TCONS_00063077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063077
Unique NameTCONS_00063077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063077 ID=TCONS_00063077|Name=TCONS_00063077|organism=Clytia hemisphaerica|type=transcript|length=364bp
ctgaaaaaattgttcacagtgatgatgatctaagatcgAAGAACCACttc
tgtgaaaatggtaataaaccagctgcgctggaaagtcagcccaaaAAGCT
TAGAGGGCTTAGAAGTACAAATAAGAAATCTAGCTTTGTTAAAATCTGAA
CAGCTTGAAAGAGCGTATCTATTTGCTTGAAAGAGCGTATCTATTTGCTT
GAAAGAGCGTATctatttgcttgaaacgttcagACGAAAAAGTAGTGGTG
CATAGTGGAAGTGGAATCCGTCCAAAGCAGAAGTCGGTGAAACTAATTAA
TTCCATTGCTGTTATGCTCTttcctgggaatccatgctatgatttcttct
ttgatataCTGATG
Run BLAST on NCBI

transcript from alignment at scaffold_379:98338..98701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063077 ID=TCONS_00063077|Name=TCONS_00063077|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at scaffold_379:98338..98701 (Clytia hemisphaerica)
CATCAGtatatcaaagaagaaatcatagcatggattcccaggaaAGAGCA
TAACAGCAATGGAATTAATTAGTTTCACCGACTTCTGCTTTGGACGGATT
CCACTTCCACTATGCACCACTACTTTTTCGTctgaacgtttcaagcaaat
agATACGCTCTTTCAAGCAAATAGATACGCTCTTTCAAGCAAATAGATAC
GCTCTTTCAAGCTGTTCAGATTTTAACAAAGCTAGATTTCTTATTTGTAC
TTCTAAGCCCTCTAAGCTTtttgggctgactttccagcgcagctggttta
ttaccattttcacagaaGTGGTTCTTcgatcttagatcatcatcactgtg
aacaattttttcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039508XLOC_039508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063077-exon-scaffold_379-1491911889:98338..98701TCONS_00063077-exon-scaffold_379-1491911889:98338..98701Clytia hemisphaericaexon
TCONS_00063077-exon-scaffold_379-1510915933:98338..98701TCONS_00063077-exon-scaffold_379-1510915933:98338..98701Clytia hemisphaericaexon
TCONS_00063077-exon-scaffold_379-1575043694:98338..98701TCONS_00063077-exon-scaffold_379-1575043694:98338..98701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_379supercontigscaffold_379:98338..98701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.269111	0.50275	1.80829	0.873792	3.31071	0	1.65276	2.48779	1.69422	2.43212	0.468722	0.723246	2.36081	1.52039	1.43693	1.24157	0	1.54657	1.15082	0.568296	0.650365	0.785754	0.3422	1.26935	0.801663	2.41882	1.2449	0.755627	2.17034	1.06551
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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