TCONS_00063095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063095
Unique NameTCONS_00063095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063095 ID=TCONS_00063095|Name=TCONS_00063095|organism=Clytia hemisphaerica|type=transcript|length=2549bp
GCTGGTTATTCAGCCAAAACATTCCAAACTGCGTTACCCTTTATTTTAAA
ACGAAAACAACTGGGTTCTTGATATGATTGTGTATATGATTGTGTATATG
ATTGACGTTTGTTCTGGTTAGCCAATCACCACGCTTAAAAGCTCATTTAC
TACTgattccaaaaataaaaaaagataaaagggcTCGCTCTTGGGTAGAT
ACTCTTATACGGAGTCATGAACTTTAGAGTACATGCGTGTTTGCACGGAG
TAATCAGAATCTCTTCGGAGATTAGCAAGATGGTAAGACAGAAAATGATA
AACTATAcaaaaaaccctaaaattgTACCTATTTAGCGTGTTTCGACAAT
CAAGTCAATAACAAGCAAGAATTATTAGAAACTGGCAACTTTCACTTAAT
CATTCTTTGTATTTGATGAAAGTGCGTTATTAACCAGATTGTTCAATCGC
TGAGTGACATTTTCTTTATTCAGAAACCCTGTATTATGACCTGGTTTCCC
AAAATGTTTGTGTGGTATGTATCTGTGTTAATGCGATTGTagaaaatact
tagaaaacacttcaacattttaaaatacaaaaaaagttcCCGATTTCGAT
ATCGCTGAtgtatgtttgatttttaccgagattagggctttgaaaggtgc
gaaaaactcttcgttttcttcttcgtttaattttttcatttcaatttttc
gatttttaaattctaaaaaagtaggtttaacaggacatataaaaaaagtt
atacattaatctttttaaaatgcagaaattgccatttaagttggtgtaaa
atcgaaaaattgggtatatccagagcccttaaggctAAAGACTCAAGTAC
ACTTTTAAgcattgagttttaagcccaTGAAGGGCTCAAATAAATGATCG
AAAAAGGAAACTTTAGAGTTTGCGTTACATATCGGACGATTGATTGAATC
TTgttatttctttttgttttagcTCCGTtacttttttcgaaatctagaTT
CCTTTCTAGCTCTTCGGGATTCAATGCTCTTGAGCTTCACAATCCATATC
GAACTTGATAGCTACTACGTCTTCATCAGTAAGATTTTCTATCAATTTAT
GATCAAAGGTTTTTGAAACTCCCAAATCTTTACCTTCATCACCAATGGGT
CGTATGAAATTATCTTTCCATTTACCTCCATCATCTGAATTTTGGCTTGA
CTTCTTTCCGATTTCTCTGTTGTTAACAAGAAGTGTCATTGAGTGCGATT
TCCAAGGTATTGgccatttcaaaaaattatcataTGGTCCTTTTAGGTTC
TGAAAGAACACTGACACGTGATTGTCTTGAGCACTGCGATACCCATTTAA
ATAGATATTTAGACGTCCTAAGTACCCATTTACAGTGAGGAAGTTTGGAG
AGGAagttcttttatttgtttttttagccTCTTCAAATTGGAATTTGAAA
TTCTCGATAGTGAAAGAATAAGGGCATTGTGGTAAGCTTAAAATCTGCAA
TGTCAGTTTGTTTTCTTCGGctagttttttgtttaaattatGAACATGAT
CACTCCTTTCCCTCAGTGATCCGTTTATAAATTCATGAGTGTTTTTATCC
GTAATATAAAGCATCATAGATATAATTTCCATTGATTTGTTTAGAGCTTT
CTGTTGTTCAGTTTTGGTTTCATTGACAACTCGGGTGAAATCCTTTTTGG
TTTCTTCAATGGCTTTTTGTTGTTCAGTTTTGGTTTGATTCACAACTCGG
TTGAAATCCTTTTTGGTTTCTTCGATGGCTTTCTCTTGTTCGGTCTTTAT
TTCATTGACAACTCGggtgaaattatttttaatttcttccATGGCTTTTT
GTTGTTCAGTTTTAGTTTGATTGGTAACTCGGGTGAAATCCTTTTTGGTT
TCTTCGATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAACTCGGGT
GATATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGCTCAATTTTAGTTT
CATCGATAACTCGGGTGACATCCTTTTTGGTTTCTTCGATGGCTTTTTGT
TGCTCAATTTTAGTTTCATCGATAACTCGGGTGGCATCCTTTTTGGTTTC
TTCGATGGCTTTTTGTTGCTCAATTTTGGTTTGATTCACAACTCGGTTGA
AATCCTTTTTGGTTTCTTGGATGGCTTTCTCTTGTTCGGTCTTTATTTCA
TTGACAACTCCGATGAAGTCCTTTTTGGTTTCTTCGATGGCTTTGTGGTT
CTCATTGTTTTCATTGGAAGCTCGTTGGAGATCCTTTTTAGCGCCATCGA
CATCTTCTCTCAATCGTTTGATTTCGTCATCTTTTTCCTTCAGTTGGCAG
TCAAACTTTTCAGAcagattttggattttttcatcTCTTTCCTTCTGTTG
GGCATCAAACTCCTTTGTTATCTCTTGAATTTTGAGATCTTTTTCGTGTA
ATTTGTCACTGAATTCTTGTTTGAGGTTTCGAATTTCATGCTTCATTTCA
AGGGAGAAATGTTGATTGATCGCTCGTGATATGTGATTGTACAGTTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_38:275822..279030+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063095 ID=TCONS_00063095|Name=TCONS_00063095|organism=Clytia hemisphaerica|type=transcript|length=3209bp|location=Sequence derived from alignment at scaffold_38:275822..279030+ (Clytia hemisphaerica)
GCTGGTTATTCAGCCAAAACATTCCAAACTGCGTTACCCTTTATTTTAAA
ACGAAAACAACTGGGTTCTTGATATGATTGTGTATATGATTGTGTATATG
ATTGACGTTTGTTCTGGTTAGCCAATCACCACGCTTAAAAGCTCATTTAC
TACTgattccaaaaataaaaaaagataaaagggcTCGCTCTTGGGTAGAT
ACTCTTATACGGAGTCATGAACTTTAGAGTACATGCGTGTTTGCACGGAG
TAATCAGAATCTCTTCGGAGATTAGCAAGATGGTAAGACAGAAAATGATA
AACTATAcaaaaaaccctaaaattgTACCTATTTAGCGTGTTTCGACAAT
CAAGTCAATAACAAGCAAGAATTATTAGAAACTGGCAACTTTCACTTAAT
CATTCTTTGTATTTGATGAAAGTGCGTTATTAACCAGATTGTTCAATCGC
TGAGTGACATTTTCTTTATTCAGAAACCCTGTATTATGACCTGGTTTCCC
AAAATGTTTGTGTGGTATGTATCTGTGTTAATGCGATTGTagaaaatact
tagaaaacacttcaacattttaaaatacaaaaaaagttcCCGATTTCGAT
ATCGCTGAtgtatgtttgatttttaccgagattagggctttgaaaggtgc
gaaaaactcttcgttttcttcttcgtttaattttttcatttcaatttttc
gatttttaaattctaaaaaagtaggtttaacaggacatataaaaaaagtt
atacattaatctttttaaaatgcagaaattgccatttaagttggtgtaaa
atcgaaaaattgggtatatccagagcccttaaggctAAAGACTCAAGTAC
ACTTTTAAgcattgagttttaagcccaTGAAGGGCTCAAATAAATGATCG
AAAAAGGAAACTTTAGAGTTTGCGTTACATATCGGACGATTGATTGAATC
TTgttatttctttttgttttagcTCCGTtacttttttcgaaatctagaTT
CCTTTCTAGCTCTTCGGGATTCAATGCTCTTGAGCTTCACAATCCATATC
GAACTTGATAGCTACTACGTCTTCATCAGTAAGATTTTCTATCAATTTAT
GATCAAAGGTTTTTGAAACTCCCAAATCTTTACCTTCATCACCAATGGGT
CGTATGAAATTATCTTTCCATTTACCTCCATCATCTGAATTTTGGCTTGA
CTTCTTTCCGATTTCTCTGTTGTTAACAAGAAGTGTCATTGAGTGCGATT
TCCAAGGTATTGgccatttcaaaaaattatcataTGGTCCTTTTAGGTTC
TGAAAGAACACTGACACGTGATTGTCTTGAGCACTGCGATACCCATTTAA
ATAGATATTTAGACGTCCTAAGTACCCATTTACAGTGAGGAAGTTTGGAG
AGGAagttcttttatttgtttttttagccTCTTCAAATTGGAATTTGAAA
TTCTCGATAGTGAAAGAATAAGGGCATTGTGGTAAGCTTAAAATCTGCAA
TGTCAGTTTGTTTTCTTCGGctagttttttgtttaaattatGAACATGAT
CACTCCTTTCCCTCAGTGATCCGTTTATAAATTCATGAGTGTTTTTATCC
GTAATATAAAGCATCATAGATATAATTTCCATTGATTTGTTTAGAGCTTT
CTGTTGTTCAGTTTTGGTTTCATTGACAACTCGGGTGAAATCCTTTTTGG
TTTCTTCAATGGCTTTTTGTTGTTCAGTTTTGGTTTGATTCACAACTCGG
TTGAAATCCTTTTTGGTTTCTTCGATGGCTTTCTCTTGTTCGGTCTTTAT
TTCATTGACAACTCGggtgaaattatttttaatttcttccATGGCTTTTT
GTTGTTCAGTTTTAGTTTGATTGGTAACTCGGGTGAAATCCTTCTTGGTT
TCTTCGCTGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAGCTCGGTT
GAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGTTCAGTTTTAGTTT
CATCGATAACTTGGGTGAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGT
TGTTCAGTATTAGTTTCATCGATAACTCGGGTGACATCCTTTTTGGTTTC
TTCGATGGCTTTTTGTTGTTCAGTTTTAGTTTCATCGATAGCTCGGTTGA
AATCCTTTTTGGTTTCTGCGATGGCTTTTTGTTGTTCAATTTTAGTTTCA
TCGATAACTCGGGTGAAATCCTTTTTGGTTTCTTCGATGGCTGTTTGTTG
TTCAGTTTTAGTTTCATCGATAACTCGGGTGAAATCCTTTTTGGTTTCTG
CGATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAACTCGGGTGAAA
TCCTTTTTGGTTTCTTCGATGGCTGTTTGTTGTTCAGTTTTAGTTTCATC
GATAACTCGGGTGAAATCCTTTTTGGTTTCTTCGATAGCTTTTTGTTGTT
CAGTTTTAGTTTCATCGATAACTCGGGTGAAATCCTTTTTGGTTTCTGCG
ATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAACTCGGGTGACATC
CTTTTTGGTTTCTTCGATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGA
TAACTCGGGTGATATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGCTCA
ATTTTAGTTTCATCGATAACTCGGGTGACATCCTTTTTGGTTTCTTCGAT
GGCTTTTTGTTGCTCAATTTTAGTTTCATCGATAACTCGGGTGGCATCCT
TTTTGGTTTCTTCGATGGCTTTTTGTTGCTCAATTTTGGTTTGATTCACA
ACTCGGTTGAAATCCTTTTTGGTTTCTTGGATGGCTTTCTCTTGTTCGGT
CTTTATTTCATTGACAACTCCGATGAAGTCCTTTTTGGTTTCTTCGATGG
CTTTGTGGTTCTCATTGTTTTCATTGGAAGCTCGTTGGAGATCCTTTTTA
GCGCCATCGACATCTTCTCTCAATCGTTTGATTTCGTCATCTTTTTCCTT
CAGTTGGCAGTCAAACTTTTCAGAcagattttggattttttcatcTCTTT
CCTTCTGTTGGGCATCAAACTCCTTTGTTATCTCTTGAATTTTGAGATCT
TTTTCGTGTAATTTGTCACTGAATTCTTGTTTGAGGTTTCGAATTTCATG
CTTCATTTCAAGGGAGAAATGTTGATTGATCGCTCGTGATATGTGATTGT
ACAGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039518XLOC_039518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063095-exon-scaffold_38-1491911889:275822..277708TCONS_00063095-exon-scaffold_38-1491911889:275822..277708Clytia hemisphaericaexon
TCONS_00063095-exon-scaffold_38-1510915933:275822..277708TCONS_00063095-exon-scaffold_38-1510915933:275822..277708Clytia hemisphaericaexon
TCONS_00063095-exon-scaffold_38-1575043694:275822..277708TCONS_00063095-exon-scaffold_38-1575043694:275822..277708Clytia hemisphaericaexon
TCONS_00063095-exon-scaffold_38-1491911889:278369..279030TCONS_00063095-exon-scaffold_38-1491911889:278369..279030Clytia hemisphaericaexon
TCONS_00063095-exon-scaffold_38-1510915933:278369..279030TCONS_00063095-exon-scaffold_38-1510915933:278369..279030Clytia hemisphaericaexon
TCONS_00063095-exon-scaffold_38-1575043694:278369..279030TCONS_00063095-exon-scaffold_38-1575043694:278369..279030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:275822..279030 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2312e-07	0.411277	0.526506	0	0	0	1.14895	1.15246	0.382179	0.690549	0.264816	0.171907	1.63415	1.41279	3.04042	2.61832	0.930703	1.86911	2.50841	3.98837	1.12366	1.43382	1.48637	2.2284	0.16588	0.365609	1.43593e-05	0.602256	5.25338	4.50442
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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