TCONS_00063071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063071
Unique NameTCONS_00063071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063071 ID=TCONS_00063071|Name=TCONS_00063071|organism=Clytia hemisphaerica|type=transcript|length=139bp
aaaaacaTGTCGGTACTGTGCATTTCTCAACAAAAAAATCTATACAGCAA
AAATGAAATTTCgcttttattttgaatataaaAATGAACTAAAACTTAAA
CTAAAACGTCGTGTTATTTAgtaataattttcctaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_379:32190..32328

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063071 ID=TCONS_00063071|Name=TCONS_00063071|organism=Clytia hemisphaerica|type=transcript|length=139bp|location=Sequence derived from alignment at scaffold_379:32190..32328 (Clytia hemisphaerica)
tttttaggaaaattattacTAAATAACACGACGTTTTAGTTTAAGTTTTA
GTTCATTtttatattcaaaataaaagcGAAATTTCATTTTTGCTGTATAG
ATTTTTTTGTTGAGAAATGCACAGTACCGACAtgttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039502XLOC_039502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063071-exon-scaffold_379-1491911889:32190..32328TCONS_00063071-exon-scaffold_379-1491911889:32190..32328Clytia hemisphaericaexon
TCONS_00063071-exon-scaffold_379-1510915933:32190..32328TCONS_00063071-exon-scaffold_379-1510915933:32190..32328Clytia hemisphaericaexon
TCONS_00063071-exon-scaffold_379-1575043694:32190..32328TCONS_00063071-exon-scaffold_379-1575043694:32190..32328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_379supercontigscaffold_379:32190..32328 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top