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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063091 ID=TCONS_00063091|Name=TCONS_00063091|organism=Clytia hemisphaerica|type=transcript|length=1668bp
gatatattggatattttgtctgGGGggagtgaaaaatctgcaaaatttgc
cttgttttacTTTAGGGGCACACTTGCTctgattaggggtgattttgaat
gtccaggtggttaatttccaaaaattgttatatcctacacccccatattc
aaattttttctgaaagaggCCATTATAACGGATCATACGTTTAACATTTA
CACCACGTTTGAGAAACATTTTAGACGTTCGATCAACAAAATAATCTCCA
CAACAAAGCTTGGATTGCAAATAAATTCAAGTTAAAGTTTCAAAATGCGT
TGTTTTTAAAGTGTCAGGCTGTCAATAATGGTTCATCCTCGATacaatgt
ttcttataaaaacatcaCACTTCGATATACTAGCCTGAGGTCATAAATAC
CTAATTGCCCATTGCAAGGGCCAATAGGCCTACTCAAAGGTTCAAGTGGG
GGATATCTATTGAACAGTCATTCATTGAGACTAGAATATCTTAAACTGAG
AAACAAAAATAACTGATTACGAAAGGGACTATGGATAAGTGGTATAAAAG
ATGGAAAAACTTCAGTTTAAAATCATCTTCATCTCTCGAAGCTCATCtac
aacaaacaacaaagaagttttatttgaaaaagATATTTCTTAGTCCAACC
AATAATCAAAATGGCTGACGATGCATTGACGGAAGGAGCTAAACTTTACC
AAAAAGAATTAAGATATATCACCGAGTTAGAAGGAGATGTGGAAGGAATG
AAGTTCACAATCAAAGGTGAAGGTACTGGTGATGCCACCACTGGAACTGT
CAAATCTAAATATATTTGCACTACTGGGGATCTTCCCGTTCCTTGGGCTA
CCATCTTGAGTAGCATATCTTATGGTGTCTTATGTTTCGCCAAATATCCA
CGTCACATTGCCGACTTTTTCAAGAGTACGCAACCTGACGGTTATTCACA
AGAGAGAACTATCAAGTTTGATAACGATGGCCAATATGATGTCAAAGCGA
AAGTCACTTATGAAGAAGGGACGGTCTACAACAGAGTGAATCTGAAAGgt
ACTGGATTCAAATCAAACGGCAACATCTTGGGCATGCGCATTCTTTACCA
TTGTCCTCCTCATTGCGTCTATGTTCTTCCTGACCGTAAAAATGGTGGCA
TGAGATTGGAATTTAACAAGGCTTTTGATGTTATGGGTGGAGGTCATCAA
TTGGCTCGCCACGCCCAATTCAACAAACCATTAGGAGCCTGGGAAGAAGA
TTACCCTGGGTACCATCACATGTCATTCTGGACATCTTTCGGTAAAGATC
CAGATGATGATGACACTGACCATTTAACCATCGTTGAAATCATCAAAGCT
ATCGACTTGGAAACTTACCGttaaattttgaatcaaattgcTACATAACA
ACACTTAAAGAAAACCATAATGGTATCCACAAGAATTCAAGGACACTACA
TAAACACTTTACTCACACTTTCATTGTATAAAATTTTCAGGTTTAGTTAG
GTTTTTTTCATAACATTTTGAGGCAACGGCTGGCATCAATACCATAATTT
TGAAGCCATCTTTTTTTGAAGTTAGCAACACTGTACTAGTATTTATATAT
TCAAGAAATTTTCCATTCAAGAAATATCTCACTTTAAATCTTATAAATCA
AATTTCTCTGGATTCACC Run BLAST on NCBI transcript from alignment at scaffold_38:232177..237071+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063091 ID=TCONS_00063091|Name=TCONS_00063091|organism=Clytia hemisphaerica|type=transcript|length=4895bp|location=Sequence derived from alignment at scaffold_38:232177..237071+ (Clytia hemisphaerica)
gatatattggatattttgtctgGGGggagtgaaaaatctgcaaaatttgc
cttgttttacTTTAGGGGCACACTTGCTctgattaggggtgattttgaat
gtccaggtggttaatttccaaaaattgttatatcctacacccccatattc
aaattttttctgaaagaggCCATTATAACGGATCATACGTTTAACATTTA
CACCACGTTTGAGAAACATTTTAGACGTTCGATCAACAAAATAATCTCCA
CAACAAAGCTTGGATTGCAAATAAATTCAAGTTAAAGTTTCAAAATGCGT
TGTTTTTAAAGTGTCAGGCTGTCAATAATGGTTCATCCTCGATacaatgt
ttcttataaaaacatcaCACTTCGATATACTAGCCTGAGGTCATAAATAC
CTAATTGCCCATTGCAAGGGCCAATAGGCCTACTCAAAGGTTCAAGTGGG
GGATATCTATTGAACAGTCATTCATTGAGACTAGAATATCTTAAACTGAG
AAACAAAAATAACTGATTACGAAAGGGACTATGGATAAGTGGTATAAAAG
ATGGAAAAACTTCAGTTTAAAATCATCTTCATCTCTCGAAGCTCATCtac
aacaaacaacaaagaagttttatttgaaaaaggTAAATTGGtattaaaat
ttgttttctcATTATACAGTAGAGTTTTTTATAGGGGTCTGTACATgata
cggtgtgacgggattggctcTTTTtcagtacggtattacgggatttgacg
aaaaaaaaacggGGAAACGGTATTTTGAAATCAGACGGTTACGGTGATTA
GCCTTATATTTCTTGTCAATATTCCGGGATTTTAACCTCTACAAATTCGT
ATGAcggttttattattttttgcaaTTCTCGGGATTTCGGGATTCATCAA
AAgatttgacgggaaaacggcatttcaaacctttttgCGGGGTGATGAGT
ATTTCTCAgctaaaaatcgaaaatcgacccttcaaagagaaaaaaattaa
cacttttgagactttttgagagaatttttggtgattttttttcacctttt
tgtctttttaccAGATATTTCTTAGTCCAACCAATAATCAAAATGGCTGA
CGATGCATTGACGGAAGGAGCTAAACTTTACCAAAAAGAATTAAGATATA
TCACCGAGTTAGAAGGAGATGTGGAAGGAATGAAGTTCACAATCAAAGGT
GAAGGTACTGGTGATGCCACCACTGGAACTGTCAAATCTAAATATATTTG
CACTACTGGGGATCTTCCCGTTCCTTGGGCTACCATCTTGAGTAGCATAT
CTTATGGTGTCTTGTAagtaattttgatttgtttttttccaattctttta
aATCAATATCATGATTTAAACTTTATATATTAAGTGTGACTGTCTCAAAT
TGCTCCTATCCAAAAGGACTTCGCTGAAAACTTATAGTCTACTACAATAA
TAGCTATAAAAGGAAAGCTTTATTTTTAGCTCCTATCAAATTTACACTCT
TATACTTAGATGTTTCGCCAAATATCCACGTCACATTGCCGACTTTTTCA
AGAGTACGCAACCTGACGGTTATTCACAAGAGAGAACTATCAAGTTTGAT
AACGATGGCCAATATGATGTCAAAGCGAAAGTCACTTATGAAGAAGGGAC
GGTCTACAACAGAGTGAATCTGAAAGGTACTGTCTATAAGTCGAGTACAA
GTTAAGGATTTGATAACGGGTGGGGCTCAGAGTTAACGACCGATAGGGGA
AAGCTGCTGTATTTCGTAAATTACAACTATGACCATAACATTTGGCACNA
gctaaaaatcgaaaatcgacccttcaaagagaaaaaaattaacacttttg
agactttttgagagaatttttggtgattttttttcacctttttgtctttt
taccAGATATTTCTTAGTCCAACCAATAATCAAAATGGCTGACGATGCAT
TGACGGAAGGAGCTAAACTTTACCAAAAAGAATTAAGATATATCACCGAG
TTAGAAGGAGATGTGGAAGGAATGAAGTTCACAATCAAAGGTGAAGGTAC
TGGTGATGCCACCACTGGAACTGTCAAATCTAAATATATCTGCACCACTG
GTGATCTTCCCGTACCTTGGGCTACCATCTTGAGTAGCATATCTTATGGT
GTCTTGTAagtaattttgatttgtttttttccaattcttttaaATCAATA
TCATATGATTTAAACTTTATATATTAAGTGTGACTGTCTCAAATTGCTCC
TATCCAAAAGGACTTCGCTGAAAACTTATAGTCTACTACAATAATAGCTA
TAAAAGGAAAGCTTTATTTTTAGCTCCTATCAAATTTACACTCTTTTACT
TAGATGTTTCGCCAAATATCCACGTCACATTGCCGACTTTTTCAAGAGTA
CGCAACCTGACGGTTATTCACAAGAGAGAACTATCAAGTTTGATAACGAT
GGCCAATATGATGTCAAAGCGAAAGTCACTTATGAAGAAGGGACGGTCTA
CAACAGAGTGAATCTGAAAGGTACTGTCTATAAGTCGAGTACAAGTTAAG
GATTTGATAACGGGTGGGGCTCAGAGTTAACGACCGATAGGGGAAAGCTG
CTGTATTTCGTAAATTACAACTATGACCATAACATTTGGCACAAATGGGA
TTTCCctgtaaaattcaaaaaaaaaatgcaaataccgggtgcgccacaaa
aaaaatttcctctttaagattaattttctccaaatctgaaaatttcaaaa
gaactaTTCCAAGTTCATCGGAAAGAAGAacgataaacttaaattttgat
gggtcattNATTCCAagttcattggaaagaagaacgataaacttaaattt
tgatgggtcatttattaaattcgatttattagatcaaaagttcgaaaacg
ttgaaattcgacctatcaaatttttaattcataatttgctatcgcaatag
cctttacttgattaaaagcatttttcagtaattaaacaaataaattttga
aactgaagggttgaaagggtttaaaatcttaaaatcactttaatttactt
ttaccgaaattttccaaagatttttggttttagattggataaagtctgtg
taaggctggatgtacctcgaaacccatatttgatgtatttttatgaattt
taccagatttgtTGGCCTTTTTGACGAATTTcctgccttttattgaaatt
taaccttcctttatataagaAAAGGTCATTCAGCCAGCTAATTagctttt
tagaaaattaattttaaagagagaaacttttttgtggcacaaCCGGTAGT
TCTTAATTGCTTTAACTCAGGTTTGGAAAGTAAATTTTCatctctgagtt
ttaacatgaggcTTAAGACTTAAAATGGGTTTAGGatatctgaggatcca
aaagcttgCAAATAGTCCAATTAGACTGAGAATATAGACTGGAAACCATT
ATACTCCTCCCAAATCTTTGACCAAGTTGACCTGGTTAGGTGCTTGAATA
AGGTCAGACTGTTTGGAAAGCCCTGACTAGTGGAGTAGTCTGAATGACAT
CGAATGTAGATTATCAACATTAATAAATGGGGTCTTTAACTGGCGAGTTC
GACCTCCTTTAACAATTGaatttaatttctttaggtACTGGATTCAAATC
AAACGGCAACATCTTGGGCATGCGCATTCTTTACCATTGTCCTCCTCATT
GCGTCTATGTTCTTCCTGACCGTAAAAATGGTGGCATGAGATTGGAATTT
AACAAGGTGAGAGCAAATACATTAGAAAGATTGCTACAAGCATGGTTAAT
CTAATTATTGGTACCTACATAGTTTTGCCTGGAATGAATTTGtttctttt
atcaattttcactttttggcCATCTCAAAGACTCTATGAGATCATTTTTT
CTTAATTCAGTACATTGACGCTccctaattcgatcttcaagggtgattgg
attttcatcgaataagtgagcttatcgaataagggagcgtcgtttatgag
agtttcttgttgacggggactttaaatttcatcgaataagggagcttatc
gaataagggagcgtcgtttatgagagtttcttgttgacggggactttaaa
tttcatcgaataagggagcctatcgaatagtagaacgtcaaattagagag
cgtcaactgtagatatgtaaatattcaaaaattgctttctatttaacgtc
caaaagaaatttcttttgctatcCATTTTAAATCTTTTAGGCTGAGTTGT
CAAAACCCACGCTTGCGTCAGTTTAGGTTTAAGCGTATACGTCACAAAAA
ATGGAACCTACTATTCACCCCTTCCCTTATTTCGGATAATTTTCCCTTTT
GTTCTCTCAGACGACTGATATTAAATTGATTGTTCTTTTATGCTCAGGCT
TTTGATGTTATGGGTGGAGGTCATCAATTGGCTCGCCACGCCCAATTCAA
CAAACCATTAGGAGCCTGGGAAGAAGATTACCCTGGGTACCATCACATGT
CATTCTGGACATCTTTCGGTAAAGATCCAGATGATGATGACACTGACCAT
TTAACCATCGTTGAAATCATCAAAGCTATCGACTTGGAAACTTACCGtta
aattttgaatcaaattgcTACATAACAACACTTAAAGAAAACCATAATGG
TATCCACAAGAATTCAAGGACACTACATAAACACTTTACTCACACTTTCA
TTGTATAAAATTTTCAGGTTTAGTTAGGTTTTTTTCATAACATTTTGAGG
CAACGGCTGGCATCAATACCATAATTTTGAAGCCATCTTTTTTTGAAGTT
AGCAACACTGTACTAGTATTTATATATTCAAGAAATTTTCCATTCAAGAA
ATATCTCACTTTAAATCTTATAAATCAAATTTCTCTGGATTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063091-exon-scaffold_38-1491911889:232177..232808 | TCONS_00063091-exon-scaffold_38-1491911889:232177..232808 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1510915933:232177..232808 | TCONS_00063091-exon-scaffold_38-1510915933:232177..232808 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1575043694:232177..232808 | TCONS_00063091-exon-scaffold_38-1575043694:232177..232808 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1491911889:233241..233489 | TCONS_00063091-exon-scaffold_38-1491911889:233241..233489 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1510915933:233241..233489 | TCONS_00063091-exon-scaffold_38-1510915933:233241..233489 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1575043694:233241..233489 | TCONS_00063091-exon-scaffold_38-1575043694:233241..233489 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1491911889:233686..233852 | TCONS_00063091-exon-scaffold_38-1491911889:233686..233852 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1510915933:233686..233852 | TCONS_00063091-exon-scaffold_38-1510915933:233686..233852 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1575043694:233686..233852 | TCONS_00063091-exon-scaffold_38-1575043694:233686..233852 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1491911889:235811..235932 | TCONS_00063091-exon-scaffold_38-1491911889:235811..235932 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1510915933:235811..235932 | TCONS_00063091-exon-scaffold_38-1510915933:235811..235932 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1575043694:235811..235932 | TCONS_00063091-exon-scaffold_38-1575043694:235811..235932 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1491911889:236574..237071 | TCONS_00063091-exon-scaffold_38-1491911889:236574..237071 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1510915933:236574..237071 | TCONS_00063091-exon-scaffold_38-1510915933:236574..237071 | Clytia hemisphaerica | exon |
| TCONS_00063091-exon-scaffold_38-1575043694:236574..237071 | TCONS_00063091-exon-scaffold_38-1575043694:236574..237071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:232177..237071 + |
Blast
The following BLAST results are available for this feature:
|
