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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063098 ID=TCONS_00063098|Name=TCONS_00063098|organism=Clytia hemisphaerica|type=transcript|length=2374bp
aaaaaaaatcagtacACAAAATAAGaatgcaatgaaaaaaacaGTATGCA
GAATGAAAAGTGATTCAAATTATGAGTAAACAGTAAAAAAAGGTTTAGAC
ATGGAAAATCAGTACACAGCTACCATACTACTTCGACTAAACGCAAGCTG
GGGCGTtcgttaaatttggattttaggaggggACGTTCATTCGAGGGGGA
GTTTATCAAATTATCTTTAGCCAGGGGCACTTtaataaagtaaattttag
ccatattttgtcttttcgttttctttcNGCCAGGGGCACTTtaataaagt
aaattttagccatattttgtcttttcgttttctttcaattcaaatatttc
attttagcTATATGCTAAAATGGGTCAAACTAATTCAAGTCTCTTAGCCT
ACCCCAAAGTTATTAGCcttgttttggcgaaaaactcgtccccaggcccc
actcgggtaagttatggcctGTCCATTCTTTTTGCGTTCGCACACGCGGG
ATTTGTCTTTGAAAAACGCGTTTACTAAGTTCCTTATTCTGATTGGTGGA
TTTTTTGATGACGATGCGTTTTTCATTATGAGATATATCTGTCCTGCCGT
AAACCGACAAATTCGGGAAATCGAACAAGAAGCTTCCTGCAGTTTTCTAT
TTGACTAAAATGGGAGCCGCCATTTTATTTCTTCGAGCTGTTTCAAGAAT
ATCTCAAGAGCAATGTCCTCAAACATCACTTCAACCATCAAGTTTTACAT
CAAATCTAAGGGGTATCAGGCTTTTTTCACTGATGGCTGCCCCTGGTACA
AGCTAGGAAGAGATGACCGACTGATTCTATAATTGAAGTTGAGTTGCCTT
TCTTCAAACGGTAATTGGGATGCTAAATGAATGTTGAACTACAAAACAAG
ATTTAATCGATTCAAACTGGGAAAAAGAAAATCATCTTACAAAAAGGTGT
AAGTGTTTATAATTTGATATTATCTTGTAACATATGCATAGTATGTTGGC
TTTACCCCCTTCACATACGTAAGCTTTTGAAATTACCCCCATCCGGGGGG
GGGGGACAAGGGTTGGCGAATGAGGGGTATGTGCGGACGGGACCTCCGAA
AACCGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTTAGAGA
GACTTTTTGAATTTTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGA
GACTTTATTACAATTTCTTCTCTGGAAATCAAAAAATGTCCTAAAAATCT
TGAATATTCCGGCCCTTTGAGAGACTAATTTAAAACTTTCTGATTTTTCA
AACCCTTAGAGAGACTTTGAAAGGTGAAAAAACCGACCCTTACCGTCCGC
ACATACCCATCATCCATTTTTGCCTAAGTAACCCCCCCCCAGGCCCCTAC
TAGTATCCCCCAGATTGAAGGGTTTATACATGAGCAATTGTTTAAATTAA
GGGATTCTTGGAAAAAGTATATTCAACTTCCTTTTGTGTTTGTTGATGAA
AATACAGAACATCCAGCCAAACTTTCGCTGAAATTTGGTTCTATTGAAAA
ATGTTGATTTGTACTCTCAAGACTCTAATAGACAGGTGGTCTGGAATTTG
TTAATAAAACTAATGGCCAAGGGGTGTTAAAAGAATGTCTCGAGTGGAAA
ATTATACAAAGGCTGCTTATGACCGCACCCTCCCCCTCAGAGCATATGTA
CTTTATACGAATGGTCCTAAAAAATGTCCATGGGTTCTGTTTTCAAATGA
ATTTAGCCATGTCACAAGTGTTCTAGTGGAATATTAAACACTCAGTATGC
TCTAATTTCAAATTTTATTTTCAGGTAAGGAAAGGAGATCCCATTGGAAA
GGAATTGACAtgaattcttatttttctgatCAGGAATGGATTGTAAACAA
TCTAATAGGAAATTTGCCCAATTTATGACCCATTCCCCATTTTTAGGCAA
TATTAGTGTGGTATGTGAGTGGTAAGCAGTCAGATTGAGAATCTGAATTT
TTTAAGATTAGGGGGGTGCCAAGATGGGAAGATCCGACCCATCCACACTA
TGAAATTATGTATGTTATGTAaattttatttctctttttcattctttaga
CCTTAAGGACCGGACTGATTGGATTGGATCGGACAGATTGCTCATCGTCT
TGTGACTTTTCGACGTCTTGTAGCGATCAAATTCGTCAACCTTATAACAT
CAATCCCAATTACTATTGGcatttggattttgaattttgaatttttgtga
agcaccatattttattttaatgtatCAACATCGAACAAATTTAtatgaaa
taataattttcaaaagcattattgaaaaatttgaaactcTTTCTCAGTTC
CTTTTTGCATTATGATAACTGCTG Run BLAST on NCBI transcript from alignment at scaffold_38:309063..312896+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063098 ID=TCONS_00063098|Name=TCONS_00063098|organism=Clytia hemisphaerica|type=transcript|length=3834bp|location=Sequence derived from alignment at scaffold_38:309063..312896+ (Clytia hemisphaerica)
aaaaaaaatcagtacACAAAATAAGaatgcaatgaaaaaaacaGTATGCA
GAATGAAAAGTGATTCAAATTATGAGTAAACAGTAAAAAAAGGTTTAGAC
ATGGAAAATCAGTACACAGCTACCATACTACTTCGACTAAACGCAAGCTG
GGGCGTtcgttaaatttggattttaggaggggACGTTCATTCGAGGGGGA
GTTTATCAAATTATCTTTAGCCAGGGGCACTTtaataaagtaaattttag
ccatattttgtcttttcgttttctttcNGCCAGGGGCACTTtaataaagt
aaattttagccatattttgtcttttcgttttctttcaattcaaatatttc
attttagcTATATGCTAAAATGGGTCAAACTAATTCAAGTCTCTTAGCCT
ACCCCAAAGTTATTAGCcttgttttggcgaaaaactcgtccccaggcccc
actcgggtaagttatggcctGTCCATTCTTTTTGCGTTCGCACACGCGGG
ATTTGTCTTTGAAAAACGCGTTTACTAAGTTCCTTATTCTGATTGGTGGA
TTTTTTGATGACGATGCGTTTTTCATTATGAGATATATCTGTCCTGCCGT
AAACCGACAAATTCGGGAAATCGAACAAGAAGCTTCCTGCAGTTTTCTAT
TTGACTAAAATGGGAGCCGCCATTTTATTTCTTCGAGCTGTTTCAAGAAT
ATCTCAAGAGCAATGTCCTCAAACATCACTTCAACCATCAAGTTTTACAT
CAAATCTAAGGGGTATCAGGTAGGGAGTCATTATTTATGATTTAGAACTT
TAAATTAAAATAAATTTGATACTTTTAGCTGTAAAACGACTAATCAAAGT
TTGGTGCTCGATGTTGTTGTGTTGTAGCCTCAGTTAGATTTCTCTTGGAG
CTTATTCAAATATTTTTTCTTTTCCATCAGACGAAATATAAACCTAGGGT
GGATTGTCCATGTTGTACAATATAGTCACTTTCTTTCTTTTTTTTTGGGA
AACAACACCCAACAAGTGCACAAACAGTTCACCAGTTTATGTGCTTTCAG
AAAAGATGAAATGACTGAAACTATTTTTATACTAGACTGGTTTGGTAAAA
AGATTCCCTTATCATTTCCCTTATTTATCCCTCACTTTTCTCAAAAAAAT
GTATCATCATAGAATAGAGATATTTGCCTATGTTTACAATTTGAAAATAA
GCTTTCATAGTAGACAATTTGATTCCTTGTATATCCACAATAATTAATTA
TTAACAAGTACCGTGAGATCGGGTAACTTGCATCAGTGGAGTAACCTGGC
TGGTCATTAAAATATATTAGAGCTACGAGCAGAGCTGCGTAGTTCATTTG
TTTTGAAATTTTGCCACTTTGATTGGTCAGTCATTTGATGGCCATGCAAG
TTTCCCTCCACTGATGCAAGTTACCCGACTTCAGGGTATATACATTCTCA
GGCGATGTCAACCAACCAATTAATTGGAAGTGAGGCAAAATAATTTGTTT
TTGTTTTTTGAAAATGAAACACTATATTGAAGACAATAGGTATAATCCAA
GGTTTATGTAATCAAATTGATCAAGTAAAAATGTAGTACCTTCTATTAGA
TTCTATAATTGAATTTTAATCTTGCGATTGACTTCAATTAATTTGACAAT
AGAATTATTTGGTTGACATCGCCTTTTGACATCAATTACAATCAATAATA
GATATAGATATAATAATTAAGGTCCAAAACATTGTGACCTAGTCTAAAAC
ACAGTGACTATCGGTTATCAATCGATATAGATCGATTTAATGTAATCAAT
TAATAAACGATATCAGACGATATATAATCAATCATATTGATAGGTATATA
CAATCGCTAATATCGATTTGATCGACAAGTTTGATAAACTTAGAAAAATT
AACTATAGATGAAATGATAAAATAATTAATGTCCAATTGTATTGGGTTGT
AATTGTGTATTGGTTGTTATTTTCAGTTTCGACAAATTTTAATTTTTTTT
GTGTTTCTTTGAGGCTTTTTTCACTGATGGCTGCCCCTGGTACAAGCTAG
GAAGAGATGACCGACTGATTCTATAATTGAAGTTGAGTTGCCTTTCTTCA
AACGGTAATTGGTAGGTAATATTTCTTGTACTTGCACCACTTTTTTAAAA
GCATAAATAAAAAGTAGAAAAATATTATAAATTTAAATCATACTTTTTCT
GACTTGAACAAGCCTTTTTATAGCAAGACAGTTAAGTCAAAAACCCCTAT
CCAAACCTTACCTCAATTAATTTTTTTGTAGAAATTAGAAATGAGATCAT
TAGGTTTCTTTGTTGATATTTTTTTAGGGATGCTAAATGAATGTTGAACT
ACAAAACAAGATTTAATCGATTCAAACTGGGAAAAAGAAAATCATCTTAC
AAAAAGGTGTAAGTGTTTATAATTTGATATTATCTTGTAACATATGCATA
GTATGTTGGCTTTACCCCCTTCACATACGTAAGCTTTTGAAATTACCCCC
ATCCGGGGGGGGGGGACAAGGGTTGGCGAATGAGGGGTATGTGCGGACGG
GACCTCCGAAAACCGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGA
CCCTTAGAGAGACTTTTTGAATTTTTTTTCGATTTTTGAAAAAAGTCATA
CCCTTAGAGAGACTTTATTACAATTTCTTCTCTGGAAATCAAAAAATGTC
CTAAAAATCTTGAATATTCCGGCCCTTTGAGAGACTAATTTAAAACTTTC
TGATTTTTCAAACCCTTAGAGAGACTTTGAAAGGTGAAAAAACCGACCCT
TACCGTCCGCACATACCCATCATCCATTTTTGCCTAAGTAACCCCCCCCC
AGGCCCCTACTAGTATCCCCCAGATTGAAGGGTTTATACATGAGCAATTG
TTTAAATTAAGGGATTCTTGGAAAAAGTATATTCAACTTCCTTTTGTGTT
TGTTGATGAAAATACAGAACATCCAGCCAAACTTTCGCTGAAATTTGGTT
CTATTGAAAAATGTTGATTTGTACTCTCAAGACTCTAATAGACAGGTGGT
CTGGAATTTGTTAATAAAACTAATGGCCAAGGGGTGTTAAAAGAATGTCT
CGAGTGGAAAATTATACAAAGGCTGCTTATGACCGCACCCTCCCCCTCAG
AGCATATGTACTTTATACGAATGGTCCTAAAAAATGTCCATGGGTTCTGT
TTTCAAATGAATTTAGCCATGTCACAAGTGTTCTAGTGGAATATTAAACA
CTCAGTATGCTCTAATTTCAAATTTTATTTTCAGGTAAGGAAAGGAGATC
CCATTGGAAAGGAATTGACAtgaattcttatttttctgatCAGGAATGGA
TTGTAAACAATCTAATAGGAAATTTGCCCAATTTATGACCCATTCCCCAT
TTTTAGGCAATATTAGTGTGGTATGTGAGTGGTAAGCAGTCAGATTGAGA
ATCTGAATTTTTTAAGATTAGGGGGGTGCCAAGATGGGAAGATCCGACCC
ATCCACACTATGAAATTATGTATGTTATGTAaattttatttctctttttc
attctttagaCCTTAAGGACCGGACTGATTGGATTGGATCGGACAGATTG
CTCATCGTCTTGTGACTTTTCGACGTCTTGTAGCGATCAAATTCGTCAAC
CTTATAACATCAATCCCAATTACTATTGGcatttggattttgaattttga
atttttgtgaagcaccatattttattttaatgtatCAACATCGAACAAAT
TTAtatgaaataataattttcaaaagcattattgaaaaatttgaaactcT
TTCTCAGTTCCTTTTTGCATTATGATAACTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063098-exon-scaffold_38-1491911889:309063..309831 | TCONS_00063098-exon-scaffold_38-1491911889:309063..309831 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1510915933:309063..309831 | TCONS_00063098-exon-scaffold_38-1510915933:309063..309831 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1575043694:309063..309831 | TCONS_00063098-exon-scaffold_38-1575043694:309063..309831 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1491911889:311076..311173 | TCONS_00063098-exon-scaffold_38-1491911889:311076..311173 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1510915933:311076..311173 | TCONS_00063098-exon-scaffold_38-1510915933:311076..311173 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1575043694:311076..311173 | TCONS_00063098-exon-scaffold_38-1575043694:311076..311173 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1491911889:311390..312896 | TCONS_00063098-exon-scaffold_38-1491911889:311390..312896 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1510915933:311390..312896 | TCONS_00063098-exon-scaffold_38-1510915933:311390..312896 | Clytia hemisphaerica | exon |
| TCONS_00063098-exon-scaffold_38-1575043694:311390..312896 | TCONS_00063098-exon-scaffold_38-1575043694:311390..312896 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:309063..312896 + |
Blast
The following BLAST results are available for this feature:
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