TCONS_00063092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063092
Unique NameTCONS_00063092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063092 ID=TCONS_00063092|Name=TCONS_00063092|organism=Clytia hemisphaerica|type=transcript|length=1349bp
TGTCAATAATGGTTCATCCTCGATacaatgtttcttataaaaacatcaCA
CTTCGATATACTAGCCTGAGGTCATAAATACCTAATTGCCCATTGCAAGG
GCCAATAGGCCTACTCAAAGGTTCAAGTGGGGGATATCTATTGAACAGTC
ATTCATTGAGACTAGAATATCTTAAACTGAGAAACAAAAATAACTGATTA
CGAAAGGGACTATGGATAAGTGGTATAAAAGATGGAAAAACTTCAGTTTA
AAATCATCTTCATCTCTCGAAGCTCATCtacaacaaacaacaaagaagtt
ttatttgaaaaagATATTTCTTAGTCCAACCAATAATCAAAATGGCTGAC
GATGCATTGACGGAAGGAGCTAAACTTTACCAAAAAGAATTAAGATATAT
CACCGAGTTAGAAGGAGATGTGGAAGGAATGAAGTTCACAATCAAAGGTG
AAGGTACTGGTGATGCCACCACTGGAACTGTCAAATCTAAATATATTTGC
ACTACTGGGGATCTTCCCGTTCCTTGGGCTACCATCTTGAGTAGCATATC
TTATGGTGTCTTATGTTTCGCCAAATATCCACGTCACATTGCCGACTTTT
TCAAGAGTACGCAACCTGACGGTTATTCACAAGAGAGAACTATCAAGTTT
GATAACGATGGCCAATATGATGTCAAAGCGAAAGTCACTTATGAAGAAGG
GACGGTCTACAACAGAGTGAATCTGAAAGgtACTGGATTCAAATCAAACG
GCAACATCTTGGGCATGCGCATTCTTTACCATTGTCCTCCTCATTGCGTC
TATGTTCTTCCTGACCGTAAAAATGGTGGCATGAGATTGGAATTTAACAA
GGCTTTTGATGTTATGGGTGGAGGTCATCAATTGGCTCGCCACGCCCAAT
TCAACAAACCATTAGGAGCCTGGGAAGAAGATTACCCTGGGTACCATCAC
ATGTCATTCTGGACATCTTTCGGTAAAGATCCAGATGATGATGACACTGA
CCATTTAACCATCGTTGAAATCATCAAAGCTATCGACTTGGAAACTTACC
GttaaattttgaatcaaattgcTACATAACAACACTTAAAGAAAACCATA
ATGGTATCCACAAGAATTCAAGGACACTACATAAACACTTTACTCACACT
TTCATTGTATAAAATTTTCAGGTTTAGTTAGGTTTTTTTCATAACATTTT
GAGGCAACGGCTGGCATCAATACCATAATTTTGAAGCCATCTTTTTTTGA
AGTTAGCAACACTGTACTAGTATTTATATATTCAAGAAATTTTCCATTCA
AGAAATATCTCACTTTAAATCTTATAAATCAAATTTCTCTGGATTCACC
Run BLAST on NCBI

transcript from alignment at scaffold_38:232496..237071+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063092 ID=TCONS_00063092|Name=TCONS_00063092|organism=Clytia hemisphaerica|type=transcript|length=4576bp|location=Sequence derived from alignment at scaffold_38:232496..237071+ (Clytia hemisphaerica)
TGTCAATAATGGTTCATCCTCGATacaatgtttcttataaaaacatcaCA
CTTCGATATACTAGCCTGAGGTCATAAATACCTAATTGCCCATTGCAAGG
GCCAATAGGCCTACTCAAAGGTTCAAGTGGGGGATATCTATTGAACAGTC
ATTCATTGAGACTAGAATATCTTAAACTGAGAAACAAAAATAACTGATTA
CGAAAGGGACTATGGATAAGTGGTATAAAAGATGGAAAAACTTCAGTTTA
AAATCATCTTCATCTCTCGAAGCTCATCtacaacaaacaacaaagaagtt
ttatttgaaaaaggTAAATTGGtattaaaatttgttttctcATTATACAG
TAGAGTTTTTTATAGGGGTCTGTACATgatacggtgtgacgggattggct
cTTTTtcagtacggtattacgggatttgacgaaaaaaaaacggGGAAACG
GTATTTTGAAATCAGACGGTTACGGTGATTAGCCTTATATTTCTTGTCAA
TATTCCGGGATTTTAACCTCTACAAATTCGTATGAcggttttattatttt
ttgcaaTTCTCGGGATTTCGGGATTCATCAAAAgatttgacgggaaaacg
gcatttcaaacctttttgCGGGGTGATGAGTATTTCTCAgctaaaaatcg
aaaatcgacccttcaaagagaaaaaaattaacacttttgagactttttga
gagaatttttggtgattttttttcacctttttgtctttttaccAGATATT
TCTTAGTCCAACCAATAATCAAAATGGCTGACGATGCATTGACGGAAGGA
GCTAAACTTTACCAAAAAGAATTAAGATATATCACCGAGTTAGAAGGAGA
TGTGGAAGGAATGAAGTTCACAATCAAAGGTGAAGGTACTGGTGATGCCA
CCACTGGAACTGTCAAATCTAAATATATTTGCACTACTGGGGATCTTCCC
GTTCCTTGGGCTACCATCTTGAGTAGCATATCTTATGGTGTCTTGTAagt
aattttgatttgtttttttccaattcttttaaATCAATATCATGATTTAA
ACTTTATATATTAAGTGTGACTGTCTCAAATTGCTCCTATCCAAAAGGAC
TTCGCTGAAAACTTATAGTCTACTACAATAATAGCTATAAAAGGAAAGCT
TTATTTTTAGCTCCTATCAAATTTACACTCTTATACTTAGATGTTTCGCC
AAATATCCACGTCACATTGCCGACTTTTTCAAGAGTACGCAACCTGACGG
TTATTCACAAGAGAGAACTATCAAGTTTGATAACGATGGCCAATATGATG
TCAAAGCGAAAGTCACTTATGAAGAAGGGACGGTCTACAACAGAGTGAAT
CTGAAAGGTACTGTCTATAAGTCGAGTACAAGTTAAGGATTTGATAACGG
GTGGGGCTCAGAGTTAACGACCGATAGGGGAAAGCTGCTGTATTTCGTAA
ATTACAACTATGACCATAACATTTGGCACNAgctaaaaatcgaaaatcga
cccttcaaagagaaaaaaattaacacttttgagactttttgagagaattt
ttggtgattttttttcacctttttgtctttttaccAGATATTTCTTAGTC
CAACCAATAATCAAAATGGCTGACGATGCATTGACGGAAGGAGCTAAACT
TTACCAAAAAGAATTAAGATATATCACCGAGTTAGAAGGAGATGTGGAAG
GAATGAAGTTCACAATCAAAGGTGAAGGTACTGGTGATGCCACCACTGGA
ACTGTCAAATCTAAATATATCTGCACCACTGGTGATCTTCCCGTACCTTG
GGCTACCATCTTGAGTAGCATATCTTATGGTGTCTTGTAagtaattttga
tttgtttttttccaattcttttaaATCAATATCATATGATTTAAACTTTA
TATATTAAGTGTGACTGTCTCAAATTGCTCCTATCCAAAAGGACTTCGCT
GAAAACTTATAGTCTACTACAATAATAGCTATAAAAGGAAAGCTTTATTT
TTAGCTCCTATCAAATTTACACTCTTTTACTTAGATGTTTCGCCAAATAT
CCACGTCACATTGCCGACTTTTTCAAGAGTACGCAACCTGACGGTTATTC
ACAAGAGAGAACTATCAAGTTTGATAACGATGGCCAATATGATGTCAAAG
CGAAAGTCACTTATGAAGAAGGGACGGTCTACAACAGAGTGAATCTGAAA
GGTACTGTCTATAAGTCGAGTACAAGTTAAGGATTTGATAACGGGTGGGG
CTCAGAGTTAACGACCGATAGGGGAAAGCTGCTGTATTTCGTAAATTACA
ACTATGACCATAACATTTGGCACAAATGGGATTTCCctgtaaaattcaaa
aaaaaaatgcaaataccgggtgcgccacaaaaaaaatttcctctttaaga
ttaattttctccaaatctgaaaatttcaaaagaactaTTCCAAGTTCATC
GGAAAGAAGAacgataaacttaaattttgatgggtcattNATTCCAagtt
cattggaaagaagaacgataaacttaaattttgatgggtcatttattaaa
ttcgatttattagatcaaaagttcgaaaacgttgaaattcgacctatcaa
atttttaattcataatttgctatcgcaatagcctttacttgattaaaagc
atttttcagtaattaaacaaataaattttgaaactgaagggttgaaaggg
tttaaaatcttaaaatcactttaatttacttttaccgaaattttccaaag
atttttggttttagattggataaagtctgtgtaaggctggatgtacctcg
aaacccatatttgatgtatttttatgaattttaccagatttgtTGGCCTT
TTTGACGAATTTcctgccttttattgaaatttaaccttcctttatataag
aAAAGGTCATTCAGCCAGCTAATTagctttttagaaaattaattttaaag
agagaaacttttttgtggcacaaCCGGTAGTTCTTAATTGCTTTAACTCA
GGTTTGGAAAGTAAATTTTCatctctgagttttaacatgaggcTTAAGAC
TTAAAATGGGTTTAGGatatctgaggatccaaaagcttgCAAATAGTCCA
ATTAGACTGAGAATATAGACTGGAAACCATTATACTCCTCCCAAATCTTT
GACCAAGTTGACCTGGTTAGGTGCTTGAATAAGGTCAGACTGTTTGGAAA
GCCCTGACTAGTGGAGTAGTCTGAATGACATCGAATGTAGATTATCAACA
TTAATAAATGGGGTCTTTAACTGGCGAGTTCGACCTCCTTTAACAATTGa
atttaatttctttaggtACTGGATTCAAATCAAACGGCAACATCTTGGGC
ATGCGCATTCTTTACCATTGTCCTCCTCATTGCGTCTATGTTCTTCCTGA
CCGTAAAAATGGTGGCATGAGATTGGAATTTAACAAGGTGAGAGCAAATA
CATTAGAAAGATTGCTACAAGCATGGTTAATCTAATTATTGGTACCTACA
TAGTTTTGCCTGGAATGAATTTGtttcttttatcaattttcactttttgg
cCATCTCAAAGACTCTATGAGATCATTTTTTCTTAATTCAGTACATTGAC
GCTccctaattcgatcttcaagggtgattggattttcatcgaataagtga
gcttatcgaataagggagcgtcgtttatgagagtttcttgttgacgggga
ctttaaatttcatcgaataagggagcttatcgaataagggagcgtcgttt
atgagagtttcttgttgacggggactttaaatttcatcgaataagggagc
ctatcgaatagtagaacgtcaaattagagagcgtcaactgtagatatgta
aatattcaaaaattgctttctatttaacgtccaaaagaaatttcttttgc
tatcCATTTTAAATCTTTTAGGCTGAGTTGTCAAAACCCACGCTTGCGTC
AGTTTAGGTTTAAGCGTATACGTCACAAAAAATGGAACCTACTATTCACC
CCTTCCCTTATTTCGGATAATTTTCCCTTTTGTTCTCTCAGACGACTGAT
ATTAAATTGATTGTTCTTTTATGCTCAGGCTTTTGATGTTATGGGTGGAG
GTCATCAATTGGCTCGCCACGCCCAATTCAACAAACCATTAGGAGCCTGG
GAAGAAGATTACCCTGGGTACCATCACATGTCATTCTGGACATCTTTCGG
TAAAGATCCAGATGATGATGACACTGACCATTTAACCATCGTTGAAATCA
TCAAAGCTATCGACTTGGAAACTTACCGttaaattttgaatcaaattgcT
ACATAACAACACTTAAAGAAAACCATAATGGTATCCACAAGAATTCAAGG
ACACTACATAAACACTTTACTCACACTTTCATTGTATAAAATTTTCAGGT
TTAGTTAGGTTTTTTTCATAACATTTTGAGGCAACGGCTGGCATCAATAC
CATAATTTTGAAGCCATCTTTTTTTGAAGTTAGCAACACTGTACTAGTAT
TTATATATTCAAGAAATTTTCCATTCAAGAAATATCTCACTTTAAATCTT
ATAAATCAAATTTCTCTGGATTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039517XLOC_039517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063092-exon-scaffold_38-1491911889:232496..232808TCONS_00063092-exon-scaffold_38-1491911889:232496..232808Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1510915933:232496..232808TCONS_00063092-exon-scaffold_38-1510915933:232496..232808Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1575043694:232496..232808TCONS_00063092-exon-scaffold_38-1575043694:232496..232808Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1491911889:233241..233489TCONS_00063092-exon-scaffold_38-1491911889:233241..233489Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1510915933:233241..233489TCONS_00063092-exon-scaffold_38-1510915933:233241..233489Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1575043694:233241..233489TCONS_00063092-exon-scaffold_38-1575043694:233241..233489Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1491911889:234530..234696TCONS_00063092-exon-scaffold_38-1491911889:234530..234696Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1510915933:234530..234696TCONS_00063092-exon-scaffold_38-1510915933:234530..234696Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1575043694:234530..234696TCONS_00063092-exon-scaffold_38-1575043694:234530..234696Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1491911889:235811..235932TCONS_00063092-exon-scaffold_38-1491911889:235811..235932Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1510915933:235811..235932TCONS_00063092-exon-scaffold_38-1510915933:235811..235932Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1575043694:235811..235932TCONS_00063092-exon-scaffold_38-1575043694:235811..235932Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1491911889:236574..237071TCONS_00063092-exon-scaffold_38-1491911889:236574..237071Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1510915933:236574..237071TCONS_00063092-exon-scaffold_38-1510915933:236574..237071Clytia hemisphaericaexon
TCONS_00063092-exon-scaffold_38-1575043694:236574..237071TCONS_00063092-exon-scaffold_38-1575043694:236574..237071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:232496..237071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.393373	0.554837	0.668405	0.623654	0	0	0.804251	0	0.901966	0.357607	1.29686	1.22699	32.9574	37.9873	33.9605	26.9041	0.775377	0.251631	0.344407	0	2.93044e-08	0	0.0964761	0.0965842	0.827107	1.16692	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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