TCONS_00063067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063067
Unique NameTCONS_00063067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063067 ID=TCONS_00063067|Name=TCONS_00063067|organism=Clytia hemisphaerica|type=transcript|length=1880bp
GCAGTTCGTTGACACATCCTTTAACCGTGATGTTATAAAGCCTTTCTCAG
ATGCTAGACGGTGCCTTGCTTATAAGAGGGCTTTAAAATGATCTGATAAC
TCTTTTATGTGTATAGAGACTTTTTTAAGTCcgctttgttttaatttttt
gatgtGATTCTGGATGTAGATAGCTGTTTCTTTCTGACTGGAGTGTTTTA
AGTTTTTATGTATTGGGGTTAGATTTGATCTGAGTAAAGATTTACAACTT
TTACGATCTATcagaaattacaaaataataCAGTCAAACATAATCGTTGT
TTGGTTGTTATTGGTGTTGTTgcaaagatgaaaatttttggCAAACGGAT
TTTGAGATCTGCGAAAAGCAAATCTGATCTATCGTCCAAATCaaaaaacg
aGACATGTCGTTGCGAATCGCTACAAAAAGATTACGAATCACTTCGATTG
AACCACGAAGCTGAAATCTCTCGTCTTCATGAAGAACACATCTTAGAAAA
GAATAATACTCTCGTACAAACACAAAAAGATTACGACCTCAAATTGCAAG
AAGCTTGGGACAAACAAACTCGTCTAacagaagaacatcaaaacgaGCTC
AAGAAACTCAAAGATGAACACAgaaaaactcttgaaaaatTACGTGAAGA
AAACAAAGAGAAGGAAGGGCGATTGAGCGTTGAGCCGCCTCCAAGGTTGC
AATCTCCTGGAGGGACACCTcTATATACTGATCGCTATGACAATATGCCG
GAGGAGCTGAAAAGTTTGAATATTGTTCTCGACATGAAgaatgaagaatt
gaaaaatcttcgAAAGCGAAACATGGAACTTGAACGAAAACTTGACAAAC
ATTACGAGTTGGAGACTAAATACGATGCTTTAGCTCAAAAGAATCAATCC
ATGGCTGAAATGTTGAAACAAAAATCACTTACTGAAAGGCAATTATCCGT
GGAACGTGAAAATCTTATGGAGAAATTCGAAACTGAAAGTAAAAAGGTGT
CACAATTATCAATGGAGAAAGAACAATTAATTTGGCGAGCCTCTAATCCA
GACTTGACTTATGGTTCATTAGCCCGTATCGATGATGAAGACGACGACGA
GGCTAGAGACTCACCGCCTTCACCGCTCCGTTCGTCTGGCTCCTTTTCCG
CTAGTTCGACACCCCGGCGTCCGAAAACAAGTAAAGAAGCCgaaatcgct
aaaaaactgaAACGCAGGAGCATGAATTTCTAAAACTGGGTAGCAAGAGT
GACTTGACGTTTGACGTTTTCGCAACGAATTTGTTGCTGCCACGGAAAGA
GGTGGTCTGCTCATTCTCAACAACCGACCTTGGAGTTTCTTGctgctaaa
aatgaaattttattttttcttgaaaaatattatctttAACATGTTTAGAA
ATAGTTAACAAAATAAGAAGCATTATATTATAAAttaaattgaacatttt
tttgtgttttttctaaattttatatttattttacaAGCGTgtttataaaa
catttttttccgctTTGGCATAGCCTTAGAAATTCAGATCTAACTTTTGA
GTTCTAGCTGGTTCTAGCGCAATGAAAATTAAGTTGAGTTTTGTAGGAAA
ATATCTTATCAGCTATTAAAAGATATTTCAGTAGCTTTAACTTTTCCTGT
CCATTAGAACCGCAGTATAACTGGTCAGCTCCATTACTTTCCTTCGCCTT
GAAAATGTTCTTTCCTTTGCCTTGGTAATTTTGTGTCTGCTTTTTCTCTT
AAGTACAGCAAAGCagtaaagtaaaagtaaaagtaagtaaAGCAGTAAAA
AGAGCAGTACTGTTCTAAAAATAAGAAGTATTAGCAatttatttctttat
tcttgTAAATAtcaatttgttgttttaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_379:77014..89050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063067 ID=TCONS_00063067|Name=TCONS_00063067|organism=Clytia hemisphaerica|type=transcript|length=12037bp|location=Sequence derived from alignment at scaffold_379:77014..89050+ (Clytia hemisphaerica)
GCAGTTCGTTGACACATCCTTTAACCGTGATGTTATAAAGCCTTTCTCAG
ATGCTAGACGGTGCCTTGCTTATAAGAGGGCTTTAAAATGATCTGATAAC
TCTTTTATGTGTATAGAGACTTTTTTAAGTCcgctttgttttaatttttt
gatgtGATTCTGGATGTAGATAGCTGTTTCTTTCTGACTGGAGTGTTTTA
AGTTTTTATGTATTGGGGTTAGATTTGATCTGAGTAAAGATTTACAACTT
TTACGATCTATcagaaattacaaaataataCAGTCAAACATAATCGTTGT
TTGGTTGTTATTGGTGTTGTTgcaaagatgaaaatttttggCAAACGGAT
TTTGAGATCTGCGAAAAGCAAATCTGATCTATCGTCCAAATCaagtaata
atattttttgtttgactTCTTCTTTGAAGTTCGAATTTAGACTAGATCCT
TTTCCAGGTCCTTACTTTTTATACGTTTGTTAGCTATCTCTCAGTCAAAA
GTTCATTATTATTGACCTGGttgtattcttttttagaaaacgaGACATGT
CGTTGCGAATCGCTACAAAAAGATTACGAATCACTTCGATTGAACCACGA
AGCTGAAATCTCTCGTCTTCATGAAGAACACATCTTAGAAAAGAATAATA
CTCTCGTACAAACACAAAAAGATTACGAATCACTTCGATTGAACCACGAA
GCTGAAATCTCTCGTCTTCATGAAGAACACATCTTAGAAAAGAATAATAC
TCTCGTACAAACACAAAAAGATTACGACCTCAAATTGCAAGAAGGTTTGT
TAGAATTCAGTTTTTGTAGGGATGGAAAAGATTCGCAATATTCTATGTTC
TGTTTCTTGATACCATTTCGAATTATAACCAGTTACGTACAAGATAATAT
CGTTACCAAGTTtgccaatgtttttttttctgagagTTGACGTCCTTGGT
ATTATCTTGACTCATAATGTTAGTTTTAGTTCCACGTATTAAaccaatat
ttgaaaattatgTAAACAGAAGAATTATGTGGTTTTTTTATAACGAATCT
TGAACAAGTCTGATTATATAATCTTTCAAATTGAAAGTTATATCGGTTCG
GTATCAGTCACCAAGCTTCCTTCATGCAAAATGCTTTACGAAACATGTTC
AAAATTTTAACTGCAAGGAGGTGGGGGCGTATACATATTTTTTGAAGGTG
TTCgttcaaattagcatgttttttaatgattttttatcaTCGCATCTTTT
CGCCGTATCAGAATCAAAAACATATCGGGCACAGTTGACATGCTCATTCA
ATTTTGACATTCATCACAGttactttatttttgaaacaggAAATGGCTTT
TTAATTGTCGTGCTATTAATCATTCTAAGCATTTTACGAAATTCGATGTA
CATTGTTTCGAAGTTCAGTCTGACATATTGGTTAGcaaccatgaaaaata
ttttgatactaATGTGAAATTTCGAAAGCCGTTCTGTagcttttctttta
aaaaatctgaaaaggtTGATAAGGTTTTGCTATCGTTGAACATAAGAAAT
CGTATGAAATTTAGATACAACCTTACCAGTAGAAACGCTACCCCTGTCGA
ATTGTCCTTAAGTATTCCAAAAATTTCCAAGATCAAACTTTTCTTGTTTA
TGTTTCCAAAATGAGAGCGATTTCTTAAGATTTCTATTTTGAAATACTTG
AATTGCTTCATATGCCTTGCACATACTTGTCATTTGAATTGAAGGGTCAA
TTAAGTACCTCGCAAGATTTCTAAATGACCTGTTATCTGAAAGATGGGTA
TCATATTActttgttatgttatgtatattaCATTCAAGTTACATTCATCt
tatacatttatttttgttttcacagCTTGGGACAAACAAACTCGTCTAac
agaagaacatcaaaacgaGGTCAgtgttcacttttttttttataagaaca
tccaaaatttttgaagccttcggatgttcttaactttttgagttttaagc
ctaaaaatgttcttgacatttttgccattttttgagtatttttgtccatt
ttcctaatatACAGGTACGAGCcaggaagtatcttatccatttggtggac
taactttattggggtttttcttgttccttatggtaataagaatattttaa
gcttctgggccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tcaaaaattttgcagtaaaaatgtgtattttacagaccagagtacaattt
ccttaccgtcgaaaaaagatctttttctctccaaattggcctttttgtct
gaaatgaatgagGGAAATGTACCCCAATAGGGTTTATAACCAATCACTTC
TTCTTAATCTCACTCAGAGGGGTACTTAGCAACAAGTACGGGCTAAATGT
GTCcggtcagcactttataagtatgatttacggtaagacatgatcccgaa
aactgtgaaatttccaaataattaatgaaaaattctctCANNNNNNNNNN
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aggtGTCGATGATCtaccttgggaataccttgctaacaatgtcaaaactt
cgacaaaagtctctgttgttctacacTTCTccagtcttttatctatatca
taacaaagataacagatgcgaaatcatcgtcatttttcaaaactccgATG
AAATAATATCgattactttaagggcagaaaNNNNNNNNNNNNNNNNNNNN
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NNNNNaattcatttcagacaaaaaggccaattttgagagaaaaaggtctt
ttttcgacggtaaggaaattgtactctggtctgtaaaatacacattttta
ctgcaaaattgttgaaaatttgcacaaacaattttcaatgccttttctag
gagcacacaaagttttgatatgtttaaaagcatatttcttgagatatgac
taaaagaactgcctcactccatgaaagcccgcctacagttgcagccaaac
ctgagaaaacgaaagtgatttatatctcgagataggaaagttttcagacc
caactttgtatctcaaaattaatcagtatcaaatttctgatcgattgata
tatgataagcctatatttaggttggaagaattttcagttttgcctacagg
ggtcacatgaccaaaaatccgccattatggatacccaggtgagaaatcca
ggtggcccagaagcttaaaatattcttattaccataaggaacaagaaaaa
ccccaataaagttagtccaccaaatggataagatacttcctgGCTCGTAC
CTGTATATAAGAAATTGGCCTTTTTAGAGTcagtaaagccttaaaatgtt
ctcaatatgctcttaagattttggccatcgaagccttatgttcttatata
gtttattcttataaaaaatcgtgtATTTCTGGAAGATAATTCATACCCCT
CCTACCAATCTCTCTCTTTCTGGTCTAGCTTATCTCAAAATTAGATTAAT
GATTTTCATGAAAAGAGATTTTGATTTCCATTGTGATTACCTAGGCCgat
tttctttcgttttttcgATAAGCTAAGCTTGTTGATTTCACCTCCAAAAT
CTTTGCTGACTCGCCTTCTGAGAAGCTTgatttaaaatgaattttatagA
GAATTATTCTCACCgtatttattaaattttaattttaattttctctttct
AACTGCAGCTCAAGAAACTCAAAGATGAACACAgaaaaactcttgaaaaa
tTACGTGAAGGTAAACCATTTTAATCTCCAAGAAAACCCTATATTGAACT
TCTATGCTCTCTTTCTCTCTCCAAGAATCTTTTTTATACCAACTGATTCA
TTGAGTAACACCGGAAGAAAATTATGGCTTATATCAAGAGATCTTTGCGT
AAACTTTCAAGACAAGGTGAATAGAATGAAGATAGAACTTTACTTCTTTT
GACAAAATCCATCGTTTTGTTAAAACTTGCCTTATCGGTCCTTTTTACGC
TGGAACTTTTACGCTGGCTCTTGCTTAGTGGCGTTATTTTTTCGTTGCTG
GCGTAGGGTAAGGGATTGGAATTGAATAAAAGCCAGGctaaaaatgggaa
aaattgaGCTTTGGCGTTATAAGGGTCGGCgcaaaaagggccgataaggt
atcgtTAAACGAGTCCCGAACGTCCCGAACCCCTTCTAGTATTAAAGTCA
ACATTTTTAttgtataaattattttttgattgaatcttTCATAGAAAACA
AAGAGAAGGAAGGGCGATTGAGCGTTGAGCCGCCTCCAAGGTTGCAATCT
CCTGGAGGGACACCTGTAAGTTATAATATCTTTTTATGGTTCCCTTTAGG
AATATCTAAGGTTATGATTTTCGTgtttttccccattttcttctttctcg
ttTGTACTAAGCTAAGGGAAAATTAGTATAGCTCTGAACCCAAGTGGCTG
ACATACTCCTTACCTTAGCTTTGCTTTTTCTCAATAATGGGAATCCCATG
AGGCAGggtcgaaaaaagaaaaaaaatcaagtttcaaCAGTTTGCCAATG
AAAGGAAAACCTCTGCcggaattgaaaaaagaaaatatttctgttgtcga
tttttcaagatttttcgaCTTGTATTTCACTTGAACATTTCATTTTCACT
TattgattttcaacttttttcagcTATATACTGATCGCTATGACAATATG
CCGGAGGAGCTGAAAAGTTTGAATATTGTTCTCGACATGAAgaatgaaga
attgaaaaatcttcgAAAGCGAAACATGGAACTTGAACGAAAAGTAAGGC
TGTTTCTTCACGTCACTATTCCTTCTGACTGTATTTTCTTGAgtgtaatt
tgaaataaatcCTCTCTTTTTCTGAATGGGAGTATACAATTACACAGCAT
CTCGGGTTAGAATCCCCGCTCTTTCCGTGTTCTGAGCCGGCTGTTGGTAG
ACCCCACGAAATTAATCGGAAAGCTTTTTAAAATCACTGTACCGGGCTAT
CTTCTCAAAATATCGACTTTACCTGACATGATCATAATCATAATTGTTTC
TCTTGCATTTCTTAACTTTCAGCTTGACAAACATTACGAGTTGGAGACTA
AATACGATGCTTTAGCTCAAAAGAATCAATCCATGGCTGAAATGTTGAAA
CAAAAATCACTTACTGAAAGGTATATGCTCATCATGTTACAGAATCTGAT
TATAACCTTCGTAGTTTAATTCCAATAAGATACTACCGGGACAATATAGT
TGTACAAAAAAACAACTAAGTGAAAACTAAGTGGAAAGGCAGAATTTTCA
ACTACCAGTTGCTGCATAACGAAAGTTGATACATTTTTTTCCTTGTTCTG
AATCATATCGTTTAGCATCTGTTCTTGCGAGACAAGATCCTTCGAGGTTT
TGAATCCTTTTTTCcgtatttagattttttttttgttctttgaaGGCAAT
TATCCGTGGAACGTGAAAATCTTATGGAGAAATTCGAAACTGAAAGTAAA
AAGGTGTCACAATTATCAATGGAGAAAGAACAATTAATTTGGCGAGCCTC
TAATCCAGACTTGACTTATGGTTCATTAGCCCGTATCGATGATGAAGACG
ACGACGAGGCTAGAGACTCACCGCCTTCACCGCTCCGTTCGTCTGGCTCC
TTTTCCGCTAGTTCGACACCCCGGCGTCCGAAAACAAGTAAAGAAGCCga
aatcgctaaaaaactgaAACGCAGGAGCATGAATTTCTAAAACTGGGTAG
CAAGAGTGACTTGACGTTTGACGTTTTCGCAACGAATTTGTTGCTGCCAC
GGAAAGAGGTGGTCTGCTCATTCTCAACAACCGACCTTGGAGTTTCTTGc
tgctaaaaatgaaattttattttttcttgaaaaatattatctttAACATG
TTTAGAAATAGTTAACAAAATAAGAAGCATTATATTATAAAttaaattga
acatttttttgtgttttttctaaattttatatttattttacaAGCGTgtt
tataaaacatttttttccgctTTGGCATAGCCTTAGAAATTCAGATCTAA
CTTTTGAGTTCTAGCTGGTTCTAGCGCAATGAAAATTAAGTTGAGTTTTG
TAGGAAAATATCTTATCAGCTATTAAAAGATATTTCAGTAGCTTTAACTT
TTCCTGTCCATTAGAACCGCAGTATAACTGGTCAGCTCCATTACTTTCCT
TCGCCTTGAAAATGTTCTTTCCTTTGCCTTGGTAATTTTGTGTCTGCTTT
TTCTCTTAAGTACAGCAAAGCagtaaagtaaaagtaaaagtaagtaaAGC
AGTAAAAAGAGCAGTACTGTTCTAAAAATAAGAAGTATTAGCAatttatt
tctttattcttgTAAATAtcaatttgttgttttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039499XLOC_039499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063067-exon-scaffold_379-1491911889:77014..77407TCONS_00063067-exon-scaffold_379-1491911889:77014..77407Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:77014..77407TCONS_00063067-exon-scaffold_379-1510915933:77014..77407Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:77014..77407TCONS_00063067-exon-scaffold_379-1575043694:77014..77407Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:77550..77644TCONS_00063067-exon-scaffold_379-1491911889:77550..77644Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:77550..77644TCONS_00063067-exon-scaffold_379-1510915933:77550..77644Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:77550..77644TCONS_00063067-exon-scaffold_379-1575043694:77550..77644Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:77744..77807TCONS_00063067-exon-scaffold_379-1491911889:77744..77807Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:77744..77807TCONS_00063067-exon-scaffold_379-1510915933:77744..77807Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:77744..77807TCONS_00063067-exon-scaffold_379-1575043694:77744..77807Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:78889..78932TCONS_00063067-exon-scaffold_379-1491911889:78889..78932Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:78889..78932TCONS_00063067-exon-scaffold_379-1510915933:78889..78932Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:78889..78932TCONS_00063067-exon-scaffold_379-1575043694:78889..78932Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:86372..86423TCONS_00063067-exon-scaffold_379-1491911889:86372..86423Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:86372..86423TCONS_00063067-exon-scaffold_379-1510915933:86372..86423Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:86372..86423TCONS_00063067-exon-scaffold_379-1575043694:86372..86423Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:86908..86978TCONS_00063067-exon-scaffold_379-1491911889:86908..86978Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:86908..86978TCONS_00063067-exon-scaffold_379-1510915933:86908..86978Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:86908..86978TCONS_00063067-exon-scaffold_379-1575043694:86908..86978Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:87337..87456TCONS_00063067-exon-scaffold_379-1491911889:87337..87456Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:87337..87456TCONS_00063067-exon-scaffold_379-1510915933:87337..87456Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:87337..87456TCONS_00063067-exon-scaffold_379-1575043694:87337..87456Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:87736..87833TCONS_00063067-exon-scaffold_379-1491911889:87736..87833Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:87736..87833TCONS_00063067-exon-scaffold_379-1510915933:87736..87833Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:87736..87833TCONS_00063067-exon-scaffold_379-1575043694:87736..87833Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1491911889:88109..89050TCONS_00063067-exon-scaffold_379-1491911889:88109..89050Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1510915933:88109..89050TCONS_00063067-exon-scaffold_379-1510915933:88109..89050Clytia hemisphaericaexon
TCONS_00063067-exon-scaffold_379-1575043694:88109..89050TCONS_00063067-exon-scaffold_379-1575043694:88109..89050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_379supercontigscaffold_379:77014..89050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.362048	0.308639	0.94951	0.779815	0.38582	2.21049	4.13727	7.97897	6.06184	9.34612	7.27931	11.4991	11.2324	9.12366	5.84382	10.2222	8.72209	15.1373	17.7984	10.0905	8.58361	6.80151	10.3131	5.81547	8.41191	4.15004	6.84207	4.52888	3.3316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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