCTAGAGGGAGAAGCACTGATGATGCATTTGATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063106-exon-scaffold_38-1575043694:220280..220786 | TCONS_00063106-exon-scaffold_38-1575043694:220280..220786 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1575043694:219831..220053 | TCONS_00063106-exon-scaffold_38-1575043694:219831..220053 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1575043694:218267..219386 | TCONS_00063106-exon-scaffold_38-1575043694:218267..219386 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1510915933:220280..220786 | TCONS_00063106-exon-scaffold_38-1510915933:220280..220786 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1510915933:219831..220053 | TCONS_00063106-exon-scaffold_38-1510915933:219831..220053 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1510915933:218267..219386 | TCONS_00063106-exon-scaffold_38-1510915933:218267..219386 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1491911889:220280..220786 | TCONS_00063106-exon-scaffold_38-1491911889:220280..220786 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1491911889:219831..220053 | TCONS_00063106-exon-scaffold_38-1491911889:219831..220053 | Clytia hemisphaerica | exon |
| TCONS_00063106-exon-scaffold_38-1491911889:218267..219386 | TCONS_00063106-exon-scaffold_38-1491911889:218267..219386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:218267..220786 - |
Blast
The following BLAST results are available for this feature:
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