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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063069 ID=TCONS_00063069|Name=TCONS_00063069|organism=Clytia hemisphaerica|type=transcript|length=1040bp CTTTATTTTTCACTTCATTGATAATAATCATTTTCATTGTATAgattaaa aacgaaaaaacaataacaaagaaACTAATGGATTAATACAAGTATAAGTT ATCTTCAATATGAGGCTGTCAAGTTTTCTACGTCGACTATCACATAATGT CTTGGTCATTGTTGTATTGGCTAACTTGATTTTGTATCATGTCAACGGTA GTGAAAACTTGCAATATGATAGCCATGAAGACTTGATAAAGAAAGTCAAA GAATCTGGAACCTTACCACCGTATAAAAATGGTGACAAGACAACGCCAGA TATCAAATCACCGGAACAAGCTGGAACTGTTGATTATGGTTTTATACATG CCTTTGTTGCATCCATATCTGTCATTATTGTTTCGGAGCTTGGTGACAAG ACATTTTTCATTGCGGCCATTATGGCTATGAGACACTCTAGATTAACTGT ATTTGCTGGTGCTATTGCAGCATTGGGTCTTATGACAGTGTTATCAGTTT TTCTTGGTTATGCTACCACAGTCATCCCAAGGAAATACACGTTTTATATT TCAACAGCACTATTTGCAATTTTCGGCTTAAAGATGTTGAAAGAGGGTTA TGACATGGATCCTGATGAAGGAGCTGAAGAACTGGAAGAAGTCCAAGCtg aattaaaaaagaaagaggCAGAGTTGGAAGGTGAGACGACGACAGATGTA GAGACGGGTATCATCAGATCCACCATCCGTAGGAACCGTTGTATGCGAGC CATCATGAGATGTTGTTCACCCATTCTCTTACAATCATTCACAATGACTT TCTTAGCTGAATGGGGCGATCGTTCACAATTAACAACCATCATTCTTGGT TCTAGAGAGAATCCGATTGGGGTAACGATAGGAGGGACCATTGGTCATGC GTTGTGTACTGGGTTGGCTGTAATGGGTGGTCGAATGATTGCTCAAAAGA TCTCTGTTAGAACTGtCACGTTAATCGGTGGAGCATTGTTTTTGTCATTT GCTTTCTCTGCCCTCTTCATAAACGAGCGTGGAGAATGGT Run BLAST on NCBI protein sequence of TCONS_00063069-protein >TCONS_00063069-protein ID=TCONS_00063069-protein|Name=TCONS_00063069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MRLSSFLRRLSHNVLVIVVLANLILYHVNGSENLQYDSHEDLIKKVKESG TLPPYKNGDKTTPDIKSPEQAGTVDYGFIHAFVASISVIIVSELGDKTFF IAAIMAMRHSRLTVFAGAIAALGLMTVLSVFLGYATTVIPRKYTFYISTA LFAIFGLKMLKEGYDMDPDEGAEELEEVQAELKKKEAELEGETTTDVETG IIRSTIRRNRCMRAIMRCCSPILLQSFTMTFLAEWGDRSQLTTIILGSRE NPIGVTIGGTIGHALCTGLAVMGGRMIAQKISVRTVTLIGGALFLSFAFS ALFINERGEW Run BLAST on NCBI transcript from alignment at scaffold_379:100137..102435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063069 ID=TCONS_00063069|Name=TCONS_00063069|organism=Clytia hemisphaerica|type=transcript|length=2299bp|location=Sequence derived from alignment at scaffold_379:100137..102435+ (Clytia hemisphaerica) CTTTATTTTTCACTTCATTGATAATAATCATTTTCATTGTATAgattaaa
aacgaaaaaacaataacaaagaaACTAATGGATTAATACAAGTATAAGTT
ATCTTCAATATGAGGCTGTCAAGTTTTCTACGTCGACTATCACATAATGT
CTTGGTCATTGTTGTATTGGCTAACTTGATTTTGTATCATGTCAACGGTA
GTGAAAACTTGCAATATGATAGCCATGAAGACTTGATAAAGAAAGTCAAA
GAATCTGGAACCTTACCACCGTATAAAAATGTTAGTgttatttcaaaact
ttatgaagtGTGACTCTATGACCAAAAGtttaatttattgatttttaaat
taAACTTAAGTGCTATTTTGTTCTTTATACTTTTAGGGTGACAAGACAAC
GCCAGATATCAAATCACCGGAACAAGCTGGAACTGTTGATTATGGTTTTA
TACATGCCTTTGTTGCATCCATATCTGTCATTATTGTTTCGGAGCTTGGT
GACAAGACATTTTTCATTGCGGCCATTATGGCTATGAGACACTCTAGATT
AACTGTATTTGCTGGTGCTATTGCAGCATTGGGTCTTATGACAGTGTTAT
CAGTTTTTCTTGGTTATGCTACCACAGTCATCCCAAGGAAATACACGTTT
TATATTTCAACAGCACTATTTGCAATTTTCGGCTTAAAGATGTTGAAAGA
GGGTTATGACATGGATCCTGATGAAGGAGCTGAAGAACTGGAAGAAGTCC
AAGCtgaattaaaaaagaaagaggCAGAGGTTTACTATTTACTCGATTTT
GCTCTGTTTCCGTCACCTTCGAAATTAATGTTataaaatttcagaaataa
ttGCTAATATGTTAGAAAGCAATCTTAATAACGAGTTTTAAACCATAAAA
TTTAATTCTAAATTTGAGGTTGATTCAAAAGACCCTAACCATTACAAAAG
GCTACTGCGGGGTGTTATAATACCTTGCATAATACTAACTTCTTAGATAC
TGTTGCCTACCCCTATTTAGAAATTATATATTTCTCCCTAATCCTGTccc
ttaaaaataaatttaacaaCAGTACGCGGTTTTACGGGTTTTTCGATAAA
AAGTTGGCAATCATTGAATAGAACTGACAACCAGATATTTCATTGCACTT
TCCTTTTCAGTTGGAAGGTGAGACGACGACAGATGTAGAGACGGGTATCA
TCAGATCCACCATCCGTAGGAACCGTTGTATGCGAGCCATCATGAGATGT
TGTTCACCCATTCTCTTACAATCATTCACAATGACTTTCTTAGCTGAATG
GGGCGATCGTTCACAATTAACAACCATCATTCTTGGTTCTAGAGAGGTAA
AGAATCTTTACAACCCGAATTCACAGACTTTCCAAAAAATTCTCCAAAAC
TTCATGAAAATGCGTGAGATGCAAAAGAAAACTTCACAAAGatgtgaatt
ttgggtccgctgaGGTCCGCAAAGCCGCAAATAAATTGTTTTTCGCTTGA
TTTCTGTCTTTGTAGAANGAAAGATGTGAATTTTGGGTCCCCTGAGGGCC
GCAAAGCCGCAAATAAATTGATTTTCGCTTGATTTCTGTCTTTGTAGAAT
CCGATTGGGGTAACGATAGGAGGGACCATTGGTCATGCGTTGTGTACTGG
GTTGGCTGTAATGGGTGGTCGAATGATTGCTCAAAAGATCTCTGTTAGAA
CTGGTATGTATATCTTTTATACTCTCCTTTTTTCTCTCCTTACGTTTTAT
TGTAAAACTTGTTGCCTTTCAATCTCACGGACTGCCAAAAATACCAAATA
ACTTAATTTATAAGTACTAAAATGGCATAGCACAAATACAGAAGCTACAA
AGAGCATAAATGTCAGATCTTTAGAATTAACTTCAAATGTTACCTTAAAT
ATATAATTTGTTAAGTGTTGATTATGTTAAATGTTAACCCTTTCTGTGAC
AATGACACTCGAAGTATTTGCCTAAATTGGTTACCAAccttttgaacaaa
aaactaGAGTgtccatttttaaaaagaaaagtaaagacaAAGGAGAAAGG
AAAACAATGTTCAGATTGACCTCATGAATCCTCATGAAAGGAGAAAGCCA
AAAtagtttgattattttcaaaagtgaGTGACGTTTTCACAGAGAGGGTT
AGCGCccatttaaacatttttaaattataatttttcatcATTCTCCTTTT
tctgacacttttctttttatttagtCACGTTAATCGGTGGAGCATTGTTT
TTGTCATTTGCTTTCTCTGCCCTCTTCATAAACGAGCGTGGAGAATGGT Coding sequence (CDS) from alignment at scaffold_379:100137..102435+ >TCONS_00063069 ID=TCONS_00063069|Name=TCONS_00063069|organism=Clytia hemisphaerica|type=CDS|length=4650bp|location=Sequence derived from alignment at scaffold_379:100137..102435+ (Clytia hemisphaerica) ATGAGGCTGTCAAGTTTTCTACGTCGACTATCACATAATGTCTTGGTCAT TGTTGTATTGGCTAACTTGATTTTGTATCATGTCAACGGTAGTGAAAACT TGCAATATGATAGCCATGAAGACTTGATAAAGAAAGTCAAAGAATCTGGA ACCTTACCACCGTATAAAAATGGTGACAAGACAACGCCAGATATCAAATC ACCGGAACAAGCTGGAACTGTTGATTATGGTTTTATACATGCCTTTGTTG CATCCATATCTGTCATTATTGTTTCGGAGCTTGGTGACAAGACATTTTTC ATTGCGGCCATTATGGCTATGAGACACTCTAGATTAACTGTATTTGCTGG TGCTATTGCAGCATTGGGTCTTATGACAGTGTTATCAGTTTTTCTTGGTT ATGCTACCACAGTCATCCCAAGGAAATACACGTTTTATATTTCAACAGCA CTATTTGCAATTTTCGGCTTAAAGATGTTGAAAGAGGGTTATGACATGGA TCCTGATGAAGGAGCTGAAGAACTGGAAGAAGTCCAAGCtgaattaaaaa agaaagaggCAGAGTTGGAAGGTGAGACGACGACAGATGTAGAGACGGGT ATCATCAGATCCACCATCCGTAGGAACCGTTGTATGCGAGCCATCATGAG ATGTTGTTCACCCATTCTCTTACAATCATTCACAATGACTTTCTTAGCTG AATGGGGCGATCGTTCACAATTAACAACCATCATTCTTGGTTCTAGAGAG AATCCGATTGGGGTAACGATAGGAGGGACCATTGGTCATGCGTTGTGTAC TGGGTTGGCTGTAATGGGTGGTCGAATGATTGCTCAAAAGATCTCTGTTA GAACTGtCACGTTAATCGGTGGAGCATTGTTTTTGTCATTTGCTTTCTCT GCCCTCTTCATAAACGAGCGTGGAGAATGGATGAGGCTGTCAAGTTTTCT ACGTCGACTATCACATAATGTCTTGGTCATTGTTGTATTGGCTAACTTGA TTTTGTATCATGTCAACGGTAGTGAAAACTTGCAATATGATAGCCATGAA GACTTGATAAAGAAAGTCAAAGAATCTGGAACCTTACCACCGTATAAAAA TGGTGACAAGACAACGCCAGATATCAAATCACCGGAACAAGCTGGAACTG TTGATTATGGTTTTATACATGCCTTTGTTGCATCCATATCTGTCATTATT GTTTCGGAGCTTGGTGACAAGACATTTTTCATTGCGGCCATTATGGCTAT GAGACACTCTAGATTAACTGTATTTGCTGGTGCTATTGCAGCATTGGGTC TTATGACAGTGTTATCAGTTTTTCTTGGTTATGCTACCACAGTCATCCCA AGGAAATACACGTTTTATATTTCAACAGCACTATTTGCAATTTTCGGCTT AAAGATGTTGAAAGAGGGTTATGACATGGATCCTGATGAAGGAGCTGAAG AACTGGAAGAAGTCCAAGCtgaattaaaaaagaaagaggCAGAGTTGGAA GGTGAGACGACGACAGATGTAGAGACGGGTATCATCAGATCCACCATCCG TAGGAACCGTTGTATGCGAGCCATCATGAGATGTTGTTCACCCATTCTCT TACAATCATTCACAATGACTTTCTTAGCTGAATGGGGCGATCGTTCACAA TTAACAACCATCATTCTTGGTTCTAGAGAGAATCCGATTGGGGTAACGAT AGGAGGGACCATTGGTCATGCGTTGTGTACTGGGTTGGCTGTAATGGGTG GTCGAATGATTGCTCAAAAGATCTCTGTTAGAACTGtCACGTTAATCGGT GGAGCATTGTTTTTGTCATTTGCTTTCTCTGCCCTCTTCATAAACGAGCG TGGAGAATGGATGAGGCTGTCAAGTTTTCTACGTCGACTATCACATAATG TCTTGGTCATTGTTGTATTGGCTAACTTGATTTTGTATCATGTCAACGGT AGTGAAAACTTGCAATATGATAGCCATGAAGACTTGATAAAGAAAGTCAA AGAATCTGGAACCTTACCACCGTATAAAAATGGTGACAAGACAACGCCAG ATATCAAATCACCGGAACAAGCTGGAACTGTTGATTATGGTTTTATACAT GCCTTTGTTGCATCCATATCTGTCATTATTGTTTCGGAGCTTGGTGACAA GACATTTTTCATTGCGGCCATTATGGCTATGAGACACTCTAGATTAACTG TATTTGCTGGTGCTATTGCAGCATTGGGTCTTATGACAGTGTTATCAGTT TTTCTTGGTTATGCTACCACAGTCATCCCAAGGAAATACACGTTTTATAT TTCAACAGCACTATTTGCAATTTTCGGCTTAAAGATGTTGAAAGAGGGTT ATGACATGGATCCTGATGAAGGAGCTGAAGAACTGGAAGAAGTCCAAGCt gaattaaaaaagaaagaggCAGAGTTGGAAGGTGAGACGACGACAGATGT AGAGACGGGTATCATCAGATCCACCATCCGTAGGAACCGTTGTATGCGAG CCATCATGAGATGTTGTTCACCCATTCTCTTACAATCATTCACAATGACT TTCTTAGCTGAATGGGGCGATCGTTCACAATTAACAACCATCATTCTTGG TTCTAGAGAGAATCCGATTGGGGTAACGATAGGAGGGACCATTGGTCATG CGTTGTGTACTGGGTTGGCTGTAATGGGTGGTCGAATGATTGCTCAAAAG ATCTCTGTTAGAACTGtCACGTTAATCGGTGGAGCATTGTTTTTGTCATT TGCTTTCTCTGCCCTCTTCATAAACGAGCGTGGAGAATGGATGAGGCTGT CAAGTTTTCTACGTCGACTATCACATAATGTCTTGGTCATTGTTGTATTG GCTAACTTGATTTTGTATCATGTCAACGGTAGTGAAAACTTGCAATATGA TAGCCATGAAGACTTGATAAAGAAAGTCAAAGAATCTGGAACCTTACCAC CGTATAAAAATGGTGACAAGACAACGCCAGATATCAAATCACCGGAACAA GCTGGAACTGTTGATTATGGTTTTATACATGCCTTTGTTGCATCCATATC TGTCATTATTGTTTCGGAGCTTGGTGACAAGACATTTTTCATTGCGGCCA TTATGGCTATGAGACACTCTAGATTAACTGTATTTGCTGGTGCTATTGCA GCATTGGGTCTTATGACAGTGTTATCAGTTTTTCTTGGTTATGCTACCAC AGTCATCCCAAGGAAATACACGTTTTATATTTCAACAGCACTATTTGCAA TTTTCGGCTTAAAGATGTTGAAAGAGGGTTATGACATGGATCCTGATGAA GGAGCTGAAGAACTGGAAGAAGTCCAAGCtgaattaaaaaagaaagaggC AGAGTTGGAAGGTGAGACGACGACAGATGTAGAGACGGGTATCATCAGAT CCACCATCCGTAGGAACCGTTGTATGCGAGCCATCATGAGATGTTGTTCA CCCATTCTCTTACAATCATTCACAATGACTTTCTTAGCTGAATGGGGCGA TCGTTCACAATTAACAACCATCATTCTTGGTTCTAGAGAGAATCCGATTG GGGTAACGATAGGAGGGACCATTGGTCATGCGTTGTGTACTGGGTTGGCT GTAATGGGTGGTCGAATGATTGCTCAAAAGATCTCTGTTAGAACTGtCAC GTTAATCGGTGGAGCATTGTTTTTGTCATTTGCTTTCTCTGCCCTCTTCA TAAACGAGCGTGGAGAATGGATGAGGCTGTCAAGTTTTCTACGTCGACTA TCACATAATGTCTTGGTCATTGTTGTATTGGCTAACTTGATTTTGTATCA TGTCAACGGTAGTGAAAACTTGCAATATGATAGCCATGAAGACTTGATAA AGAAAGTCAAAGAATCTGGAACCTTACCACCGTATAAAAATGGTGACAAG ACAACGCCAGATATCAAATCACCGGAACAAGCTGGAACTGTTGATTATGG TTTTATACATGCCTTTGTTGCATCCATATCTGTCATTATTGTTTCGGAGC TTGGTGACAAGACATTTTTCATTGCGGCCATTATGGCTATGAGACACTCT AGATTAACTGTATTTGCTGGTGCTATTGCAGCATTGGGTCTTATGACAGT GTTATCAGTTTTTCTTGGTTATGCTACCACAGTCATCCCAAGGAAATACA CGTTTTATATTTCAACAGCACTATTTGCAATTTTCGGCTTAAAGATGTTG AAAGAGGGTTATGACATGGATCCTGATGAAGGAGCTGAAGAACTGGAAGA AGTCCAAGCtgaattaaaaaagaaagaggCAGAGTTGGAAGGTGAGACGA CGACAGATGTAGAGACGGGTATCATCAGATCCACCATCCGTAGGAACCGT TGTATGCGAGCCATCATGAGATGTTGTTCACCCATTCTCTTACAATCATT CACAATGACTTTCTTAGCTGAATGGGGCGATCGTTCACAATTAACAACCA TCATTCTTGGTTCTAGAGAGAATCCGATTGGGGTAACGATAGGAGGGACC ATTGGTCATGCGTTGTGTACTGGGTTGGCTGTAATGGGTGGTCGAATGAT TGCTCAAAAGATCTCTGTTAGAACTGtCACGTTAATCGGTGGAGCATTGT TTTTGTCATTTGCTTTCTCTGCCCTCTTCATAAACGAGCGTGGAGAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063069-exon-scaffold_379-1491911889:100137..100416 | TCONS_00063069-exon-scaffold_379-1491911889:100137..100416 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1510915933:100137..100416 | TCONS_00063069-exon-scaffold_379-1510915933:100137..100416 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1575043694:100137..100416 | TCONS_00063069-exon-scaffold_379-1575043694:100137..100416 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1491911889:100523..100915 | TCONS_00063069-exon-scaffold_379-1491911889:100523..100915 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1510915933:100523..100915 | TCONS_00063069-exon-scaffold_379-1510915933:100523..100915 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1575043694:100523..100915 | TCONS_00063069-exon-scaffold_379-1575043694:100523..100915 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1491911889:101297..101482 | TCONS_00063069-exon-scaffold_379-1491911889:101297..101482 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1510915933:101297..101482 | TCONS_00063069-exon-scaffold_379-1510915933:101297..101482 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1575043694:101297..101482 | TCONS_00063069-exon-scaffold_379-1575043694:101297..101482 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1491911889:101734..101839 | TCONS_00063069-exon-scaffold_379-1491911889:101734..101839 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1510915933:101734..101839 | TCONS_00063069-exon-scaffold_379-1510915933:101734..101839 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1575043694:101734..101839 | TCONS_00063069-exon-scaffold_379-1575043694:101734..101839 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1491911889:102361..102435 | TCONS_00063069-exon-scaffold_379-1491911889:102361..102435 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1510915933:102361..102435 | TCONS_00063069-exon-scaffold_379-1510915933:102361..102435 | Clytia hemisphaerica | exon |
TCONS_00063069-exon-scaffold_379-1575043694:102361..102435 | TCONS_00063069-exon-scaffold_379-1575043694:102361..102435 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_379 | supercontig | scaffold_379:100137..102435 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR001727 | Gdt1 |
Blast
BLAST of TCONS_00063069 vs. Swiss-Prot (Human)
Match: TM165 (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.438e-84 Identity = 154/227 (67.84%), Postives = 181/227 (79.74%), Query Frame = 2
Query: 314 EQAGTVDYGFIHAFVASISVIIVSELGDKTFFIAAIMAMRHSRLTVFAGAIAALGLMTVLSVFLGYATTVIPRKYTFYISTALFAIFGLKMLKEGYDMDPDXXXXXXXXXXXXXXXXXXXXXXXT----TTDVETGIIRSTIRRNRCMRAIMRCCSPILLQSFTMTFLAEWGDRSQLTTIILGSRENPIGVTIGGTIGHALCTGLAVMGGRMIAQKISVRTVTLIGG 982
+ A + GFIHAFVA+ISVIIVSELGDKTFFIAAIMAMR++RLTV AGA+ ALGLMT LSV GYATTVIPR YT+Y+ST LFAIFG++ML+EG M PDEG EELEEVQAELKKK+ E + DVETG T+ + + + I SPI +Q+ T+TFLAEWGDRSQLTTI+L +RE+P GV +GGT+GH LCTGLAV+GGRMIAQKISVRTVT+IGG
Sbjct: 84 DPATQTNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGT-SITVPQKKWLHFI----SPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGG 305
The following BLAST results are available for this feature:
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